Strain Fitness in Shewanella amazonensis SB2B around Sama_2315

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,779,937	-				-3.5
2,779,937	-				-1.6
2,779,937	-				-4.0
2,779,947	+				+1.8
2,779,948	-				-2.1
2,779,948	-				-0.8
2,779,951	+				-2.0
2,779,951	+				-1.5
2,779,952	-				-1.0
2,779,952	-				+0.2
2,779,957	+				-1.4
2,779,958	-				-3.1
2,779,971	+				-1.9
2,779,972	-				-1.5
2,779,972	-				-3.3
2,779,972	-				-1.6
2,779,992	+				-0.2
2,779,992	+				-3.4
2,779,993	-				+0.0
2,779,996	+				-3.1
2,779,997	-				-1.8
2,780,048	-				-3.4
2,780,048	-				-2.4
2,780,112	+	flgF	Sama_2314	0.17	-2.0
2,780,112	+	flgF	Sama_2314	0.17	-3.0
2,780,272	-	flgF	Sama_2314	0.39	-0.5
2,780,295	+	flgF	Sama_2314	0.42	-2.7
2,780,295	+	flgF	Sama_2314	0.42	-3.4
2,780,295	+	flgF	Sama_2314	0.42	-3.9
2,780,432	+	flgF	Sama_2314	0.60	-2.2
2,780,432	+	flgF	Sama_2314	0.60	-1.6
2,780,432	+	flgF	Sama_2314	0.60	-0.5
2,780,432	+	flgF	Sama_2314	0.60	-2.2
2,780,433	-	flgF	Sama_2314	0.60	-1.4
2,780,433	-	flgF	Sama_2314	0.60	-2.6
2,780,514	+	flgF	Sama_2314	0.71	-2.2
2,780,709	+				-1.4
2,780,711	+				-2.3
2,780,712	-				-0.5
2,780,712	-				-2.4
2,780,748	+				-0.5
2,780,748	+				-2.0
2,780,748	+				-1.0
2,780,749	-				+1.2
2,780,823	+				-0.2
2,780,823	+				+1.4
2,780,823	+				+1.5
2,780,823	+				-0.2
2,780,823	+				-0.1
2,780,823	+				-0.7
2,780,823	+				+1.3
2,780,824	-				-0.6
2,780,824	-				-1.0
2,780,824	-				-2.1
2,780,824	-				-1.8
2,780,824	-				+0.9
2,780,824	-				-0.8
2,780,824	-				-1.5
2,780,824	-				+0.3
2,780,833	-				+0.8
2,780,844	-				+1.4
2,780,844	-				+1.1
2,780,930	-				-2.5
2,780,945	-				-3.1
2,780,945	-				-2.6
2,780,965	+				-2.1
2,780,966	-				-2.8
2,781,013	+				-2.0
2,781,014	-				-1.8
2,781,181	+	flgE	Sama_2315	0.21	-1.4
2,781,181	+	flgE	Sama_2315	0.21	-1.9
2,781,181	+	flgE	Sama_2315	0.21	-0.8
2,781,182	-	flgE	Sama_2315	0.21	-2.8
2,781,182	-	flgE	Sama_2315	0.21	-1.0
2,781,196	-	flgE	Sama_2315	0.22	-3.5
2,781,205	+	flgE	Sama_2315	0.23	-0.2
2,781,206	-	flgE	Sama_2315	0.23	-1.5
2,781,225	-	flgE	Sama_2315	0.24	-2.1
2,781,225	-	flgE	Sama_2315	0.24	-1.9
2,781,225	-	flgE	Sama_2315	0.24	-0.2
2,781,225	-	flgE	Sama_2315	0.24	-3.2
2,781,279	-	flgE	Sama_2315	0.28	-1.5
2,781,282	+	flgE	Sama_2315	0.28	-0.8
2,781,298	-	flgE	Sama_2315	0.30	-1.6
2,781,298	-	flgE	Sama_2315	0.30	-0.2
2,781,398	+	flgE	Sama_2315	0.37	-3.3
2,781,419	-	flgE	Sama_2315	0.39	-2.4
2,781,419	-	flgE	Sama_2315	0.39	-1.2
2,781,419	-	flgE	Sama_2315	0.39	-1.9
2,781,420	+	flgE	Sama_2315	0.39	-1.9
2,781,420	+	flgE	Sama_2315	0.39	-1.8
2,781,420	+	flgE	Sama_2315	0.39	-1.0
2,781,420	+	flgE	Sama_2315	0.39	-1.0
2,781,421	-	flgE	Sama_2315	0.39	-1.9
2,781,421	-	flgE	Sama_2315	0.39	-3.9
2,781,421	-	flgE	Sama_2315	0.39	-1.9
2,781,421	-	flgE	Sama_2315	0.39	-1.9
2,781,421	-	flgE	Sama_2315	0.39	-2.8
2,781,421	-	flgE	Sama_2315	0.39	-4.2
2,781,421	-	flgE	Sama_2315	0.39	-3.6
2,781,421	-	flgE	Sama_2315	0.39	-0.8
2,781,421	-	flgE	Sama_2315	0.39	+1.8
2,781,421	-	flgE	Sama_2315	0.39	-1.0
2,781,424	+	flgE	Sama_2315	0.39	+0.8
2,781,425	-	flgE	Sama_2315	0.39	-1.2
2,781,425	-	flgE	Sama_2315	0.39	-1.4
2,781,425	-	flgE	Sama_2315	0.39	-2.1
2,781,425	-	flgE	Sama_2315	0.39	-0.5
2,781,425	-	flgE	Sama_2315	0.39	+0.4
2,781,525	+	flgE	Sama_2315	0.46	-1.6
2,781,525	+	flgE	Sama_2315	0.46	-2.9
2,781,526	-	flgE	Sama_2315	0.46	-1.4
2,781,526	-	flgE	Sama_2315	0.46	-2.6
2,781,530	-	flgE	Sama_2315	0.47	-2.4
2,781,573	+	flgE	Sama_2315	0.50	-2.5
2,781,573	+	flgE	Sama_2315	0.50	-1.4
2,781,574	-	flgE	Sama_2315	0.50	-1.6
2,781,574	-	flgE	Sama_2315	0.50	-2.1
2,781,574	-	flgE	Sama_2315	0.50	-0.8
2,781,574	-	flgE	Sama_2315	0.50	-1.2
2,781,574	-	flgE	Sama_2315	0.50	+0.2
2,781,576	+	flgE	Sama_2315	0.50	-0.5
2,781,577	-	flgE	Sama_2315	0.50	-0.8
2,781,577	-	flgE	Sama_2315	0.50	-1.8
2,781,604	-	flgE	Sama_2315	0.52	-4.2
2,781,604	-	flgE	Sama_2315	0.52	-2.1
2,781,624	-	flgE	Sama_2315	0.54	-1.0
2,781,624	-	flgE	Sama_2315	0.54	+0.8
2,781,630	+	flgE	Sama_2315	0.54	-2.8
2,781,630	+	flgE	Sama_2315	0.54	-2.1
2,781,630	+	flgE	Sama_2315	0.54	-2.2
2,781,631	-	flgE	Sama_2315	0.54	-0.2
2,781,631	-	flgE	Sama_2315	0.54	-2.8
2,781,631	-	flgE	Sama_2315	0.54	-2.7
2,781,631	-	flgE	Sama_2315	0.54	-2.4
2,781,631	-	flgE	Sama_2315	0.54	-1.2
2,781,631	-	flgE	Sama_2315	0.54	+2.4
2,781,666	+	flgE	Sama_2315	0.57	-2.9
2,781,667	-	flgE	Sama_2315	0.57	-3.1
2,781,667	-	flgE	Sama_2315	0.57	-2.3
2,781,667	-	flgE	Sama_2315	0.57	-1.5
2,781,683	-	flgE	Sama_2315	0.58	-1.6
2,781,683	-	flgE	Sama_2315	0.58	-3.1
2,781,848	-	flgE	Sama_2315	0.70	-0.8
2,781,848	-	flgE	Sama_2315	0.70	-0.2
2,781,909	+	flgE	Sama_2315	0.75	-1.0
2,781,909	+	flgE	Sama_2315	0.75	-1.0
2,781,910	-	flgE	Sama_2315	0.75	-2.9
2,781,910	-	flgE	Sama_2315	0.75	+0.2
2,781,910	-	flgE	Sama_2315	0.75	-2.1
2,781,916	+	flgE	Sama_2315	0.75	-1.2
2,781,923	+	flgE	Sama_2315	0.76	-1.4
2,781,923	+	flgE	Sama_2315	0.76	-3.1
2,781,924	-	flgE	Sama_2315	0.76	-2.8
2,781,928	+	flgE	Sama_2315	0.76	-1.6
2,781,929	-	flgE	Sama_2315	0.76	-2.4
2,781,929	-	flgE	Sama_2315	0.76	-2.8
2,781,929	-	flgE	Sama_2315	0.76	-1.8
2,781,954	+	flgE	Sama_2315	0.78	-3.2
2,782,080	-	flgE	Sama_2315	0.87	-3.1
2,782,116	-	flgE	Sama_2315	0.90	-0.6
2,782,128	+				-0.8
2,782,128	+				-0.5
2,782,129	-				-2.6
2,782,129	-				-1.4
2,782,255	+				-2.3
2,782,256	-				-1.4
2,782,256	-				-1.5
2,782,256	-				+0.8
2,782,273	-				-2.1
2,782,401	+	flgD	Sama_2316	0.15	-0.8
2,782,402	-	flgD	Sama_2316	0.16	-1.6
2,782,402	-	flgD	Sama_2316	0.16	-2.1
2,782,402	-	flgD	Sama_2316	0.16	-0.8
2,782,402	-	flgD	Sama_2316	0.16	-1.0
2,782,416	-	flgD	Sama_2316	0.17	-1.2
2,782,461	+	flgD	Sama_2316	0.24	-1.2
2,782,461	+	flgD	Sama_2316	0.24	-0.8
2,782,461	+	flgD	Sama_2316	0.24	-1.8
2,782,462	-	flgD	Sama_2316	0.24	-3.2
2,782,462	-	flgD	Sama_2316	0.24	-1.4
2,782,462	-	flgD	Sama_2316	0.24	-0.8
2,782,462	-	flgD	Sama_2316	0.24	-3.3
2,782,462	-	flgD	Sama_2316	0.24	-1.0
2,782,462	-	flgD	Sama_2316	0.24	-2.6
2,782,462	-	flgD	Sama_2316	0.24	-2.5
2,782,465	+	flgD	Sama_2316	0.24	-1.5
2,782,466	-	flgD	Sama_2316	0.24	-2.1
2,782,466	-	flgD	Sama_2316	0.24	-1.0
2,782,653	-	flgD	Sama_2316	0.50	-2.8
2,782,653	-	flgD	Sama_2316	0.50	-2.1
2,782,653	-	flgD	Sama_2316	0.50	-1.5
2,782,653	-	flgD	Sama_2316	0.50	-2.5
2,782,653	-	flgD	Sama_2316	0.50	-1.9
2,782,653	-	flgD	Sama_2316	0.50	-1.8
2,782,653	-	flgD	Sama_2316	0.50	-2.4
2,782,653	-	flgD	Sama_2316	0.50	-2.0
2,782,653	-	flgD	Sama_2316	0.50	-2.6
2,782,680	-	flgD	Sama_2316	0.54	-1.6
2,782,680	-	flgD	Sama_2316	0.54	-1.0
2,782,680	-	flgD	Sama_2316	0.54	-1.5
2,782,736	-	flgD	Sama_2316	0.61	-2.1
2,782,736	-	flgD	Sama_2316	0.61	-0.2
2,783,000	-				-1.2
2,783,006	-				-3.6
2,783,022	+				-2.4
2,783,023	-				-1.0
2,783,077	-				-1.2
2,783,077	-				-0.5
2,783,077	-				-0.8
2,783,178	+	flgC	Sama_2317	0.32	-0.8
2,783,217	-	flgC	Sama_2317	0.42	-3.1
2,783,235	+	flgC	Sama_2317	0.46	-2.6
2,783,236	-	flgC	Sama_2317	0.46	-1.6
2,783,248	+	flgC	Sama_2317	0.49	-1.2
2,783,248	+	flgC	Sama_2317	0.49	-0.8
2,783,249	-	flgC	Sama_2317	0.50	-2.9