Strain Fitness in Shewanella amazonensis SB2B around Sama_2301

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,765,748	-		Sama_2300	0.20	+2.6
2,765,748	-		Sama_2300	0.20	-0.0
2,765,748	-		Sama_2300	0.20	-2.1
2,765,787	+		Sama_2300	0.24	+0.1
2,765,787	+		Sama_2300	0.24	+0.9
2,765,787	+		Sama_2300	0.24	-1.7
2,765,788	-		Sama_2300	0.24	-1.0
2,765,788	-		Sama_2300	0.24	+0.5
2,765,788	-		Sama_2300	0.24	-0.9
2,765,788	-		Sama_2300	0.24	-0.7
2,765,788	-		Sama_2300	0.24	+1.9
2,765,805	+		Sama_2300	0.25	-3.0
2,765,805	+		Sama_2300	0.25	+1.7
2,765,805	+		Sama_2300	0.25	-0.8
2,765,805	+		Sama_2300	0.25	-0.7
2,765,805	+		Sama_2300	0.25	+1.8
2,765,805	+		Sama_2300	0.25	+2.0
2,765,805	+		Sama_2300	0.25	-2.0
2,765,805	+		Sama_2300	0.25	-1.4
2,765,805	+		Sama_2300	0.25	-0.7
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	-0.0
2,765,806	-		Sama_2300	0.26	+1.1
2,765,806	-		Sama_2300	0.26	+1.7
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	+0.6
2,765,806	-		Sama_2300	0.26	-1.2
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	-0.2
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	-0.8
2,765,806	-		Sama_2300	0.26	-0.8
2,765,807	+		Sama_2300	0.26	+0.6
2,765,807	+		Sama_2300	0.26	+0.8
2,765,807	+		Sama_2300	0.26	-0.1
2,765,807	+		Sama_2300	0.26	-0.1
2,765,807	+		Sama_2300	0.26	+0.2
2,765,807	+		Sama_2300	0.26	+0.6
2,765,807	+		Sama_2300	0.26	+0.3
2,765,807	+		Sama_2300	0.26	-0.8
2,765,808	-		Sama_2300	0.26	+0.2
2,765,808	-		Sama_2300	0.26	+0.2
2,765,808	-		Sama_2300	0.26	+1.3
2,765,808	-		Sama_2300	0.26	+2.1
2,765,808	-		Sama_2300	0.26	+1.8
2,765,808	-		Sama_2300	0.26	-1.0
2,765,847	-		Sama_2300	0.29	+0.2
2,765,847	-		Sama_2300	0.29	-0.4
2,765,847	-		Sama_2300	0.29	-1.7
2,765,849	+		Sama_2300	0.30	-2.0
2,765,916	+		Sama_2300	0.36	+1.1
2,765,918	-		Sama_2300	0.36	+0.8
2,766,035	+		Sama_2300	0.47	+1.0
2,766,035	+		Sama_2300	0.47	+0.7
2,766,036	-		Sama_2300	0.47	+0.3
2,766,036	-		Sama_2300	0.47	+0.1
2,766,036	-		Sama_2300	0.47	+0.3
2,766,036	-		Sama_2300	0.47	+0.2
2,766,140	-		Sama_2300	0.57	+1.8
2,766,186	-		Sama_2300	0.61	-2.4
2,766,453	+		Sama_2300	0.86	-1.1
2,766,454	-		Sama_2300	0.86	+0.2
2,766,454	-		Sama_2300	0.86	+1.1
2,766,471	+		Sama_2300	0.87	+1.2
2,766,623	+				+0.9
2,766,699	+				-0.8
2,766,700	-				-1.7
2,766,718	-				-3.1
2,766,813	-				-0.2
2,766,813	-				-0.4
2,766,813	-				-2.2
2,766,813	-				-2.2
2,766,813	-				-1.8
2,766,813	-				-2.2
2,766,855	-		Sama_2301	0.11	-3.0
2,766,855	-		Sama_2301	0.11	-3.7
2,766,975	+		Sama_2301	0.19	-0.5
2,767,000	-		Sama_2301	0.21	-2.4
2,767,042	-		Sama_2301	0.24	-0.8
2,767,049	-		Sama_2301	0.25	-1.8
2,767,049	-		Sama_2301	0.25	-1.9
2,767,082	+		Sama_2301	0.27	-2.9
2,767,083	-		Sama_2301	0.27	-3.8
2,767,083	-		Sama_2301	0.27	-2.5
2,767,083	-		Sama_2301	0.27	-1.8
2,767,187	+		Sama_2301	0.34	-2.4
2,767,187	+		Sama_2301	0.34	-2.7
2,767,287	-		Sama_2301	0.41	-1.0
2,767,370	+		Sama_2301	0.47	-1.4
2,767,371	-		Sama_2301	0.47	-2.3
2,767,401	-		Sama_2301	0.49	-2.8
2,767,602	+		Sama_2301	0.63	+0.8
2,767,609	+		Sama_2301	0.64	-3.0
2,767,610	-		Sama_2301	0.64	-0.5
2,767,610	-		Sama_2301	0.64	-2.7
2,767,691	-		Sama_2301	0.69	-2.3
2,767,691	-		Sama_2301	0.69	-2.2
2,767,710	-		Sama_2301	0.71	-1.2
2,767,710	-		Sama_2301	0.71	-0.8
2,767,743	-		Sama_2301	0.73	-1.0
2,767,766	-		Sama_2301	0.75	+0.8
2,767,916	+		Sama_2301	0.85	-3.2
2,767,917	-		Sama_2301	0.85	-1.4
2,768,096	+				+0.6
2,768,097	-				-2.6
2,768,156	-				-1.0
2,768,169	-				+1.5
2,768,169	-				-1.2
2,768,173	-				-1.4
2,768,247	+				-2.1
2,768,252	+				-1.5
2,768,252	+				-1.5
2,768,252	+				-2.0
2,768,252	+				-1.2
2,768,252	+				-2.7
2,768,253	-				-2.9
2,768,253	-				-1.4
2,768,256	-				-1.0
2,768,286	-				-0.2
2,768,286	-				-0.9
2,768,313	-				-2.2
2,768,313	-				-0.3
2,768,360	-				-0.2
2,768,406	+				+0.2
2,768,447	+				-2.4
2,768,447	+				-1.2
2,768,447	+				-1.6
2,768,448	-				+0.5
2,768,448	-				-1.4
2,768,448	-				-1.6
2,768,448	-				+1.8
2,768,448	-				+0.8
2,768,448	-				-1.8
2,768,448	-				-1.5
2,768,448	-				-1.0
2,768,448	-				-3.7
2,768,448	-				-3.3
2,768,448	-				-1.3
2,768,448	-				-0.2
2,768,535	-	fliS	Sama_2302	0.28	-0.8
2,768,565	-	fliS	Sama_2302	0.36	-2.5
2,768,565	-	fliS	Sama_2302	0.36	-1.9
2,768,565	-	fliS	Sama_2302	0.36	-2.4
2,768,565	-	fliS	Sama_2302	0.36	-1.4
2,768,625	-	fliS	Sama_2302	0.50	-0.2
2,768,628	-	fliS	Sama_2302	0.51	-3.1
2,768,645	+	fliS	Sama_2302	0.55	-3.2
2,768,646	-	fliS	Sama_2302	0.55	-1.2
2,768,646	-	fliS	Sama_2302	0.55	-2.6
2,768,646	-	fliS	Sama_2302	0.55	-0.2
2,768,646	-	fliS	Sama_2302	0.55	-1.5
2,768,646	-	fliS	Sama_2302	0.55	-3.4
2,768,646	-	fliS	Sama_2302	0.55	-2.2
2,768,650	-	fliS	Sama_2302	0.56	-3.4
2,768,757	-	fliS	Sama_2302	0.82	-1.9
2,768,757	-	fliS	Sama_2302	0.82	-1.8
2,768,797	-				-1.4
2,768,797	-				-2.0
2,768,828	+				-2.0
2,768,829	-				-1.5
2,768,829	-				-0.8
2,768,829	-				-2.2
2,768,829	-				-0.5
2,768,829	-				-1.7
2,768,833	-				-0.5
2,768,833	-				-2.0
2,768,837	-				-1.0
2,768,837	-				-2.9
2,768,837	-				-1.5
2,768,837	-				-1.8
2,768,841	-				-1.0
2,768,885	+		Sama_2303	0.16	-0.8
2,768,902	-		Sama_2303	0.21	-2.2
2,768,902	-		Sama_2303	0.21	-2.8
2,768,954	+		Sama_2303	0.37	-2.2
2,768,955	-		Sama_2303	0.37	-1.8
2,768,955	-		Sama_2303	0.37	-3.2
2,768,955	-		Sama_2303	0.37	-1.5
2,768,981	-		Sama_2303	0.45	-3.4