Strain Fitness in Shewanella amazonensis SB2B around Sama_2299

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,763,386	-	fliF	Sama_2297	0.81	-2.5
2,763,415	-	fliF	Sama_2297	0.82	-2.1
2,763,415	-	fliF	Sama_2297	0.82	-2.6
2,763,415	-	fliF	Sama_2297	0.82	-1.2
2,763,419	-	fliF	Sama_2297	0.83	-1.4
2,763,419	-	fliF	Sama_2297	0.83	-1.5
2,763,457	-	fliF	Sama_2297	0.85	-1.8
2,763,518	-	fliF	Sama_2297	0.88	-2.7
2,763,668	+				-0.8
2,763,669	-				-1.8
2,763,703	+				-2.0
2,763,704	-				-1.4
2,763,839	+		Sama_2298	0.29	-0.8
2,763,840	-		Sama_2298	0.30	-1.5
2,763,845	-		Sama_2298	0.31	-1.9
2,763,930	-		Sama_2298	0.57	+0.8
2,763,930	-		Sama_2298	0.57	-2.4
2,764,009	+		Sama_2298	0.80	-1.0
2,764,010	-		Sama_2298	0.80	-0.2
2,764,010	-		Sama_2298	0.80	-2.8
2,764,010	-		Sama_2298	0.80	-1.7
2,764,010	-		Sama_2298	0.80	-2.9
2,764,010	-		Sama_2298	0.80	-2.6
2,764,068	-				-0.5
2,764,068	-				-1.5
2,764,068	-				-1.2
2,764,068	-				-1.4
2,764,068	-				-2.6
2,764,075	+				-2.2
2,764,109	-				-1.7
2,764,166	-				-1.5
2,764,166	-				-0.6
2,764,166	-				+1.8
2,764,197	+				-0.9
2,764,197	+				-0.3
2,764,198	-				-1.3
2,764,198	-				+1.6
2,764,208	+				-0.0
2,764,209	-				-0.1
2,764,216	+				+2.5
2,764,217	-				+0.2
2,764,245	+				-0.0
2,764,246	-				+0.2
2,764,246	-				-0.9
2,764,329	-				-0.8
2,764,329	-				+1.1
2,764,430	-		Sama_2299	0.17	-1.0
2,764,448	+		Sama_2299	0.19	-1.2
2,764,449	-		Sama_2299	0.19	-1.7
2,764,449	-		Sama_2299	0.19	+2.9
2,764,533	-		Sama_2299	0.25	+0.1
2,764,667	+		Sama_2299	0.35	+0.8
2,764,668	-		Sama_2299	0.35	-1.6
2,764,717	+		Sama_2299	0.39	-1.0
2,764,718	-		Sama_2299	0.39	-1.5
2,764,718	-		Sama_2299	0.39	-0.4
2,764,768	+		Sama_2299	0.42	+1.1
2,764,914	+		Sama_2299	0.53	+0.3
2,764,914	+		Sama_2299	0.53	+1.1
2,764,941	+		Sama_2299	0.55	+0.8
2,764,966	+		Sama_2299	0.57	-2.0
2,765,029	+		Sama_2299	0.62	-0.5
2,765,029	+		Sama_2299	0.62	+0.3
2,765,029	+		Sama_2299	0.62	+0.8
2,765,030	-		Sama_2299	0.62	-0.8
2,765,035	+		Sama_2299	0.62	+0.7
2,765,036	-		Sama_2299	0.62	-0.2
2,765,037	+		Sama_2299	0.62	+0.7
2,765,038	-		Sama_2299	0.63	+0.4
2,765,187	+		Sama_2299	0.74	+1.8
2,765,188	-		Sama_2299	0.74	-2.2
2,765,188	-		Sama_2299	0.74	-0.5
2,765,279	+		Sama_2299	0.81	+0.9
2,765,280	-		Sama_2299	0.81	+2.3
2,765,326	-		Sama_2299	0.84	+1.4
2,765,519	+				-0.2
2,765,519	+				+2.0
2,765,520	-				+2.3
2,765,520	-				+1.2
2,765,520	-				+1.3
2,765,583	-				+0.6
2,765,583	-				+0.5
2,765,583	-				+0.8
2,765,583	-				+0.2
2,765,594	+				+2.8
2,765,642	+		Sama_2300	0.10	+0.2
2,765,658	+		Sama_2300	0.12	-0.5
2,765,659	-		Sama_2300	0.12	-1.2
2,765,667	+		Sama_2300	0.13	+1.2
2,765,681	+		Sama_2300	0.14	-0.4
2,765,748	-		Sama_2300	0.20	+2.6
2,765,748	-		Sama_2300	0.20	-0.0
2,765,748	-		Sama_2300	0.20	-2.1
2,765,787	+		Sama_2300	0.24	+0.1
2,765,787	+		Sama_2300	0.24	+0.9
2,765,787	+		Sama_2300	0.24	-1.7
2,765,788	-		Sama_2300	0.24	-1.0
2,765,788	-		Sama_2300	0.24	+0.5
2,765,788	-		Sama_2300	0.24	-0.9
2,765,788	-		Sama_2300	0.24	-0.7
2,765,788	-		Sama_2300	0.24	+1.9
2,765,805	+		Sama_2300	0.25	-3.0
2,765,805	+		Sama_2300	0.25	+1.7
2,765,805	+		Sama_2300	0.25	-0.8
2,765,805	+		Sama_2300	0.25	-0.7
2,765,805	+		Sama_2300	0.25	+1.8
2,765,805	+		Sama_2300	0.25	+2.0
2,765,805	+		Sama_2300	0.25	-2.0
2,765,805	+		Sama_2300	0.25	-1.4
2,765,805	+		Sama_2300	0.25	-0.7
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	-0.0
2,765,806	-		Sama_2300	0.26	+1.1
2,765,806	-		Sama_2300	0.26	+1.7
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	+0.6
2,765,806	-		Sama_2300	0.26	-1.2
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	-0.2
2,765,806	-		Sama_2300	0.26	+0.2
2,765,806	-		Sama_2300	0.26	-0.8
2,765,806	-		Sama_2300	0.26	-0.8
2,765,807	+		Sama_2300	0.26	+0.6
2,765,807	+		Sama_2300	0.26	+0.8
2,765,807	+		Sama_2300	0.26	-0.1
2,765,807	+		Sama_2300	0.26	-0.1
2,765,807	+		Sama_2300	0.26	+0.2
2,765,807	+		Sama_2300	0.26	+0.6
2,765,807	+		Sama_2300	0.26	+0.3
2,765,807	+		Sama_2300	0.26	-0.8
2,765,808	-		Sama_2300	0.26	+0.2
2,765,808	-		Sama_2300	0.26	+0.2
2,765,808	-		Sama_2300	0.26	+1.3
2,765,808	-		Sama_2300	0.26	+2.1
2,765,808	-		Sama_2300	0.26	+1.8
2,765,808	-		Sama_2300	0.26	-1.0
2,765,847	-		Sama_2300	0.29	+0.2
2,765,847	-		Sama_2300	0.29	-0.4
2,765,847	-		Sama_2300	0.29	-1.7
2,765,849	+		Sama_2300	0.30	-2.0
2,765,916	+		Sama_2300	0.36	+1.1
2,765,918	-		Sama_2300	0.36	+0.8
2,766,035	+		Sama_2300	0.47	+1.0
2,766,035	+		Sama_2300	0.47	+0.7
2,766,036	-		Sama_2300	0.47	+0.3
2,766,036	-		Sama_2300	0.47	+0.1
2,766,036	-		Sama_2300	0.47	+0.3
2,766,036	-		Sama_2300	0.47	+0.2
2,766,140	-		Sama_2300	0.57	+1.8
2,766,186	-		Sama_2300	0.61	-2.4
2,766,453	+		Sama_2300	0.86	-1.1
2,766,454	-		Sama_2300	0.86	+0.2
2,766,454	-		Sama_2300	0.86	+1.1
2,766,471	+		Sama_2300	0.87	+1.2