Strain Fitness in Shewanella amazonensis SB2B around Sama_2297

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,761,155	+	fliG	Sama_2296	0.16	-1.8
2,761,283	-	fliG	Sama_2296	0.28	-3.0
2,761,373	+	fliG	Sama_2296	0.37	-1.2
2,761,374	-	fliG	Sama_2296	0.37	-2.6
2,761,374	-	fliG	Sama_2296	0.37	-2.2
2,761,490	-	fliG	Sama_2296	0.48	-1.2
2,761,490	-	fliG	Sama_2296	0.48	-3.0
2,761,490	-	fliG	Sama_2296	0.48	-2.3
2,761,584	-	fliG	Sama_2296	0.57	-2.1
2,761,915	-	fliG	Sama_2296	0.89	-1.5
2,762,102	-				-2.8
2,762,108	-				-1.4
2,762,108	-				+0.2
2,762,158	-				-1.4
2,762,158	-				-1.2
2,762,158	-				-2.6
2,762,164	-				-0.5
2,762,164	-				-2.6
2,762,387	-	fliF	Sama_2297	0.22	-1.8
2,762,387	-	fliF	Sama_2297	0.22	-0.2
2,762,387	-	fliF	Sama_2297	0.22	-1.0
2,762,387	-	fliF	Sama_2297	0.22	-3.3
2,762,387	-	fliF	Sama_2297	0.22	-0.5
2,762,387	-	fliF	Sama_2297	0.22	-1.4
2,762,387	-	fliF	Sama_2297	0.22	-0.2
2,762,445	-	fliF	Sama_2297	0.25	-1.9
2,762,445	-	fliF	Sama_2297	0.25	-1.2
2,762,445	-	fliF	Sama_2297	0.25	-3.3
2,762,445	-	fliF	Sama_2297	0.25	-2.1
2,762,445	-	fliF	Sama_2297	0.25	-0.5
2,762,445	-	fliF	Sama_2297	0.25	-2.0
2,762,570	-	fliF	Sama_2297	0.33	-1.0
2,762,570	-	fliF	Sama_2297	0.33	-1.9
2,762,589	-	fliF	Sama_2297	0.34	+0.0
2,762,589	-	fliF	Sama_2297	0.34	-1.0
2,762,589	-	fliF	Sama_2297	0.34	-1.6
2,762,589	-	fliF	Sama_2297	0.34	-2.4
2,762,589	-	fliF	Sama_2297	0.34	-2.4
2,762,653	-	fliF	Sama_2297	0.37	-1.6
2,762,653	-	fliF	Sama_2297	0.37	-1.0
2,762,657	-	fliF	Sama_2297	0.38	-1.4
2,763,087	-	fliF	Sama_2297	0.63	-2.0
2,763,102	-	fliF	Sama_2297	0.64	-2.5
2,763,102	-	fliF	Sama_2297	0.64	-3.0
2,763,102	-	fliF	Sama_2297	0.64	-2.4
2,763,104	-	fliF	Sama_2297	0.64	-4.8
2,763,386	-	fliF	Sama_2297	0.81	-2.5
2,763,415	-	fliF	Sama_2297	0.82	-2.1
2,763,415	-	fliF	Sama_2297	0.82	-2.6
2,763,415	-	fliF	Sama_2297	0.82	-1.2
2,763,419	-	fliF	Sama_2297	0.83	-1.4
2,763,419	-	fliF	Sama_2297	0.83	-1.5
2,763,457	-	fliF	Sama_2297	0.85	-1.8
2,763,518	-	fliF	Sama_2297	0.88	-2.7
2,763,668	+				-0.8
2,763,669	-				-1.8
2,763,703	+				-2.0
2,763,704	-				-1.4
2,763,839	+		Sama_2298	0.29	-0.8
2,763,840	-		Sama_2298	0.30	-1.5
2,763,845	-		Sama_2298	0.31	-1.9
2,763,930	-		Sama_2298	0.57	+0.8
2,763,930	-		Sama_2298	0.57	-2.4
2,764,009	+		Sama_2298	0.80	-1.0
2,764,010	-		Sama_2298	0.80	-0.2
2,764,010	-		Sama_2298	0.80	-2.8
2,764,010	-		Sama_2298	0.80	-1.7
2,764,010	-		Sama_2298	0.80	-2.9
2,764,010	-		Sama_2298	0.80	-2.6
2,764,068	-				-0.5
2,764,068	-				-1.5
2,764,068	-				-1.2
2,764,068	-				-1.4
2,764,068	-				-2.6
2,764,075	+				-2.2
2,764,109	-				-1.7
2,764,166	-				-1.5
2,764,166	-				-0.6
2,764,166	-				+1.8
2,764,197	+				-0.9
2,764,197	+				-0.3
2,764,198	-				-1.3
2,764,198	-				+1.6
2,764,208	+				-0.0
2,764,209	-				-0.1
2,764,216	+				+2.5
2,764,217	-				+0.2
2,764,245	+				-0.0
2,764,246	-				+0.2
2,764,246	-				-0.9
2,764,329	-				-0.8
2,764,329	-				+1.1
2,764,430	-		Sama_2299	0.17	-1.0
2,764,448	+		Sama_2299	0.19	-1.2
2,764,449	-		Sama_2299	0.19	-1.7
2,764,449	-		Sama_2299	0.19	+2.9
2,764,533	-		Sama_2299	0.25	+0.1
2,764,667	+		Sama_2299	0.35	+0.8
2,764,668	-		Sama_2299	0.35	-1.6