Strain Fitness in Shewanella amazonensis SB2B around Sama_2284

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,750,027	+	flhA	Sama_2283	0.57	-1.0
2,750,028	-	flhA	Sama_2283	0.57	-3.0
2,750,030	+	flhA	Sama_2283	0.57	-0.8
2,750,030	+	flhA	Sama_2283	0.57	-2.6
2,750,031	-	flhA	Sama_2283	0.57	-1.2
2,750,031	-	flhA	Sama_2283	0.57	-1.9
2,750,031	-	flhA	Sama_2283	0.57	-0.5
2,750,031	-	flhA	Sama_2283	0.57	-1.2
2,750,204	+	flhA	Sama_2283	0.66	-2.3
2,750,205	-	flhA	Sama_2283	0.66	+0.2
2,750,206	+	flhA	Sama_2283	0.66	-2.0
2,750,207	-	flhA	Sama_2283	0.66	-2.2
2,750,207	-	flhA	Sama_2283	0.66	-2.4
2,750,207	-	flhA	Sama_2283	0.66	-2.2
2,750,207	-	flhA	Sama_2283	0.66	-1.5
2,750,207	-	flhA	Sama_2283	0.66	-1.2
2,750,225	+	flhA	Sama_2283	0.67	-2.4
2,750,226	-	flhA	Sama_2283	0.67	-2.2
2,750,226	-	flhA	Sama_2283	0.67	-2.3
2,750,226	-	flhA	Sama_2283	0.67	-4.8
2,750,226	-	flhA	Sama_2283	0.67	-1.9
2,750,249	+	flhA	Sama_2283	0.68	-2.4
2,750,250	-	flhA	Sama_2283	0.68	-3.0
2,750,276	+	flhA	Sama_2283	0.69	-0.2
2,750,277	-	flhA	Sama_2283	0.69	-1.3
2,750,277	-	flhA	Sama_2283	0.69	-2.0
2,750,277	-	flhA	Sama_2283	0.69	-1.8
2,750,277	-	flhA	Sama_2283	0.69	-0.2
2,750,277	-	flhA	Sama_2283	0.69	-0.5
2,750,405	+	flhA	Sama_2283	0.75	-0.2
2,750,405	+	flhA	Sama_2283	0.75	+0.2
2,750,405	+	flhA	Sama_2283	0.75	+0.2
2,750,405	+	flhA	Sama_2283	0.75	+0.2
2,750,406	-	flhA	Sama_2283	0.75	-2.1
2,750,417	+	flhA	Sama_2283	0.76	-0.8
2,750,532	-	flhA	Sama_2283	0.81	-1.5
2,750,532	-	flhA	Sama_2283	0.81	-2.0
2,750,538	+	flhA	Sama_2283	0.81	-1.2
2,750,564	-	flhA	Sama_2283	0.83	-2.3
2,750,607	-	flhA	Sama_2283	0.85	-3.5
2,750,643	+	flhA	Sama_2283	0.86	-1.2
2,750,644	-	flhA	Sama_2283	0.86	-1.0
2,750,644	-	flhA	Sama_2283	0.86	-1.3
2,750,654	+	flhA	Sama_2283	0.87	-2.3
2,750,739	-				-1.3
2,750,739	-				-2.4
2,750,740	+				-2.2
2,750,741	-				-1.6
2,750,741	-				-2.0
2,750,758	-				-2.3
2,750,758	-				-0.8
2,750,758	-				-1.5
2,750,826	+				-0.2
2,750,827	-				-1.5
2,750,827	-				-3.7
2,750,827	-				-2.2
2,750,827	-				-2.6
2,750,827	-				-1.6
2,750,827	-				-2.4
2,750,960	-				-1.6
2,750,983	+				-0.2
2,750,984	-				+2.2
2,751,015	+				+1.6
2,751,015	+				-0.5
2,751,016	-				+3.4
2,751,017	+				-1.2
2,751,018	-				-1.6
2,751,018	-				+0.2
2,751,032	-				+1.5
2,751,032	-				+0.8
2,751,035	+				+0.6
2,751,036	-				-0.2
2,751,036	-				+0.2
2,751,121	+				-3.4
2,751,121	+				-1.3
2,751,122	-				-1.5
2,751,129	+				-0.8
2,751,130	-				-1.9
2,751,130	-				-1.0
2,751,146	+	flhB	Sama_2284	0.10	-1.2
2,751,182	+	flhB	Sama_2284	0.14	-1.1
2,751,182	+	flhB	Sama_2284	0.14	-2.3
2,751,182	+	flhB	Sama_2284	0.14	-3.5
2,751,260	+	flhB	Sama_2284	0.21	-1.2
2,751,323	-	flhB	Sama_2284	0.26	-1.3
2,751,323	-	flhB	Sama_2284	0.26	-2.0
2,751,361	-	flhB	Sama_2284	0.29	-1.5
2,751,361	-	flhB	Sama_2284	0.29	-2.4
2,751,592	-	flhB	Sama_2284	0.50	-3.3
2,751,636	+	flhB	Sama_2284	0.54	-3.2
2,751,756	-	flhB	Sama_2284	0.64	-1.4
2,751,831	+	flhB	Sama_2284	0.71	-2.4
2,751,831	+	flhB	Sama_2284	0.71	-2.6
2,751,831	+	flhB	Sama_2284	0.71	-0.6
2,751,832	-	flhB	Sama_2284	0.71	-1.2
2,751,832	-	flhB	Sama_2284	0.71	-3.0
2,751,832	-	flhB	Sama_2284	0.71	-2.3
2,751,832	-	flhB	Sama_2284	0.71	-0.2
2,751,832	-	flhB	Sama_2284	0.71	+0.8
2,751,921	-	flhB	Sama_2284	0.79	-2.3
2,751,921	-	flhB	Sama_2284	0.79	-2.5
2,751,921	-	flhB	Sama_2284	0.79	-1.3
2,752,130	+				-1.2
2,752,146	-				-3.0
2,752,282	-	fliR	Sama_2285	0.15	-2.0
2,752,314	+	fliR	Sama_2285	0.19	-1.3
2,752,315	-	fliR	Sama_2285	0.19	-0.2
2,752,315	-	fliR	Sama_2285	0.19	-0.8
2,752,319	-	fliR	Sama_2285	0.20	-3.2
2,752,319	-	fliR	Sama_2285	0.20	-0.5
2,752,319	-	fliR	Sama_2285	0.20	-1.6
2,752,418	+	fliR	Sama_2285	0.32	-3.3
2,752,418	+	fliR	Sama_2285	0.32	-1.5
2,752,419	-	fliR	Sama_2285	0.33	-3.0
2,752,419	-	fliR	Sama_2285	0.33	-2.3
2,752,419	-	fliR	Sama_2285	0.33	-0.8
2,752,419	-	fliR	Sama_2285	0.33	-1.3
2,752,419	-	fliR	Sama_2285	0.33	-2.7
2,752,446	-	fliR	Sama_2285	0.36	-1.2
2,752,446	-	fliR	Sama_2285	0.36	-1.9
2,752,446	-	fliR	Sama_2285	0.36	-0.8
2,752,446	-	fliR	Sama_2285	0.36	-3.1
2,752,450	-	fliR	Sama_2285	0.37	-1.5
2,752,471	-	fliR	Sama_2285	0.39	-0.2
2,752,471	-	fliR	Sama_2285	0.39	+0.8
2,752,485	+	fliR	Sama_2285	0.41	-2.7
2,752,780	+	fliR	Sama_2285	0.78	-4.3
2,752,781	-	fliR	Sama_2285	0.78	-0.8
2,752,845	+	fliR	Sama_2285	0.87	-2.2
2,752,845	+	fliR	Sama_2285	0.87	+0.2
2,752,846	-	fliR	Sama_2285	0.87	-2.5
2,752,846	-	fliR	Sama_2285	0.87	-3.0
2,752,872	+				-1.8
2,752,873	-				-0.2
2,752,873	-				-0.5
2,752,905	+				-1.0
2,752,905	+				-0.5
2,752,905	+				-1.0
2,752,905	+				-0.8
2,752,905	+				-0.5
2,752,906	-				-3.3
2,752,906	-				+0.2
2,752,908	-				-0.9
2,752,908	-				+0.2
2,752,918	-				-2.3
2,752,918	-				-2.9
2,752,918	-				-1.9
2,752,960	-				+0.8
2,753,147	+		Sama_2286	0.73	-2.3
2,753,148	-		Sama_2286	0.73	-3.2
2,753,148	-		Sama_2286	0.73	-2.5
2,753,148	-		Sama_2286	0.73	-0.5