Strain Fitness in Shewanella amazonensis SB2B around Sama_2273

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,737,934	-				+3.5
2,738,048	-		Sama_2271	0.29	+0.4
2,738,048	-		Sama_2271	0.29	-1.3
2,738,145	+		Sama_2271	0.53	+2.0
2,738,146	-		Sama_2271	0.53	+0.1
2,738,211	-		Sama_2271	0.69	-0.8
2,738,211	-		Sama_2271	0.69	-2.3
2,738,269	+		Sama_2271	0.83	-1.6
2,738,269	+		Sama_2271	0.83	+0.1
2,738,270	-		Sama_2271	0.83	-2.1
2,738,271	+		Sama_2271	0.84	-1.2
2,738,271	+		Sama_2271	0.84	-1.3
2,738,272	-		Sama_2271	0.84	-0.5
2,738,272	-		Sama_2271	0.84	-2.3
2,738,272	-		Sama_2271	0.84	+0.8
2,738,272	-		Sama_2271	0.84	-0.6
2,738,272	-		Sama_2271	0.84	-2.5
2,738,272	-		Sama_2271	0.84	-1.1
2,738,299	+				-1.7
2,738,299	+				-2.6
2,738,300	-				-2.7
2,738,300	-				+2.4
2,738,300	-				-3.1
2,738,300	-				-1.6
2,738,344	+				-2.1
2,738,363	+				-3.1
2,738,400	-				-1.9
2,738,400	-				-1.1
2,738,400	-				+0.8
2,738,490	-		Sama_2272	0.17	-1.9
2,738,505	-		Sama_2272	0.20	-0.5
2,738,505	-		Sama_2272	0.20	+1.8
2,738,505	-		Sama_2272	0.20	-0.2
2,738,567	-		Sama_2272	0.33	-2.3
2,738,721	-		Sama_2272	0.64	-1.5
2,738,721	-		Sama_2272	0.64	+2.6
2,738,721	-		Sama_2272	0.64	-0.3
2,738,724	-		Sama_2272	0.64	-0.5
2,738,845	-		Sama_2272	0.89	+1.1
2,738,845	-		Sama_2272	0.89	+1.5
2,738,845	-		Sama_2272	0.89	+1.1
2,738,900	+				-0.6
2,738,900	+				+2.8
2,738,901	-				+1.0
2,738,901	-				+1.4
2,738,901	-				-1.9
2,738,905	-				-2.1
2,738,905	-				-2.3
2,738,905	-				+1.4
2,738,905	-				+5.2
2,738,905	-				-2.2
2,738,905	-				+0.1
2,738,905	-				-1.2
2,738,914	-				-1.0
2,738,914	-				-1.6
2,738,914	-				-3.0
2,738,917	-				-0.2
2,738,917	-				+0.0
2,738,917	-				-2.9
2,738,917	-				-2.0
2,738,917	-				-0.5
2,738,933	-				-2.2
2,738,991	-				-1.5
2,738,999	-				-1.3
2,738,999	-				-1.9
2,739,103	-		Sama_2273	0.18	-2.3
2,739,116	-		Sama_2273	0.19	-0.9
2,739,119	-		Sama_2273	0.20	-0.2
2,739,132	-		Sama_2273	0.21	-1.2
2,739,132	-		Sama_2273	0.21	+0.2
2,739,132	-		Sama_2273	0.21	-0.4
2,739,162	-		Sama_2273	0.24	-1.0
2,739,258	+		Sama_2273	0.32	-0.2
2,739,284	-		Sama_2273	0.35	+2.0
2,739,333	+		Sama_2273	0.39	-1.0
2,739,334	-		Sama_2273	0.39	-1.8
2,739,340	+		Sama_2273	0.40	-1.6
2,739,341	-		Sama_2273	0.40	-0.7
2,739,343	+		Sama_2273	0.40	-2.9
2,739,343	+		Sama_2273	0.40	-2.6
2,739,344	-		Sama_2273	0.40	-0.1
2,739,344	-		Sama_2273	0.40	-0.2
2,739,484	+		Sama_2273	0.53	-1.8
2,739,501	+		Sama_2273	0.55	-2.3
2,739,502	-		Sama_2273	0.55	-2.2
2,739,508	-		Sama_2273	0.56	+1.0
2,739,584	-		Sama_2273	0.63	+0.5
2,739,721	+		Sama_2273	0.75	-2.4
2,739,740	-		Sama_2273	0.77	-2.8
2,739,850	+		Sama_2273	0.87	+1.8
2,739,850	+		Sama_2273	0.87	-2.2
2,739,851	-		Sama_2273	0.87	-1.3
2,739,851	-		Sama_2273	0.87	+0.8
2,739,851	-		Sama_2273	0.87	-2.0
2,739,851	-		Sama_2273	0.87	-1.2
2,739,862	+		Sama_2273	0.88	-1.3
2,739,862	+		Sama_2273	0.88	+0.8
2,739,863	-		Sama_2273	0.88	-0.8
2,739,865	-		Sama_2273	0.89	-1.0
2,740,029	+				-2.3
2,740,029	+				+0.8
2,740,030	-				-0.6
2,740,030	-				+0.1
2,740,030	-				-1.0
2,740,030	-				+2.2
2,740,037	-				+0.2
2,740,037	-				-1.9
2,740,059	+		Sama_2274	0.11	-2.6
2,740,060	-		Sama_2274	0.11	-1.3
2,740,073	+		Sama_2274	0.13	-1.3
2,740,074	-		Sama_2274	0.13	-0.8
2,740,117	+		Sama_2274	0.18	-0.8
2,740,135	+		Sama_2274	0.21	-0.8
2,740,143	+		Sama_2274	0.22	-0.5
2,740,144	-		Sama_2274	0.22	-1.6
2,740,197	+		Sama_2274	0.29	-1.0
2,740,197	+		Sama_2274	0.29	-2.2
2,740,197	+		Sama_2274	0.29	-1.3
2,740,198	-		Sama_2274	0.29	-1.5
2,740,198	-		Sama_2274	0.29	+0.2
2,740,198	-		Sama_2274	0.29	-2.0
2,740,198	-		Sama_2274	0.29	+0.1
2,740,201	+		Sama_2274	0.29	-2.9
2,740,202	-		Sama_2274	0.29	-0.1
2,740,202	-		Sama_2274	0.29	-0.3
2,740,202	-		Sama_2274	0.29	-3.3
2,740,202	-		Sama_2274	0.29	+0.2
2,740,202	-		Sama_2274	0.29	-2.5
2,740,202	-		Sama_2274	0.29	-1.0
2,740,216	+		Sama_2274	0.31	-2.6
2,740,217	-		Sama_2274	0.31	-1.2
2,740,217	-		Sama_2274	0.31	-2.6
2,740,217	-		Sama_2274	0.31	-0.8
2,740,217	-		Sama_2274	0.31	+1.8
2,740,217	-		Sama_2274	0.31	-0.4
2,740,217	-		Sama_2274	0.31	-0.1
2,740,218	+		Sama_2274	0.31	-2.4
2,740,218	+		Sama_2274	0.31	-1.3
2,740,218	+		Sama_2274	0.31	-2.1
2,740,218	+		Sama_2274	0.31	-0.7
2,740,218	+		Sama_2274	0.31	-1.6
2,740,218	+		Sama_2274	0.31	-3.2
2,740,219	-		Sama_2274	0.31	+0.3
2,740,219	-		Sama_2274	0.31	+0.2
2,740,219	-		Sama_2274	0.31	-0.2
2,740,219	-		Sama_2274	0.31	-1.7
2,740,219	-		Sama_2274	0.31	-1.0
2,740,219	-		Sama_2274	0.31	-0.3
2,740,219	-		Sama_2274	0.31	+0.4
2,740,219	-		Sama_2274	0.31	-0.5
2,740,219	-		Sama_2274	0.31	-2.0
2,740,219	-		Sama_2274	0.31	+0.2
2,740,219	-		Sama_2274	0.31	-2.4
2,740,222	+		Sama_2274	0.32	+1.2
2,740,223	-		Sama_2274	0.32	-0.1
2,740,223	-		Sama_2274	0.32	-0.9
2,740,223	-		Sama_2274	0.32	+0.2
2,740,223	-		Sama_2274	0.32	-2.6
2,740,223	-		Sama_2274	0.32	-2.0
2,740,223	-		Sama_2274	0.32	-1.0
2,740,251	-		Sama_2274	0.35	-0.4
2,740,270	+		Sama_2274	0.38	-1.8
2,740,285	+		Sama_2274	0.40	-1.2
2,740,286	-		Sama_2274	0.40	-0.9
2,740,321	+		Sama_2274	0.44	-1.2
2,740,322	-		Sama_2274	0.44	-2.2
2,740,322	-		Sama_2274	0.44	-1.0
2,740,352	-		Sama_2274	0.48	+0.2
2,740,442	-		Sama_2274	0.59	-0.2
2,740,531	+		Sama_2274	0.71	-2.8
2,740,531	+		Sama_2274	0.71	-0.9
2,740,531	+		Sama_2274	0.71	-2.7
2,740,531	+		Sama_2274	0.71	-0.8
2,740,531	+		Sama_2274	0.71	+0.8
2,740,531	+		Sama_2274	0.71	-1.8
2,740,531	-		Sama_2274	0.71	-2.1
2,740,531	+		Sama_2274	0.71	-1.3
2,740,531	+		Sama_2274	0.71	-1.5
2,740,532	-		Sama_2274	0.71	-2.1
2,740,532	-		Sama_2274	0.71	+0.5
2,740,532	-		Sama_2274	0.71	+2.0
2,740,532	-		Sama_2274	0.71	-0.1
2,740,532	-		Sama_2274	0.71	-1.8
2,740,532	-		Sama_2274	0.71	+0.2
2,740,532	-		Sama_2274	0.71	+1.0
2,740,532	-		Sama_2274	0.71	-0.3
2,740,532	-		Sama_2274	0.71	-1.2
2,740,532	-		Sama_2274	0.71	-0.0
2,740,544	-		Sama_2274	0.72	-2.3
2,740,544	-		Sama_2274	0.72	-1.2
2,740,564	+		Sama_2274	0.75	-2.3
2,740,564	+		Sama_2274	0.75	-0.2
2,740,584	+		Sama_2274	0.77	-1.5
2,740,584	+		Sama_2274	0.77	-1.5
2,740,585	-		Sama_2274	0.78	-1.8
2,740,585	-		Sama_2274	0.78	-0.8
2,740,623	+		Sama_2274	0.82	+1.0
2,740,623	+		Sama_2274	0.82	+0.8
2,740,624	-		Sama_2274	0.82	-1.6
2,740,624	-		Sama_2274	0.82	-1.0
2,740,627	-		Sama_2274	0.83	+0.5
2,740,721	-				-2.3
2,740,721	-				-0.6
2,740,778	+				-2.3
2,740,779	-				-0.5
2,740,779	-				+0.4
2,740,786	+				+0.1
2,740,787	-				-0.5
2,740,849	-		Sama_2275	0.15	-0.8
2,740,849	-		Sama_2275	0.15	-0.8
2,740,849	-		Sama_2275	0.15	-1.2
2,740,906	-		Sama_2275	0.29	-1.0