Strain Fitness in Shewanella amazonensis SB2B around Sama_2270

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,736,533	-		Sama_2269	0.47	-0.6
2,736,556	+		Sama_2269	0.48	+0.0
2,736,556	+		Sama_2269	0.48	-1.0
2,736,564	+		Sama_2269	0.49	-0.2
2,736,564	+		Sama_2269	0.49	+2.6
2,736,564	+		Sama_2269	0.49	-1.3
2,736,564	+		Sama_2269	0.49	+0.3
2,736,596	-		Sama_2269	0.50	+0.2
2,736,675	+		Sama_2269	0.55	-1.1
2,736,675	+		Sama_2269	0.55	-0.8
2,736,676	-		Sama_2269	0.55	+0.6
2,736,708	+		Sama_2269	0.56	-1.2
2,736,708	+		Sama_2269	0.56	-2.3
2,736,708	+		Sama_2269	0.56	-0.3
2,736,708	+		Sama_2269	0.56	-1.0
2,736,709	-		Sama_2269	0.56	+2.3
2,736,751	-		Sama_2269	0.59	-1.6
2,736,840	+		Sama_2269	0.64	-0.2
2,736,840	+		Sama_2269	0.64	-1.9
2,736,840	+		Sama_2269	0.64	+2.4
2,736,840	+		Sama_2269	0.64	-1.8
2,736,841	-		Sama_2269	0.64	+0.1
2,737,068	+		Sama_2269	0.76	+0.7
2,737,119	+		Sama_2269	0.79	+0.9
2,737,130	+		Sama_2269	0.79	-0.5
2,737,131	-		Sama_2269	0.79	+0.8
2,737,131	-		Sama_2269	0.79	+1.0
2,737,178	+		Sama_2269	0.82	+0.2
2,737,179	-		Sama_2269	0.82	+2.7
2,737,179	-		Sama_2269	0.82	-0.8
2,737,231	+		Sama_2269	0.85	-0.8
2,737,276	+		Sama_2269	0.87	-0.3
2,737,276	+		Sama_2269	0.87	+1.9
2,737,276	+		Sama_2269	0.87	+0.3
2,737,388	+				-1.3
2,737,389	-				-0.9
2,737,440	+				+0.2
2,737,441	-				+0.2
2,737,441	-				-0.6
2,737,459	+				+0.9
2,737,525	-				+1.6
2,737,525	-				+0.1
2,737,539	-				-1.8
2,737,539	-				-1.9
2,737,550	+		Sama_2270	0.10	+0.0
2,737,550	+		Sama_2270	0.10	-2.6
2,737,551	-		Sama_2270	0.11	+4.1
2,737,601	+		Sama_2270	0.27	-2.6
2,737,601	+		Sama_2270	0.27	-1.5
2,737,602	-		Sama_2270	0.27	-1.6
2,737,602	-		Sama_2270	0.27	+1.2
2,737,720	+		Sama_2270	0.66	-0.2
2,737,720	+		Sama_2270	0.66	-0.5
2,737,720	+		Sama_2270	0.66	-0.9
2,737,721	-		Sama_2270	0.67	+0.1
2,737,721	-		Sama_2270	0.67	+2.0
2,737,721	-		Sama_2270	0.67	+0.8
2,737,721	-		Sama_2270	0.67	-1.7
2,737,724	+		Sama_2270	0.68	+0.8
2,737,725	-		Sama_2270	0.68	+0.2
2,737,725	-		Sama_2270	0.68	-1.3
2,737,725	-		Sama_2270	0.68	-0.6
2,737,753	+		Sama_2270	0.77	-1.2
2,737,753	+		Sama_2270	0.77	+2.5
2,737,753	+		Sama_2270	0.77	-1.3
2,737,753	+		Sama_2270	0.77	+1.1
2,737,805	+				-0.2
2,737,805	+				-0.4
2,737,805	+				-1.5
2,737,806	-				+0.0
2,737,858	+				-0.2
2,737,858	+				-0.0
2,737,877	+				-0.5
2,737,878	-				+1.0
2,737,878	-				-2.3
2,737,934	-				+3.5
2,738,048	-		Sama_2271	0.29	+0.4
2,738,048	-		Sama_2271	0.29	-1.3
2,738,145	+		Sama_2271	0.53	+2.0
2,738,146	-		Sama_2271	0.53	+0.1
2,738,211	-		Sama_2271	0.69	-0.8
2,738,211	-		Sama_2271	0.69	-2.3
2,738,269	+		Sama_2271	0.83	-1.6
2,738,269	+		Sama_2271	0.83	+0.1
2,738,270	-		Sama_2271	0.83	-2.1
2,738,271	+		Sama_2271	0.84	-1.2
2,738,271	+		Sama_2271	0.84	-1.3
2,738,272	-		Sama_2271	0.84	-0.5
2,738,272	-		Sama_2271	0.84	-2.3
2,738,272	-		Sama_2271	0.84	+0.8
2,738,272	-		Sama_2271	0.84	-0.6
2,738,272	-		Sama_2271	0.84	-2.5
2,738,272	-		Sama_2271	0.84	-1.1
2,738,299	+				-1.7
2,738,299	+				-2.6
2,738,300	-				-2.7
2,738,300	-				+2.4
2,738,300	-				-3.1
2,738,300	-				-1.6
2,738,344	+				-2.1
2,738,363	+				-3.1
2,738,400	-				-1.9
2,738,400	-				-1.1
2,738,400	-				+0.8
2,738,490	-		Sama_2272	0.17	-1.9
2,738,505	-		Sama_2272	0.20	-0.5
2,738,505	-		Sama_2272	0.20	+1.8
2,738,505	-		Sama_2272	0.20	-0.2
2,738,567	-		Sama_2272	0.33	-2.3
2,738,721	-		Sama_2272	0.64	-1.5
2,738,721	-		Sama_2272	0.64	+2.6
2,738,721	-		Sama_2272	0.64	-0.3
2,738,724	-		Sama_2272	0.64	-0.5