Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2229 and Sama_2230 overlap by 4 nucleotides Sama_2230 and Sama_2231 are separated by 139 nucleotides Sama_2231 and Sama_2232 are separated by 27 nucleotides
Sama_2229: Sama_2229 - hypothetical protein (RefSeq), at 2,693,918 to 2,694,610
_2229
Sama_2230: Sama_2230 - hypothetical protein (RefSeq), at 2,694,607 to 2,695,344
_2230
Sama_2231: Sama_2231 - glucokinase (EC 2.7.1.2) (from data) , at 2,695,484 to 2,696,383
_2231
Sama_2232: Sama_2232 - cysQ protein (RefSeq), at 2,696,411 to 2,697,256
_2232
Position (kb)
2695
2696
2697 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2694.536 kb on + strand, within Sama_2229 at 2694.536 kb on + strand, within Sama_2229 at 2694.537 kb on - strand, within Sama_2229 at 2694.537 kb on - strand, within Sama_2229 at 2694.537 kb on - strand, within Sama_2229 at 2694.537 kb on - strand, within Sama_2229 at 2694.540 kb on - strand, within Sama_2229 at 2694.540 kb on - strand, within Sama_2229 at 2694.647 kb on + strand at 2694.647 kb on + strand at 2694.647 kb on + strand at 2694.647 kb on + strand at 2694.648 kb on - strand at 2694.648 kb on - strand at 2694.648 kb on - strand at 2694.648 kb on - strand at 2694.648 kb on - strand at 2694.691 kb on + strand, within Sama_2230 at 2694.787 kb on - strand, within Sama_2230 at 2694.787 kb on - strand, within Sama_2230 at 2694.787 kb on - strand, within Sama_2230 at 2694.812 kb on - strand, within Sama_2230 at 2694.812 kb on - strand, within Sama_2230 at 2694.839 kb on - strand, within Sama_2230 at 2694.839 kb on - strand, within Sama_2230 at 2694.887 kb on - strand, within Sama_2230 at 2694.956 kb on + strand, within Sama_2230 at 2694.956 kb on + strand, within Sama_2230 at 2694.956 kb on + strand, within Sama_2230 at 2694.956 kb on + strand, within Sama_2230 at 2694.956 kb on + strand, within Sama_2230 at 2694.957 kb on - strand, within Sama_2230 at 2694.957 kb on - strand, within Sama_2230 at 2694.957 kb on - strand, within Sama_2230 at 2695.060 kb on + strand, within Sama_2230 at 2695.061 kb on - strand, within Sama_2230 at 2695.111 kb on + strand, within Sama_2230 at 2695.149 kb on - strand, within Sama_2230 at 2695.171 kb on + strand, within Sama_2230 at 2695.222 kb on + strand, within Sama_2230 at 2695.222 kb on + strand, within Sama_2230 at 2695.223 kb on - strand, within Sama_2230 at 2695.320 kb on - strand at 2695.349 kb on - strand at 2695.360 kb on + strand at 2695.383 kb on - strand at 2695.537 kb on - strand at 2695.537 kb on - strand at 2695.547 kb on + strand at 2695.548 kb on - strand at 2695.548 kb on - strand at 2695.581 kb on + strand, within Sama_2231 at 2695.581 kb on + strand, within Sama_2231 at 2695.581 kb on + strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.582 kb on - strand, within Sama_2231 at 2695.611 kb on + strand, within Sama_2231 at 2695.611 kb on + strand, within Sama_2231 at 2695.612 kb on - strand, within Sama_2231 at 2695.612 kb on - strand, within Sama_2231 at 2695.612 kb on - strand, within Sama_2231 at 2695.612 kb on - strand, within Sama_2231 at 2695.612 kb on - strand, within Sama_2231 at 2695.634 kb on - strand, within Sama_2231 at 2695.634 kb on - strand, within Sama_2231 at 2695.634 kb on - strand, within Sama_2231 at 2695.634 kb on - strand, within Sama_2231 at 2695.670 kb on - strand, within Sama_2231 at 2695.670 kb on - strand, within Sama_2231 at 2695.670 kb on - strand, within Sama_2231 at 2695.670 kb on - strand, within Sama_2231 at 2695.721 kb on + strand, within Sama_2231 at 2695.751 kb on + strand, within Sama_2231 at 2695.752 kb on - strand, within Sama_2231 at 2695.752 kb on - strand, within Sama_2231 at 2696.039 kb on + strand, within Sama_2231 at 2696.040 kb on - strand, within Sama_2231 at 2696.100 kb on - strand, within Sama_2231 at 2696.100 kb on - strand, within Sama_2231 at 2696.134 kb on + strand, within Sama_2231 at 2696.134 kb on + strand, within Sama_2231 at 2696.170 kb on + strand, within Sama_2231 at 2696.171 kb on - strand, within Sama_2231 at 2696.171 kb on - strand, within Sama_2231 at 2696.171 kb on - strand, within Sama_2231 at 2696.173 kb on - strand, within Sama_2231 at 2696.278 kb on - strand, within Sama_2231 at 2696.296 kb on + strand at 2696.297 kb on - strand at 2696.297 kb on - strand at 2696.297 kb on - strand at 2696.297 kb on - strand at 2696.303 kb on - strand at 2696.413 kb on - strand at 2696.413 kb on - strand at 2696.503 kb on - strand, within Sama_2232 at 2696.808 kb on + strand, within Sama_2232 at 2696.809 kb on - strand, within Sama_2232 at 2696.809 kb on - strand, within Sama_2232 at 2696.816 kb on - strand, within Sama_2232 at 2696.978 kb on - strand, within Sama_2232 at 2697.043 kb on + strand, within Sama_2232 at 2697.044 kb on - strand, within Sama_2232 at 2697.117 kb on + strand, within Sama_2232 at 2697.118 kb on - strand, within Sama_2232 at 2697.128 kb on + strand, within Sama_2232 at 2697.167 kb on - strand, within Sama_2232 at 2697.181 kb on + strand at 2697.182 kb on - strand at 2697.202 kb on + strand at 2697.202 kb on + strand at 2697.202 kb on + strand at 2697.202 kb on + strand at 2697.202 kb on + strand at 2697.202 kb on + strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.203 kb on - strand at 2697.204 kb on + strand at 2697.204 kb on + strand at 2697.205 kb on - strand at 2697.205 kb on - strand at 2697.205 kb on - strand at 2697.258 kb on - strand at 2697.282 kb on + strand at 2697.316 kb on - strand at 2697.316 kb on - strand at 2697.318 kb on + strand at 2697.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 2,694,536 + Sama_2229 0.89 +0.8 2,694,536 + Sama_2229 0.89 -1.6 2,694,537 - Sama_2229 0.89 +0.6 2,694,537 - Sama_2229 0.89 -0.8 2,694,537 - Sama_2229 0.89 +1.1 2,694,537 - Sama_2229 0.89 -0.5 2,694,540 - Sama_2229 0.90 -1.6 2,694,540 - Sama_2229 0.90 +2.4 2,694,647 + +1.5 2,694,647 + -1.4 2,694,647 + +1.0 2,694,647 + -0.1 2,694,648 - +2.0 2,694,648 - +1.1 2,694,648 - -0.6 2,694,648 - +0.2 2,694,648 - -1.0 2,694,691 + Sama_2230 0.11 +0.3 2,694,787 - Sama_2230 0.24 +0.2 2,694,787 - Sama_2230 0.24 +0.5 2,694,787 - Sama_2230 0.24 +0.1 2,694,812 - Sama_2230 0.28 -1.3 2,694,812 - Sama_2230 0.28 -1.0 2,694,839 - Sama_2230 0.31 -0.1 2,694,839 - Sama_2230 0.31 +2.1 2,694,887 - Sama_2230 0.38 +0.0 2,694,956 + Sama_2230 0.47 +1.8 2,694,956 + Sama_2230 0.47 -1.9 2,694,956 + Sama_2230 0.47 -0.2 2,694,956 + Sama_2230 0.47 +0.5 2,694,956 + Sama_2230 0.47 -1.2 2,694,957 - Sama_2230 0.47 +0.9 2,694,957 - Sama_2230 0.47 -1.6 2,694,957 - Sama_2230 0.47 -0.8 2,695,060 + Sama_2230 0.61 -0.5 2,695,061 - Sama_2230 0.62 -0.4 2,695,111 + Sama_2230 0.68 +0.3 2,695,149 - Sama_2230 0.73 +0.0 2,695,171 + Sama_2230 0.76 +1.0 2,695,222 + Sama_2230 0.83 -0.9 2,695,222 + Sama_2230 0.83 -1.6 2,695,223 - Sama_2230 0.83 +0.2 2,695,320 - +0.5 2,695,349 - -1.2 2,695,360 + +0.4 2,695,383 - +2.7 2,695,537 - -1.2 2,695,537 - +0.0 2,695,547 + -0.4 2,695,548 - +0.5 2,695,548 - -1.4 2,695,581 + Sama_2231 0.11 +0.2 2,695,581 + Sama_2231 0.11 -1.4 2,695,581 + Sama_2231 0.11 -1.0 2,695,582 - Sama_2231 0.11 -1.5 2,695,582 - Sama_2231 0.11 -3.0 2,695,582 - Sama_2231 0.11 -0.6 2,695,582 - Sama_2231 0.11 -0.8 2,695,582 - Sama_2231 0.11 +1.2 2,695,582 - Sama_2231 0.11 +1.3 2,695,611 + Sama_2231 0.14 +1.3 2,695,611 + Sama_2231 0.14 -1.0 2,695,612 - Sama_2231 0.14 -2.4 2,695,612 - Sama_2231 0.14 +0.8 2,695,612 - Sama_2231 0.14 +2.0 2,695,612 - Sama_2231 0.14 -0.2 2,695,612 - Sama_2231 0.14 -0.8 2,695,634 - Sama_2231 0.17 +0.2 2,695,634 - Sama_2231 0.17 -1.8 2,695,634 - Sama_2231 0.17 -0.5 2,695,634 - Sama_2231 0.17 -2.3 2,695,670 - Sama_2231 0.21 +0.6 2,695,670 - Sama_2231 0.21 -2.5 2,695,670 - Sama_2231 0.21 -0.5 2,695,670 - Sama_2231 0.21 -1.8 2,695,721 + Sama_2231 0.26 +1.0 2,695,751 + Sama_2231 0.30 -1.2 2,695,752 - Sama_2231 0.30 -1.2 2,695,752 - Sama_2231 0.30 -1.9 2,696,039 + Sama_2231 0.62 +1.8 2,696,040 - Sama_2231 0.62 -1.0 2,696,100 - Sama_2231 0.68 -1.2 2,696,100 - Sama_2231 0.68 -2.0 2,696,134 + Sama_2231 0.72 +0.6 2,696,134 + Sama_2231 0.72 -0.4 2,696,170 + Sama_2231 0.76 +0.8 2,696,171 - Sama_2231 0.76 -0.8 2,696,171 - Sama_2231 0.76 -0.6 2,696,171 - Sama_2231 0.76 -2.0 2,696,173 - Sama_2231 0.77 -1.4 2,696,278 - Sama_2231 0.88 +2.3 2,696,296 + -0.2 2,696,297 - +1.3 2,696,297 - +3.0 2,696,297 - -2.0 2,696,297 - +2.1 2,696,303 - +0.2 2,696,413 - +0.5 2,696,413 - -0.5 2,696,503 - Sama_2232 0.11 +1.8 2,696,808 + Sama_2232 0.47 -1.4 2,696,809 - Sama_2232 0.47 +1.2 2,696,809 - Sama_2232 0.47 -2.4 2,696,816 - Sama_2232 0.48 -0.6 2,696,978 - Sama_2232 0.67 +2.8 2,697,043 + Sama_2232 0.75 +0.8 2,697,044 - Sama_2232 0.75 +0.5 2,697,117 + Sama_2232 0.83 -0.6 2,697,118 - Sama_2232 0.84 +1.4 2,697,128 + Sama_2232 0.85 -2.4 2,697,167 - Sama_2232 0.89 +1.4 2,697,181 + +1.7 2,697,182 - +1.2 2,697,202 + -0.2 2,697,202 + +0.1 2,697,202 + +0.8 2,697,202 + -0.5 2,697,202 + -1.0 2,697,202 + +0.2 2,697,203 - -1.2 2,697,203 - -0.8 2,697,203 - -0.3 2,697,203 - -1.9 2,697,203 - -0.8 2,697,203 - +0.6 2,697,203 - +0.3 2,697,203 - -0.8 2,697,204 + +1.8 2,697,204 + +2.4 2,697,205 - -2.1 2,697,205 - +2.9 2,697,205 - -0.2 2,697,258 - +0.1 2,697,282 + -2.1 2,697,316 - -0.9 2,697,316 - -0.1 2,697,318 + +0.7 2,697,319 - +1.8
Or see this region's nucleotide sequence