Strain Fitness in Shewanella amazonensis SB2B around Sama_2231

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,694,536	+		Sama_2229	0.89	+0.8
2,694,536	+		Sama_2229	0.89	-1.6
2,694,537	-		Sama_2229	0.89	+0.6
2,694,537	-		Sama_2229	0.89	-0.8
2,694,537	-		Sama_2229	0.89	+1.1
2,694,537	-		Sama_2229	0.89	-0.5
2,694,540	-		Sama_2229	0.90	-1.6
2,694,540	-		Sama_2229	0.90	+2.4
2,694,647	+				+1.5
2,694,647	+				-1.4
2,694,647	+				+1.0
2,694,647	+				-0.1
2,694,648	-				+2.0
2,694,648	-				+1.1
2,694,648	-				-0.6
2,694,648	-				+0.2
2,694,648	-				-1.0
2,694,691	+		Sama_2230	0.11	+0.3
2,694,787	-		Sama_2230	0.24	+0.2
2,694,787	-		Sama_2230	0.24	+0.5
2,694,787	-		Sama_2230	0.24	+0.1
2,694,812	-		Sama_2230	0.28	-1.3
2,694,812	-		Sama_2230	0.28	-1.0
2,694,839	-		Sama_2230	0.31	-0.1
2,694,839	-		Sama_2230	0.31	+2.1
2,694,887	-		Sama_2230	0.38	+0.0
2,694,956	+		Sama_2230	0.47	+1.8
2,694,956	+		Sama_2230	0.47	-1.9
2,694,956	+		Sama_2230	0.47	-0.2
2,694,956	+		Sama_2230	0.47	+0.5
2,694,956	+		Sama_2230	0.47	-1.2
2,694,957	-		Sama_2230	0.47	+0.9
2,694,957	-		Sama_2230	0.47	-1.6
2,694,957	-		Sama_2230	0.47	-0.8
2,695,060	+		Sama_2230	0.61	-0.5
2,695,061	-		Sama_2230	0.62	-0.4
2,695,111	+		Sama_2230	0.68	+0.3
2,695,149	-		Sama_2230	0.73	+0.0
2,695,171	+		Sama_2230	0.76	+1.0
2,695,222	+		Sama_2230	0.83	-0.9
2,695,222	+		Sama_2230	0.83	-1.6
2,695,223	-		Sama_2230	0.83	+0.2
2,695,320	-				+0.5
2,695,349	-				-1.2
2,695,360	+				+0.4
2,695,383	-				+2.7
2,695,537	-				-1.2
2,695,537	-				+0.0
2,695,547	+				-0.4
2,695,548	-				+0.5
2,695,548	-				-1.4
2,695,581	+		Sama_2231	0.11	+0.2
2,695,581	+		Sama_2231	0.11	-1.4
2,695,581	+		Sama_2231	0.11	-1.0
2,695,582	-		Sama_2231	0.11	-1.5
2,695,582	-		Sama_2231	0.11	-3.0
2,695,582	-		Sama_2231	0.11	-0.6
2,695,582	-		Sama_2231	0.11	-0.8
2,695,582	-		Sama_2231	0.11	+1.2
2,695,582	-		Sama_2231	0.11	+1.3
2,695,611	+		Sama_2231	0.14	+1.3
2,695,611	+		Sama_2231	0.14	-1.0
2,695,612	-		Sama_2231	0.14	-2.4
2,695,612	-		Sama_2231	0.14	+0.8
2,695,612	-		Sama_2231	0.14	+2.0
2,695,612	-		Sama_2231	0.14	-0.2
2,695,612	-		Sama_2231	0.14	-0.8
2,695,634	-		Sama_2231	0.17	+0.2
2,695,634	-		Sama_2231	0.17	-1.8
2,695,634	-		Sama_2231	0.17	-0.5
2,695,634	-		Sama_2231	0.17	-2.3
2,695,670	-		Sama_2231	0.21	+0.6
2,695,670	-		Sama_2231	0.21	-2.5
2,695,670	-		Sama_2231	0.21	-0.5
2,695,670	-		Sama_2231	0.21	-1.8
2,695,721	+		Sama_2231	0.26	+1.0
2,695,751	+		Sama_2231	0.30	-1.2
2,695,752	-		Sama_2231	0.30	-1.2
2,695,752	-		Sama_2231	0.30	-1.9
2,696,039	+		Sama_2231	0.62	+1.8
2,696,040	-		Sama_2231	0.62	-1.0
2,696,100	-		Sama_2231	0.68	-1.2
2,696,100	-		Sama_2231	0.68	-2.0
2,696,134	+		Sama_2231	0.72	+0.6
2,696,134	+		Sama_2231	0.72	-0.4
2,696,170	+		Sama_2231	0.76	+0.8
2,696,171	-		Sama_2231	0.76	-0.8
2,696,171	-		Sama_2231	0.76	-0.6
2,696,171	-		Sama_2231	0.76	-2.0
2,696,173	-		Sama_2231	0.77	-1.4
2,696,278	-		Sama_2231	0.88	+2.3
2,696,296	+				-0.2
2,696,297	-				+1.3
2,696,297	-				+3.0
2,696,297	-				-2.0
2,696,297	-				+2.1
2,696,303	-				+0.2
2,696,413	-				+0.5
2,696,413	-				-0.5
2,696,503	-		Sama_2232	0.11	+1.8
2,696,808	+		Sama_2232	0.47	-1.4
2,696,809	-		Sama_2232	0.47	+1.2
2,696,809	-		Sama_2232	0.47	-2.4
2,696,816	-		Sama_2232	0.48	-0.6
2,696,978	-		Sama_2232	0.67	+2.8
2,697,043	+		Sama_2232	0.75	+0.8
2,697,044	-		Sama_2232	0.75	+0.5
2,697,117	+		Sama_2232	0.83	-0.6
2,697,118	-		Sama_2232	0.84	+1.4
2,697,128	+		Sama_2232	0.85	-2.4
2,697,167	-		Sama_2232	0.89	+1.4
2,697,181	+				+1.7
2,697,182	-				+1.2
2,697,202	+				-0.2
2,697,202	+				+0.1
2,697,202	+				+0.8
2,697,202	+				-0.5
2,697,202	+				-1.0
2,697,202	+				+0.2
2,697,203	-				-1.2
2,697,203	-				-0.8
2,697,203	-				-0.3
2,697,203	-				-1.9
2,697,203	-				-0.8
2,697,203	-				+0.6
2,697,203	-				+0.3
2,697,203	-				-0.8
2,697,204	+				+1.8
2,697,204	+				+2.4
2,697,205	-				-2.1
2,697,205	-				+2.9
2,697,205	-				-0.2
2,697,258	-				+0.1
2,697,282	+				-2.1
2,697,316	-				-0.9
2,697,316	-				-0.1
2,697,318	+				+0.7
2,697,319	-				+1.8