Strain Fitness in Shewanella amazonensis SB2B around Sama_2223

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,685,957	-	phhA	Sama_2222	0.19	+1.1
2,686,010	+	phhA	Sama_2222	0.26	-2.0
2,686,010	+	phhA	Sama_2222	0.26	+1.5
2,686,010	+	phhA	Sama_2222	0.26	+0.8
2,686,024	+	phhA	Sama_2222	0.27	-1.3
2,686,025	-	phhA	Sama_2222	0.28	+0.4
2,686,064	-	phhA	Sama_2222	0.32	-0.5
2,686,064	-	phhA	Sama_2222	0.32	-0.5
2,686,067	+	phhA	Sama_2222	0.33	+0.5
2,686,067	+	phhA	Sama_2222	0.33	+0.2
2,686,067	+	phhA	Sama_2222	0.33	-2.2
2,686,068	-	phhA	Sama_2222	0.33	-2.0
2,686,112	+	phhA	Sama_2222	0.39	+1.6
2,686,113	-	phhA	Sama_2222	0.39	+0.6
2,686,135	+	phhA	Sama_2222	0.41	-0.8
2,686,135	+	phhA	Sama_2222	0.41	+1.2
2,686,135	+	phhA	Sama_2222	0.41	+2.6
2,686,136	-	phhA	Sama_2222	0.42	+1.4
2,686,136	-	phhA	Sama_2222	0.42	-0.5
2,686,136	-	phhA	Sama_2222	0.42	-0.7
2,686,136	-	phhA	Sama_2222	0.42	+0.4
2,686,177	+	phhA	Sama_2222	0.47	-0.2
2,686,177	+	phhA	Sama_2222	0.47	+0.8
2,686,178	-	phhA	Sama_2222	0.47	-0.1
2,686,178	-	phhA	Sama_2222	0.47	-0.2
2,686,178	-	phhA	Sama_2222	0.47	-2.0
2,686,264	+	phhA	Sama_2222	0.58	+0.2
2,686,265	-	phhA	Sama_2222	0.58	-1.2
2,686,265	-	phhA	Sama_2222	0.58	-1.0
2,686,290	-	phhA	Sama_2222	0.61	-0.2
2,686,465	+	phhA	Sama_2222	0.83	-0.2
2,686,465	+	phhA	Sama_2222	0.83	-1.3
2,686,466	-	phhA	Sama_2222	0.83	+0.2
2,686,466	-	phhA	Sama_2222	0.83	-0.1
2,686,466	-	phhA	Sama_2222	0.83	+0.7
2,686,510	+	phhA	Sama_2222	0.89	-0.0
2,686,511	-	phhA	Sama_2222	0.89	-0.2
2,686,511	-	phhA	Sama_2222	0.89	+0.2
2,686,554	+				+0.4
2,686,555	-				-1.5
2,686,585	+				+0.4
2,686,585	+				-0.2
2,686,585	+				-2.1
2,686,585	+				-2.1
2,686,585	+				+0.0
2,686,585	+				+1.4
2,686,586	-				+2.4
2,686,586	-				-0.6
2,686,586	-				-2.5
2,686,586	-				+0.5
2,686,586	-				+0.1
2,686,586	-				-1.0
2,686,586	-				+1.6
2,686,586	-				+2.3
2,686,586	-				-1.8
2,686,586	-				-0.9
2,686,592	+				-0.1
2,686,592	+				-1.0
2,686,592	+				+0.6
2,686,634	+				+1.6
2,686,635	-				-0.8
2,686,660	-				+1.2
2,686,675	+				-1.0
2,686,693	+				+0.2
2,686,763	-				-1.5
2,686,875	+				-0.8
2,686,875	+				+2.3
2,686,875	+				-0.8
2,686,890	+				-1.6
2,686,890	+				-0.5
2,686,890	+				-0.8
2,686,890	+				-0.8
2,686,890	+				+0.8
2,686,890	+				-1.4
2,686,890	+				-2.3
2,686,890	+				-0.2
2,686,890	+				+1.9
2,686,891	-				-0.4
2,686,946	+				-1.0
2,687,112	+		Sama_2223	0.17	-1.6
2,687,555	+		Sama_2223	0.66	+0.8
2,687,555	+		Sama_2223	0.66	-2.0
2,687,556	-		Sama_2223	0.66	-0.8
2,687,612	+		Sama_2223	0.72	-3.0
2,687,613	-		Sama_2223	0.72	-1.9
2,687,772	+		Sama_2223	0.90	-2.0
2,687,863	+				-0.5
2,687,863	+				-0.5
2,688,249	+		Sama_2224	0.38	-2.6
2,688,528	+		Sama_2224	0.65	-0.8
2,688,561	+		Sama_2224	0.69	-2.3
2,688,639	+		Sama_2224	0.76	-2.1
2,688,727	+		Sama_2224	0.85	-2.9