Strain Fitness in Shewanella amazonensis SB2B around Sama_2219

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,681,521	-				-0.0
2,681,521	-				-1.0
2,681,535	+				+0.2
2,681,535	+				+0.1
2,681,536	-				+0.8
2,681,564	-				+1.0
2,681,620	-				-1.2
2,681,631	+				+0.4
2,681,632	-				+0.2
2,681,632	-				+0.4
2,681,705	-				-0.5
2,681,729	-				+1.4
2,681,729	-				-0.3
2,681,741	+				-1.0
2,681,742	-				-1.9
2,681,742	-				+0.5
2,681,779	-				-0.2
2,681,797	-				+0.4
2,681,821	-		Sama_2218	0.13	-0.5
2,681,828	+		Sama_2218	0.14	-0.5
2,681,833	-		Sama_2218	0.14	-1.0
2,681,864	+		Sama_2218	0.19	-1.5
2,681,864	+		Sama_2218	0.19	-0.8
2,681,877	+		Sama_2218	0.21	-1.2
2,681,878	-		Sama_2218	0.21	-1.0
2,681,878	-		Sama_2218	0.21	-0.5
2,681,985	-		Sama_2218	0.38	+0.5
2,682,033	-		Sama_2218	0.46	-2.1
2,682,162	-		Sama_2218	0.66	-0.2
2,682,162	-		Sama_2218	0.66	+0.7
2,682,245	-		Sama_2218	0.79	-0.5
2,682,245	-		Sama_2218	0.79	-1.5
2,682,248	+		Sama_2218	0.79	+1.4
2,682,249	-		Sama_2218	0.79	+1.1
2,682,295	+		Sama_2218	0.86	-0.5
2,682,365	+				-1.0
2,682,366	-				-1.5
2,682,372	-				-0.3
2,682,417	+				+0.0
2,682,417	+				-1.0
2,682,418	-				-0.8
2,682,418	-				+1.8
2,682,430	-				-1.8
2,682,430	-				-1.0
2,682,484	-				-1.8
2,682,484	-				-1.3
2,682,484	-				+1.2
2,682,613	+		Sama_2219	0.14	-1.0
2,682,613	+		Sama_2219	0.14	-1.2
2,682,614	-		Sama_2219	0.14	-0.2
2,682,614	-		Sama_2219	0.14	+0.6
2,682,614	-		Sama_2219	0.14	-0.2
2,682,614	-		Sama_2219	0.14	-0.5
2,682,654	+		Sama_2219	0.18	+0.8
2,682,655	-		Sama_2219	0.18	-3.1
2,682,677	+		Sama_2219	0.21	+0.2
2,682,677	+		Sama_2219	0.21	-2.0
2,682,677	+		Sama_2219	0.21	-0.2
2,682,678	-		Sama_2219	0.21	-2.0
2,682,678	-		Sama_2219	0.21	+2.2
2,682,678	-		Sama_2219	0.21	-0.8
2,682,713	+		Sama_2219	0.24	-2.0
2,682,714	-		Sama_2219	0.24	-0.8
2,682,714	-		Sama_2219	0.24	-0.8
2,682,799	+		Sama_2219	0.33	-0.5
2,682,800	-		Sama_2219	0.33	-2.3
2,682,800	-		Sama_2219	0.33	-1.0
2,682,800	-		Sama_2219	0.33	-1.0
2,682,800	-		Sama_2219	0.33	-1.3
2,682,800	-		Sama_2219	0.33	-0.8
2,682,935	-		Sama_2219	0.47	-1.5
2,683,096	+		Sama_2219	0.63	-0.2
2,683,096	+		Sama_2219	0.63	-1.3
2,683,119	+		Sama_2219	0.65	-0.2
2,683,172	-		Sama_2219	0.71	-2.2
2,683,193	+		Sama_2219	0.73	-2.0
2,683,193	+		Sama_2219	0.73	-2.7
2,683,193	+		Sama_2219	0.73	-1.0
2,683,193	+		Sama_2219	0.73	+1.2
2,683,197	+		Sama_2219	0.73	-1.2
2,683,198	-		Sama_2219	0.73	-0.8
2,683,198	-		Sama_2219	0.73	-1.9
2,683,303	-		Sama_2219	0.84	+0.8
2,683,407	-				-2.2
2,683,441	+				-3.2
2,683,441	+				+0.4
2,683,441	+				-1.5
2,683,441	+				+0.2
2,683,442	-				-1.6
2,683,443	+				-1.2
2,683,443	+				-1.0
2,683,444	-				-2.6
2,683,444	-				-1.6
2,683,444	-				-1.5
2,683,444	-				+0.2
2,683,518	-				-2.3
2,683,518	-				+0.3
2,683,524	+				-0.8
2,683,525	-				-0.2
2,683,525	-				+1.2
2,683,581	-				+0.1
2,683,581	-				+2.6
2,683,581	-				+0.5
2,683,584	+				-0.6
2,683,585	-				+0.8
2,683,690	-				+3.0
2,683,690	-				-0.2
2,683,709	+				-0.1
2,683,710	-				+1.9
2,683,710	-				+0.2
2,683,710	-				-1.5
2,683,710	-				-3.0
2,683,713	+				-0.3
2,683,713	+				-1.5
2,683,713	+				-1.9
2,683,713	+				-0.3
2,683,714	-				-1.8
2,683,714	-				-0.4
2,683,714	-				-0.9
2,683,714	-				+1.3
2,683,714	-				+1.8
2,683,714	-				-1.3
2,683,714	-				+0.7
2,683,714	-				-0.1
2,683,714	-				+0.1
2,683,714	-				-0.3
2,683,719	-				-0.5
2,683,719	-				+1.2
2,683,719	-				+0.4
2,683,720	+				+0.8
2,683,721	-				+0.5
2,683,721	-				+0.6
2,683,756	-				+1.1
2,683,756	-				-1.2
2,683,756	-				-1.3
2,683,756	-				-0.5
2,683,756	-				-2.8
2,683,761	+				-1.0
2,683,762	-				-2.1
2,683,762	-				-0.3
2,683,762	-				+2.1
2,683,793	-				+1.0
2,683,801	+				-1.2
2,683,801	+				+1.7
2,683,947	-		Sama_2220	0.16	-0.8
2,683,947	-		Sama_2220	0.16	+2.1
2,683,947	-		Sama_2220	0.16	+1.6
2,683,947	-		Sama_2220	0.16	+0.6
2,684,002	+		Sama_2220	0.20	-2.0
2,684,002	+		Sama_2220	0.20	-3.3
2,684,003	-		Sama_2220	0.20	-0.3
2,684,007	-		Sama_2220	0.20	-1.8
2,684,007	-		Sama_2220	0.20	-2.0
2,684,007	-		Sama_2220	0.20	-0.8
2,684,007	-		Sama_2220	0.20	+2.9
2,684,068	+		Sama_2220	0.24	-1.6
2,684,068	+		Sama_2220	0.24	-0.2
2,684,068	+		Sama_2220	0.24	-0.8
2,684,069	-		Sama_2220	0.24	+2.2
2,684,069	-		Sama_2220	0.24	+0.8
2,684,069	-		Sama_2220	0.24	+1.6
2,684,069	-		Sama_2220	0.24	+1.0
2,684,069	-		Sama_2220	0.24	+0.8
2,684,099	+		Sama_2220	0.26	-1.1
2,684,111	+		Sama_2220	0.27	-1.0
2,684,112	-		Sama_2220	0.27	-1.0
2,684,112	-		Sama_2220	0.27	-1.2
2,684,112	-		Sama_2220	0.27	-0.8
2,684,112	-		Sama_2220	0.27	+2.1
2,684,154	-		Sama_2220	0.30	+2.9
2,684,158	+		Sama_2220	0.30	-0.5
2,684,162	-		Sama_2220	0.30	+0.6
2,684,162	-		Sama_2220	0.30	-1.0
2,684,347	-		Sama_2220	0.42	-1.2