Strain Fitness in Shewanella amazonensis SB2B around Sama_2194

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,651,670	-	tgt	Sama_2193	0.29	+0.6
2,651,742	+	tgt	Sama_2193	0.36	+1.8
2,651,839	-	tgt	Sama_2193	0.44	-0.8
2,651,895	+	tgt	Sama_2193	0.49	+0.5
2,651,896	-	tgt	Sama_2193	0.49	-1.8
2,651,896	-	tgt	Sama_2193	0.49	+0.4
2,652,053	+	tgt	Sama_2193	0.63	-0.6
2,652,183	-	tgt	Sama_2193	0.75	-0.6
2,652,364	-				-0.5
2,652,368	-				+0.2
2,652,446	-				+1.0
2,652,448	+				-0.8
2,652,634	-				+1.2
2,652,696	-				+0.2
2,652,706	+				-1.5
2,652,707	-				-1.0
2,652,707	-				+0.2
2,652,791	-	queA	Sama_2194	0.17	-2.4
2,652,817	-	queA	Sama_2194	0.19	-2.7
2,652,817	-	queA	Sama_2194	0.19	-0.1
2,652,822	+	queA	Sama_2194	0.20	+0.3
2,652,823	-	queA	Sama_2194	0.20	-1.5
2,652,968	-	queA	Sama_2194	0.34	+0.5
2,653,012	+	queA	Sama_2194	0.38	+0.2
2,653,126	-	queA	Sama_2194	0.49	-1.6
2,653,157	+	queA	Sama_2194	0.52	-0.5
2,653,157	+	queA	Sama_2194	0.52	+0.2
2,653,157	+	queA	Sama_2194	0.52	-1.0
2,653,158	-	queA	Sama_2194	0.52	-1.4
2,653,158	-	queA	Sama_2194	0.52	-2.0
2,653,206	+	queA	Sama_2194	0.57	-0.4
2,653,207	-	queA	Sama_2194	0.57	-0.3
2,653,208	+	queA	Sama_2194	0.57	-1.0
2,653,209	-	queA	Sama_2194	0.57	-1.9
2,653,224	+	queA	Sama_2194	0.58	+0.8
2,653,260	+	queA	Sama_2194	0.62	+0.2
2,653,260	+	queA	Sama_2194	0.62	-1.2
2,653,261	-	queA	Sama_2194	0.62	-2.0
2,653,261	-	queA	Sama_2194	0.62	+0.1
2,653,404	+	queA	Sama_2194	0.76	-1.2
2,653,405	-	queA	Sama_2194	0.76	-1.5
2,653,405	-	queA	Sama_2194	0.76	-0.2
2,653,405	-	queA	Sama_2194	0.76	-0.1
2,653,405	-	queA	Sama_2194	0.76	+0.1
2,653,406	-	queA	Sama_2194	0.76	+0.9
2,653,479	+	queA	Sama_2194	0.83	-1.0
2,653,638	+				-0.8
2,653,638	+				+0.7
2,653,639	-				-1.2
2,653,639	-				+1.2
2,653,639	-				+0.2
2,653,648	+				-1.8
2,653,649	-				+0.4
2,653,658	+				+1.1
2,653,658	+				+0.8
2,653,658	+				+0.6
2,653,658	+				-0.2
2,653,658	+				-2.4
2,653,658	+				-0.2
2,653,658	+				-0.8
2,653,659	-				-1.0
2,653,659	-				+2.1
2,653,659	-				-1.6
2,653,660	+				-1.5
2,653,661	-				+0.8
2,653,661	-				-1.0
2,653,661	-				-0.2
2,653,661	-				+0.0
2,653,661	-				+0.8
2,653,661	-				+0.1
2,653,693	+				-1.4
2,653,742	+				+0.2
2,653,742	+				-0.1
2,653,743	-				-0.9
2,653,743	-				+1.0
2,653,743	-				-1.6
2,653,754	+				-1.9
2,653,755	-				-0.5
2,653,769	+				-1.2
2,653,769	+				-1.0
2,653,839	+				+0.8
2,653,839	+				+1.8
2,653,891	+				+0.2
2,653,891	+				+0.5
2,653,891	+				-1.8
2,653,891	+				-1.0
2,653,909	+				+3.4
2,653,909	+				+0.8
2,653,909	+				-1.0
2,653,909	+				+0.7
2,653,909	+				-0.8
2,653,927	+				-0.2
2,653,945	+				+1.4
2,653,945	+				+0.4
2,653,945	+				+0.1
2,654,003	-				+0.1
2,654,003	-				-0.9
2,654,037	+				-0.5
2,654,037	+				+0.5
2,654,038	-				+0.2
2,654,072	+				+1.3
2,654,072	+				-0.8
2,654,073	-				-0.5
2,654,076	-				-0.2
2,654,107	+				-1.2
2,654,107	+				-1.0
2,654,108	-				-1.3
2,654,141	+				-2.0
2,654,174	+				-1.0
2,654,175	-				-0.3
2,654,344	+		Sama_2195	0.34	-0.6
2,654,345	-		Sama_2195	0.34	-1.5
2,654,345	-		Sama_2195	0.34	+0.2
2,654,362	+		Sama_2195	0.37	-0.8
2,654,363	-		Sama_2195	0.37	-0.5
2,654,363	-		Sama_2195	0.37	+3.8
2,654,375	-		Sama_2195	0.39	+1.8
2,654,412	+		Sama_2195	0.45	+0.2
2,654,413	-		Sama_2195	0.46	+1.8
2,654,413	-		Sama_2195	0.46	+0.4
2,654,432	+		Sama_2195	0.49	-0.2
2,654,433	-		Sama_2195	0.49	+2.4
2,654,451	+		Sama_2195	0.52	-2.5
2,654,466	-		Sama_2195	0.55	+0.2
2,654,466	-		Sama_2195	0.55	+2.1
2,654,538	+		Sama_2195	0.67	-2.0
2,654,538	+		Sama_2195	0.67	+1.4
2,654,538	+		Sama_2195	0.67	+0.2