Strain Fitness in Shewanella amazonensis SB2B around Sama_2149

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,594,338	-		Sama_2147	0.57	-0.8
2,594,349	-		Sama_2147	0.59	+0.1
2,594,349	-		Sama_2147	0.59	-0.3
2,594,417	-		Sama_2147	0.73	-0.5
2,594,499	-		Sama_2147	0.90	+0.5
2,594,534	-				+0.3
2,596,610	-				-1.1
2,596,634	-				-1.1
2,596,634	-				+0.7
2,596,671	+				-0.6
2,596,672	-				-1.3
2,596,672	-				+1.7
2,596,675	+				-2.0
2,596,903	+	truA	Sama_2150	0.24	-1.5
2,596,903	+	truA	Sama_2150	0.24	-2.0
2,596,904	-	truA	Sama_2150	0.24	-2.0
2,596,920	+	truA	Sama_2150	0.26	-0.6
2,596,920	+	truA	Sama_2150	0.26	-1.3
2,596,920	+	truA	Sama_2150	0.26	-2.3
2,596,920	+	truA	Sama_2150	0.26	+0.1
2,596,921	-	truA	Sama_2150	0.26	-2.8
2,596,921	-	truA	Sama_2150	0.26	-1.8
2,596,960	-	truA	Sama_2150	0.31	-1.9
2,596,960	-	truA	Sama_2150	0.31	-2.0
2,596,960	-	truA	Sama_2150	0.31	-1.0
2,596,960	-	truA	Sama_2150	0.31	-1.1
2,596,961	+	truA	Sama_2150	0.31	-2.1
2,596,961	+	truA	Sama_2150	0.31	-1.2
2,596,961	+	truA	Sama_2150	0.31	-1.6
2,596,961	+	truA	Sama_2150	0.31	-1.8
2,596,961	+	truA	Sama_2150	0.31	-2.8
2,596,961	+	truA	Sama_2150	0.31	-0.3
2,596,961	+	truA	Sama_2150	0.31	-1.9
2,596,961	+	truA	Sama_2150	0.31	+0.1
2,596,961	+	truA	Sama_2150	0.31	+0.7
2,596,961	+	truA	Sama_2150	0.31	-1.5
2,596,961	+	truA	Sama_2150	0.31	-0.6
2,596,962	-	truA	Sama_2150	0.32	-1.6
2,596,962	-	truA	Sama_2150	0.32	-1.1
2,596,962	-	truA	Sama_2150	0.32	+0.1
2,596,962	-	truA	Sama_2150	0.32	-1.6
2,596,962	-	truA	Sama_2150	0.32	-1.8
2,596,962	-	truA	Sama_2150	0.32	-0.6
2,596,962	-	truA	Sama_2150	0.32	-1.4
2,596,962	-	truA	Sama_2150	0.32	-1.5
2,596,962	-	truA	Sama_2150	0.32	-1.5
2,596,989	+	truA	Sama_2150	0.35	-1.8
2,596,990	-	truA	Sama_2150	0.35	-1.3
2,596,990	-	truA	Sama_2150	0.35	-0.6
2,596,990	-	truA	Sama_2150	0.35	-2.6
2,596,990	-	truA	Sama_2150	0.35	-1.9
2,596,990	-	truA	Sama_2150	0.35	-1.6
2,596,990	-	truA	Sama_2150	0.35	+1.7
2,596,990	-	truA	Sama_2150	0.35	-2.8
2,596,990	-	truA	Sama_2150	0.35	-0.5
2,596,993	+	truA	Sama_2150	0.35	+0.7
2,596,994	-	truA	Sama_2150	0.36	-1.3
2,596,994	-	truA	Sama_2150	0.36	-1.1
2,596,994	-	truA	Sama_2150	0.36	+0.7
2,597,010	+	truA	Sama_2150	0.38	-1.3
2,597,060	-	truA	Sama_2150	0.44	-2.6
2,597,060	-	truA	Sama_2150	0.44	-1.9
2,597,060	-	truA	Sama_2150	0.44	-0.3
2,597,111	+	truA	Sama_2150	0.51	+0.1
2,597,163	+	truA	Sama_2150	0.57	-1.4
2,597,164	-	truA	Sama_2150	0.57	+0.1
2,597,307	+	truA	Sama_2150	0.75	-1.3
2,597,339	-	truA	Sama_2150	0.80	-0.9
2,597,503	+				-1.9
2,597,504	-				-1.3
2,597,541	+				-1.6
2,597,542	-				-0.5
2,597,544	+				-1.3
2,597,545	-				-0.9
2,597,545	-				-1.5
2,597,599	-				-0.2