Strain Fitness in Shewanella amazonensis SB2B around Sama_2143

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,587,086	+				-0.7
2,587,099	-				-1.4
2,587,100	+				+0.1
2,587,100	+				+1.9
2,587,101	-				-0.0
2,587,175	+				-1.7
2,587,213	+				+0.6
2,587,309	+		Sama_2142	0.12	+0.2
2,587,310	-		Sama_2142	0.13	+1.3
2,587,324	+		Sama_2142	0.15	-0.8
2,587,345	+		Sama_2142	0.18	-1.1
2,587,346	-		Sama_2142	0.18	+2.0
2,587,346	-		Sama_2142	0.18	+0.1
2,587,346	-		Sama_2142	0.18	-0.7
2,587,506	+		Sama_2142	0.43	-1.2
2,587,509	-		Sama_2142	0.43	+1.2
2,587,509	-		Sama_2142	0.43	-2.7
2,587,509	-		Sama_2142	0.43	-0.5
2,587,509	-		Sama_2142	0.43	+0.3
2,587,509	-		Sama_2142	0.43	-1.7
2,587,545	+		Sama_2142	0.49	+1.2
2,587,697	+		Sama_2142	0.73	+0.4
2,587,697	+		Sama_2142	0.73	-0.6
2,587,697	+		Sama_2142	0.73	-2.1
2,587,698	-		Sama_2142	0.73	-0.2
2,587,698	-		Sama_2142	0.73	+1.1
2,587,698	-		Sama_2142	0.73	+0.6
2,587,698	-		Sama_2142	0.73	+0.1
2,587,698	-		Sama_2142	0.73	+0.2
2,587,698	-		Sama_2142	0.73	-1.5
2,587,758	+		Sama_2142	0.82	-0.9
2,587,762	+		Sama_2142	0.83	+1.2
2,587,859	+				+1.2
2,587,860	-				-1.6
2,587,866	+				-0.2
2,587,873	+				+0.1
2,587,892	-				-0.3
2,587,994	-				-1.2
2,588,005	+				-1.2
2,588,008	-				+0.2
2,588,008	-				-2.9
2,588,127	-				-0.4
2,588,168	+				+2.0
2,588,191	+		Sama_2143	0.11	+0.6
2,588,192	-		Sama_2143	0.11	+0.2
2,588,192	-		Sama_2143	0.11	+0.1
2,588,435	+		Sama_2143	0.29	+2.5
2,588,435	+		Sama_2143	0.29	+1.4
2,588,436	-		Sama_2143	0.30	+3.4
2,588,436	-		Sama_2143	0.30	+1.9
2,588,436	-		Sama_2143	0.30	+0.4
2,588,521	+		Sama_2143	0.36	-1.3
2,588,521	+		Sama_2143	0.36	+0.1
2,588,521	+		Sama_2143	0.36	-1.3
2,588,529	+		Sama_2143	0.37	-2.3
2,588,530	-		Sama_2143	0.37	-0.3
2,588,568	-		Sama_2143	0.40	+1.1
2,588,625	+		Sama_2143	0.44	-0.3
2,588,625	+		Sama_2143	0.44	-2.5
2,588,625	+		Sama_2143	0.44	+1.6
2,588,626	-		Sama_2143	0.44	-1.6
2,588,626	-		Sama_2143	0.44	+1.5
2,588,728	+		Sama_2143	0.52	-1.1
2,588,728	+		Sama_2143	0.52	+1.1
2,588,729	-		Sama_2143	0.52	+1.4
2,588,729	-		Sama_2143	0.52	-2.0
2,588,729	-		Sama_2143	0.52	-1.5
2,588,729	-		Sama_2143	0.52	+0.7
2,588,729	-		Sama_2143	0.52	+0.3
2,588,729	-		Sama_2143	0.52	+0.2
2,588,729	-		Sama_2143	0.52	-1.8
2,588,731	+		Sama_2143	0.52	-1.2
2,588,731	+		Sama_2143	0.52	+0.5
2,588,779	+		Sama_2143	0.56	+1.1
2,588,780	-		Sama_2143	0.56	+1.0
2,588,780	-		Sama_2143	0.56	+0.7
2,588,815	-		Sama_2143	0.58	-1.1
2,588,815	-		Sama_2143	0.58	-1.1
2,588,817	+		Sama_2143	0.58	-1.3
2,588,818	-		Sama_2143	0.58	+1.4
2,588,904	+		Sama_2143	0.65	-1.3
2,588,905	-		Sama_2143	0.65	+0.2
2,588,905	-		Sama_2143	0.65	+0.1
2,588,905	-		Sama_2143	0.65	-0.2
2,588,947	-		Sama_2143	0.68	+0.2
2,589,170	+		Sama_2143	0.85	+1.4
2,589,192	-		Sama_2143	0.87	-0.1
2,589,195	+		Sama_2143	0.87	+1.8
2,589,206	+		Sama_2143	0.88	+2.8
2,589,206	+		Sama_2143	0.88	+2.8
2,589,206	+		Sama_2143	0.88	-0.3
2,589,206	+		Sama_2143	0.88	+0.7
2,589,206	+		Sama_2143	0.88	+0.1
2,589,207	-		Sama_2143	0.88	-1.5
2,589,207	-		Sama_2143	0.88	+2.4
2,589,207	-		Sama_2143	0.88	-0.9
2,589,207	-		Sama_2143	0.88	-1.1
2,589,264	+				-1.3
2,589,264	+				+0.5
2,589,282	+				-0.9
2,589,282	+				-0.9
2,589,283	-				-1.6
2,589,290	+				+0.7
2,589,290	+				+0.2
2,589,291	-				-2.0
2,589,291	-				-1.7
2,589,302	+				-1.3
2,589,302	+				-2.1
2,589,303	-				+0.4
2,589,303	-				+2.3
2,589,303	-				+0.3
2,589,364	-				+2.1
2,589,371	-				-1.1
2,589,388	+				-2.0
2,589,399	+				+2.7
2,589,421	+				-0.4
2,589,421	+				-0.3
2,589,421	+				-1.1
2,589,421	+				+1.7
2,589,421	+				-0.4
2,589,422	-				+0.7
2,589,422	-				-2.1
2,589,422	-				-1.1
2,589,422	-				+1.1
2,589,423	+				+2.1
2,589,423	+				-0.9
2,589,423	+				-2.3
2,589,423	+				+0.9
2,589,423	+				+0.5
2,589,423	+				-1.5
2,589,423	+				+1.3
2,589,423	+				-1.1
2,589,423	+				-1.8
2,589,423	+				-1.4
2,589,423	+				+1.7
2,589,424	-				+1.7
2,589,424	-				-0.5
2,589,424	-				+2.7
2,589,424	-				-1.5
2,589,424	-				-0.9
2,589,424	-				-2.6
2,589,424	-				+0.4
2,589,436	+				+1.9
2,589,437	-				+1.8
2,589,437	-				+0.5
2,589,503	-				+0.7
2,589,503	-				-1.8
2,589,503	-				-1.1
2,589,530	+				-1.5
2,589,531	-				-2.4
2,589,531	-				-0.1
2,589,531	-				-0.3
2,589,533	+				+0.1
2,589,542	-				-2.6
2,589,580	+		Sama_2144	0.13	+0.8
2,589,580	+		Sama_2144	0.13	-0.8
2,589,581	-		Sama_2144	0.14	-2.1
2,589,581	-		Sama_2144	0.14	+0.5
2,589,604	+		Sama_2144	0.26	-1.9
2,589,604	+		Sama_2144	0.26	+1.3
2,589,604	+		Sama_2144	0.26	+1.1
2,589,605	-		Sama_2144	0.26	-0.4
2,589,653	-		Sama_2144	0.52	-1.4
2,589,653	-		Sama_2144	0.52	+0.6
2,589,653	-		Sama_2144	0.52	+1.6
2,589,730	-				-0.0
2,589,774	-				+0.5
2,589,774	-				+2.1
2,589,797	+				+2.1
2,589,797	+				+0.1
2,589,798	-				+0.5
2,589,844	-				-1.9
2,589,860	+				+0.9
2,589,860	+				-0.6
2,589,861	-				+1.4
2,589,865	+				-2.8
2,589,865	+				-0.0
2,589,866	-				+0.5
2,589,894	+				-0.5
2,589,894	+				+0.5
2,589,894	+				+0.2
2,589,895	-				+1.7
2,589,972	+				+0.5
2,589,973	-				-1.3
2,589,973	-				+0.9
2,590,182	+				+1.0
2,590,182	+				-2.3
2,590,182	+				+0.1
2,590,183	-				-0.5
2,590,193	+		Sama_2145	0.10	+0.8
2,590,194	-		Sama_2145	0.10	+1.7
2,590,215	+		Sama_2145	0.11	-0.4
2,590,216	-		Sama_2145	0.11	-2.6
2,590,249	-		Sama_2145	0.13	-1.5
2,590,285	+		Sama_2145	0.15	-2.0
2,590,286	-		Sama_2145	0.15	-1.3
2,590,320	+		Sama_2145	0.16	-0.6
2,590,347	+		Sama_2145	0.18	-0.6
2,590,347	+		Sama_2145	0.18	-2.3