Strain Fitness in Shewanella amazonensis SB2B around Sama_2092

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,535,411	+		Sama_2091	0.82	-1.4
2,535,412	-		Sama_2091	0.82	-0.1
2,535,452	-		Sama_2091	0.84	-0.7
2,535,452	-		Sama_2091	0.84	+0.0
2,535,535	+		Sama_2091	0.88	-2.4
2,535,555	+		Sama_2091	0.89	+1.6
2,535,555	+		Sama_2091	0.89	-1.5
2,535,556	-		Sama_2091	0.89	-0.7
2,535,556	-		Sama_2091	0.89	+0.8
2,535,665	+				-2.3
2,535,780	-				-2.0
2,535,780	-				+0.2
2,535,847	+				-1.4
2,535,848	-				-1.7
2,535,848	-				-1.2
2,535,848	-				-0.6
2,535,848	-				-2.7
2,535,848	-				+0.3
2,535,937	-				-1.5
2,535,937	-				-0.8
2,536,095	+				+1.0
2,536,194	+				+2.4
2,536,194	+				+0.6
2,536,235	+				-0.4
2,536,329	+				+1.8
2,536,330	-				+0.2
2,536,330	-				-0.6
2,536,332	-				-1.0
2,536,355	+				-1.0
2,536,479	-		Sama_2092	0.15	-2.5
2,536,479	-		Sama_2092	0.15	-2.5
2,536,562	-		Sama_2092	0.24	-2.9
2,536,562	-		Sama_2092	0.24	-3.1
2,536,571	+		Sama_2092	0.25	-2.1
2,536,577	+		Sama_2092	0.26	-3.5
2,536,606	+		Sama_2092	0.29	-4.0
2,536,607	-		Sama_2092	0.30	-1.8
2,536,607	-		Sama_2092	0.30	-2.8
2,536,706	-		Sama_2092	0.41	-1.4
2,536,745	-		Sama_2092	0.45	-2.3
2,536,745	-		Sama_2092	0.45	-2.5
2,536,745	-		Sama_2092	0.45	-2.1
2,536,787	+		Sama_2092	0.50	-2.1
2,536,787	+		Sama_2092	0.50	-3.9
2,536,787	+		Sama_2092	0.50	-2.7
2,536,787	+		Sama_2092	0.50	-3.5
2,536,788	-		Sama_2092	0.50	-2.0
2,536,801	+		Sama_2092	0.52	-2.4
2,536,816	+		Sama_2092	0.54	-2.6
2,536,816	+		Sama_2092	0.54	-1.4
2,536,816	+		Sama_2092	0.54	-1.4
2,536,817	-		Sama_2092	0.54	-1.8
2,536,817	-		Sama_2092	0.54	-0.7
2,536,823	+		Sama_2092	0.54	-1.7
2,536,824	-		Sama_2092	0.54	-2.0
2,536,824	-		Sama_2092	0.54	-2.9
2,536,879	-		Sama_2092	0.61	-4.0
2,536,901	+		Sama_2092	0.63	-2.2
2,536,901	+		Sama_2092	0.63	-1.0
2,536,901	+		Sama_2092	0.63	-1.4
2,536,901	+		Sama_2092	0.63	-1.5
2,536,901	+		Sama_2092	0.63	+0.0
2,536,902	-		Sama_2092	0.63	-1.0
2,536,902	-		Sama_2092	0.63	-1.8
2,536,902	-		Sama_2092	0.63	-1.8
2,536,903	+		Sama_2092	0.64	-1.8
2,536,903	+		Sama_2092	0.64	-1.8
2,536,903	+		Sama_2092	0.64	-3.3
2,536,903	+		Sama_2092	0.64	-2.1
2,536,903	+		Sama_2092	0.64	-1.2
2,536,903	+		Sama_2092	0.64	-1.0
2,536,903	+		Sama_2092	0.64	-2.5
2,536,903	+		Sama_2092	0.64	-2.8
2,536,904	-		Sama_2092	0.64	-2.6
2,536,904	-		Sama_2092	0.64	-3.1
2,536,904	-		Sama_2092	0.64	-1.4
2,536,904	-		Sama_2092	0.64	-1.2
2,536,904	-		Sama_2092	0.64	-3.3
2,536,904	-		Sama_2092	0.64	-3.7
2,536,904	-		Sama_2092	0.64	-2.5
2,537,003	+		Sama_2092	0.75	-4.1
2,537,004	-		Sama_2092	0.75	-3.1
2,537,004	-		Sama_2092	0.75	-3.3
2,537,020	-		Sama_2092	0.77	-1.5
2,537,020	-		Sama_2092	0.77	-2.4
2,537,020	-		Sama_2092	0.77	-2.8
2,537,100	-		Sama_2092	0.86	+0.0
2,537,150	-				-2.1
2,537,150	-				+1.6
2,537,196	+				-2.5
2,537,197	-				-2.8
2,537,201	+				+1.6
2,537,201	+				-0.7
2,537,202	-				-3.5
2,537,211	-				-1.1
2,537,220	-				-2.3
2,537,220	-				-1.8
2,537,220	-				-2.1
2,537,220	-				-0.8
2,537,243	+				-3.6
2,537,244	-				-1.5
2,537,254	+				-1.2
2,537,255	-				-0.2
2,537,255	-				+1.2
2,537,265	-				+0.7
2,537,265	-				-2.4
2,537,324	-				-1.1
2,537,324	-				-1.7
2,537,328	+				-0.9
2,537,328	+				-0.7
2,537,328	+				+0.7
2,537,328	+				-1.4
2,537,331	+				-0.5
2,537,611	+		Sama_2093	0.40	-2.2
2,537,712	+		Sama_2093	0.53	-0.4
2,537,948	+		Sama_2093	0.83	-1.4
2,538,022	+				-2.7
2,538,064	+				-0.9
2,538,105	+				+0.2
2,538,106	-				+2.2
2,538,130	+				-0.4