Strain Fitness in Shewanella amazonensis SB2B around Sama_2089

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,532,432	-				-2.2
2,533,176	-		Sama_2090	0.22	+0.3
2,533,176	-		Sama_2090	0.22	-1.3
2,533,176	-		Sama_2090	0.22	-0.3
2,533,176	-		Sama_2090	0.22	+0.5
2,533,176	-		Sama_2090	0.22	-2.4
2,533,176	-		Sama_2090	0.22	+1.6
2,533,254	-		Sama_2090	0.41	+0.1
2,533,254	-		Sama_2090	0.41	+0.9
2,533,432	-		Sama_2090	0.86	+2.7
2,533,432	-		Sama_2090	0.86	-1.5
2,533,434	-		Sama_2090	0.86	+0.5
2,533,434	-		Sama_2090	0.86	-0.4
2,533,434	-		Sama_2090	0.86	+2.9
2,533,434	-		Sama_2090	0.86	+1.4
2,533,454	-				-0.1
2,533,462	-				+0.9
2,533,462	-				+0.9
2,533,465	-				-1.4
2,533,465	-				-0.6
2,533,528	-				+1.4
2,533,528	-				+0.4
2,533,531	-				+0.5
2,533,531	-				+1.3
2,533,531	-				-1.6
2,533,531	-				-0.2
2,533,531	-				+0.2
2,533,531	-				-1.4
2,533,533	-				-0.4
2,533,533	-				+0.6
2,533,533	-				+0.4
2,533,533	-				-3.0
2,533,533	-				+2.1
2,533,533	-				+3.5
2,533,537	-				-2.3
2,533,588	+				-1.7
2,533,595	+				-1.5
2,533,595	+				-0.7
2,533,617	+				-1.5
2,533,617	+				+0.8
2,533,617	+				+0.4
2,533,618	-				+1.7
2,533,618	-				+1.3
2,533,618	-				-0.7
2,533,667	+				+4.4
2,533,695	+				+0.2
2,533,695	+				-1.7
2,533,695	+				-1.2
2,533,695	+				+0.0
2,533,696	-				-1.5
2,533,696	-				-1.0
2,533,696	-				-0.4
2,533,696	-				-3.2
2,533,828	+				-1.2
2,533,828	+				+0.9
2,533,828	+				-2.2
2,533,828	+				+1.1
2,533,829	-				+1.1
2,533,829	-				+0.7
2,533,829	-				-1.1
2,533,829	-				+0.6
2,533,838	+				+0.0
2,533,841	+				-1.2
2,533,884	+		Sama_2091	0.11	-2.5
2,533,885	-		Sama_2091	0.11	-0.7
2,533,929	+		Sama_2091	0.13	-2.5
2,533,963	-		Sama_2091	0.15	+1.6
2,533,985	+		Sama_2091	0.16	+0.8
2,533,985	+		Sama_2091	0.16	+0.0
2,533,986	-		Sama_2091	0.16	+1.1
2,533,986	-		Sama_2091	0.16	+0.1
2,533,986	-		Sama_2091	0.16	-0.1
2,534,011	+		Sama_2091	0.17	+1.1
2,534,011	+		Sama_2091	0.17	-0.4
2,534,012	-		Sama_2091	0.17	-0.4
2,534,018	+		Sama_2091	0.17	-1.2
2,534,019	-		Sama_2091	0.17	-1.0
2,534,066	+		Sama_2091	0.19	+0.0
2,534,095	+		Sama_2091	0.21	-2.0