Strain Fitness in Shewanella amazonensis SB2B around Sama_2069

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,503,928	+		Sama_2067	0.81	+0.2
2,503,932	+		Sama_2067	0.82	+2.7
2,503,932	+		Sama_2067	0.82	+1.8
2,503,932	+		Sama_2067	0.82	+1.2
2,503,933	-		Sama_2067	0.82	-2.5
2,503,933	-		Sama_2067	0.82	-1.2
2,503,933	-		Sama_2067	0.82	+2.0
2,503,936	+		Sama_2067	0.82	+1.8
2,503,937	-		Sama_2067	0.82	-1.7
2,503,937	-		Sama_2067	0.82	-1.5
2,503,948	+		Sama_2067	0.83	+1.4
2,504,120	+				-1.2
2,504,120	+				-3.2
2,504,120	+				-2.5
2,504,120	+				-2.5
2,504,221	+				-0.8
2,504,304	+				+0.6
2,504,350	+				-1.0
2,504,414	-		Sama_2068	0.23	+0.0
2,504,439	+		Sama_2068	0.30	+0.8
2,504,510	+		Sama_2068	0.50	-0.4
2,504,514	+		Sama_2068	0.51	-1.2
2,504,514	+		Sama_2068	0.51	+0.5
2,504,514	+		Sama_2068	0.51	-1.0
2,504,547	+		Sama_2068	0.61	-1.2
2,504,547	+		Sama_2068	0.61	+0.5
2,504,553	+		Sama_2068	0.63	-2.0
2,504,553	+		Sama_2068	0.63	-2.0
2,504,694	+				-0.4
2,504,695	-				+0.3
2,504,724	+				-1.2
2,504,763	-				+0.9
2,504,907	-		Sama_2069	0.17	+0.0
2,505,034	-		Sama_2069	0.48	+0.0
2,505,034	-		Sama_2069	0.48	-2.0
2,505,068	-		Sama_2069	0.56	-2.4
2,505,068	-		Sama_2069	0.56	-2.0
2,505,227	-				-1.2
2,505,227	-				+0.2
2,505,303	+				-1.1
2,505,304	-				-0.9
2,505,304	-				+0.8
2,505,305	+				+1.5
2,505,306	+				-1.0
2,505,307	-				+2.1
2,505,307	-				-0.6
2,505,307	-				+1.6
2,505,309	+				+0.5
2,505,310	-				+1.6
2,505,326	+				-0.4
2,505,326	+				-0.2
2,505,327	-				-0.5
2,505,327	-				-1.7
2,505,327	-				-1.2
2,505,327	-				-0.4
2,505,331	+				-0.5
2,505,380	+				-0.7
2,505,386	+				-2.5
2,505,386	+				-1.9
2,505,387	-				-0.3
2,505,387	-				+1.2
2,505,462	+		Sama_2070	0.23	+3.0
2,505,504	+		Sama_2070	0.32	+1.4
2,505,504	+		Sama_2070	0.32	-0.6
2,505,504	+		Sama_2070	0.32	-0.6
2,505,542	-		Sama_2070	0.40	-2.5
2,505,542	-		Sama_2070	0.40	+1.9
2,505,634	-		Sama_2070	0.59	+0.8
2,505,697	+		Sama_2070	0.72	+0.0
2,505,698	-		Sama_2070	0.72	-1.4
2,505,700	-		Sama_2070	0.72	+0.8
2,505,741	+		Sama_2070	0.81	-1.0
2,505,741	+		Sama_2070	0.81	+0.0
2,505,741	+		Sama_2070	0.81	-1.8
2,505,741	+		Sama_2070	0.81	-1.2
2,505,742	-		Sama_2070	0.81	-2.2
2,505,823	+				-0.2
2,505,824	-				+0.4
2,505,859	+				-1.5
2,505,859	+				-0.4
2,505,859	+				-0.6
2,505,859	+				+0.0
2,505,860	-				-1.4
2,505,860	-				-0.5
2,505,869	-				+1.6
2,505,878	-				-1.7
2,505,892	+				+2.3
2,505,893	-				-0.4
2,505,893	-				-0.3
2,505,903	+				-0.6
2,505,904	-				+0.0
2,505,935	+				-0.7
2,505,935	+				-3.1
2,505,962	-				+0.5
2,505,975	+				-1.2
2,505,976	-				-1.2
2,505,976	-				-2.7
2,505,976	-				-0.5
2,505,980	-				-2.4
2,505,980	-				-1.5
2,505,980	-				-2.1
2,505,980	-				+2.8
2,506,084	+				+0.3
2,506,085	-				-0.7
2,506,091	-				+0.9
2,506,111	+				+0.4
2,506,111	+				-0.7
2,506,111	+				-0.3
2,506,111	+				+0.6
2,506,112	-				+0.8
2,506,112	-				-1.5
2,506,112	-				-1.1
2,506,112	-				-2.9
2,506,112	-				+2.3
2,506,112	-				-1.2
2,506,112	-				+2.5
2,506,112	-				-0.5
2,506,112	-				-1.0
2,506,112	-				-0.7
2,506,112	-				-0.1
2,506,116	+				-2.6
2,506,116	+				+0.3
2,506,117	-				+1.1
2,506,142	-				-2.5
2,506,158	+				-1.0
2,506,158	+				-2.0
2,506,159	-				+1.5
2,506,159	-				-1.2
2,506,159	-				-0.4
2,506,159	-				-0.3
2,506,159	-				-2.6
2,506,198	+				-1.4
2,506,199	-				-1.5