Strain Fitness in Shewanella amazonensis SB2B around Sama_2013

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,446,504	+		Sama_2012	0.62	+2.6
2,446,524	+		Sama_2012	0.64	+0.0
2,446,524	+		Sama_2012	0.64	+0.0
2,446,525	-		Sama_2012	0.64	-0.7
2,446,525	-		Sama_2012	0.64	+0.0
2,446,536	-		Sama_2012	0.64	+3.5
2,446,633	-		Sama_2012	0.71	+0.8
2,446,680	+		Sama_2012	0.74	+0.4
2,446,681	-		Sama_2012	0.74	+0.2
2,446,698	+		Sama_2012	0.75	-1.1
2,446,698	+		Sama_2012	0.75	+1.1
2,446,698	+		Sama_2012	0.75	+0.6
2,446,698	+		Sama_2012	0.75	+1.0
2,446,699	-		Sama_2012	0.75	+1.2
2,446,699	-		Sama_2012	0.75	-0.1
2,446,699	-		Sama_2012	0.75	-1.0
2,446,779	-		Sama_2012	0.81	-0.4
2,446,831	+		Sama_2012	0.84	-2.1
2,446,832	-		Sama_2012	0.84	+1.6
2,446,838	-		Sama_2012	0.84	+1.3
2,446,838	-		Sama_2012	0.84	+0.6
2,446,874	-		Sama_2012	0.87	+0.6
2,446,918	+		Sama_2012	0.90	-1.2
2,446,919	-		Sama_2012	0.90	-0.2
2,446,979	+				-1.4
2,447,024	+				+0.6
2,447,029	+				+3.2
2,447,073	+				-0.8
2,447,073	+				-1.0
2,447,089	-				-1.8
2,447,089	-				-1.2
2,447,090	+				+1.2
2,447,091	-				-1.9
2,447,105	+				+0.0
2,447,105	+				+0.3
2,447,106	-				+0.6
2,447,106	-				-1.6
2,447,168	+				-1.7
2,447,168	+				+1.9
2,447,244	+				+2.3
2,447,253	+				-0.1
2,447,254	-				-1.4
2,447,254	-				+0.7
2,447,260	-				-1.6
2,447,310	+				-1.6
2,447,313	+				+0.9
2,447,313	+				+2.8
2,447,371	+				+0.6
2,447,371	+				-1.2
2,447,375	+				+2.2
2,447,376	-				-0.7
2,447,419	+				+1.7
2,447,419	+				+1.4
2,447,451	-				+0.6
2,447,464	+				+0.4
2,447,464	+				+2.1
2,447,476	+				-0.7
2,447,476	+				+0.3
2,447,476	+				-0.4
2,447,476	+				-1.9
2,447,476	+				-1.9
2,447,477	-				-1.4
2,447,477	-				-0.4
2,447,477	-				-1.4
2,447,510	+		Sama_2013	0.16	-1.4
2,447,510	+		Sama_2013	0.16	+0.6
2,447,510	+		Sama_2013	0.16	+0.0
2,447,511	-		Sama_2013	0.16	-2.2
2,447,674	+				-0.1
2,447,801	+				-1.6
2,447,801	+				+1.0
2,447,801	+				+0.7
2,447,801	+				+0.0
2,447,802	-				-1.0
2,447,802	-				+0.2
2,447,802	-				-0.7
2,447,802	-				+2.2
2,447,802	-				+0.4
2,447,802	-				-1.7
2,447,802	-				-0.4
2,447,802	-				-0.4
2,447,802	-				-0.4
2,447,802	-				+1.8
2,447,803	+				+0.0
2,447,803	+				+0.0
2,447,803	+				+0.0
2,447,804	-				-1.4
2,447,804	-				-0.4
2,447,804	-				-1.2
2,447,830	+				-2.5
2,447,830	+				-0.7
2,447,871	+				-0.7
2,447,933	+		Sama_2014	0.12	+1.3
2,447,933	+		Sama_2014	0.12	-1.2
2,447,956	+		Sama_2014	0.13	-1.7
2,447,956	+		Sama_2014	0.13	-0.4
2,447,956	+		Sama_2014	0.13	-1.2
2,447,956	+		Sama_2014	0.13	+1.9
2,447,957	-		Sama_2014	0.13	-0.4
2,447,957	-		Sama_2014	0.13	-0.1
2,447,957	-		Sama_2014	0.13	-1.9
2,447,958	+		Sama_2014	0.13	-0.4
2,447,958	+		Sama_2014	0.13	+1.4
2,447,958	+		Sama_2014	0.13	-1.7
2,447,959	-		Sama_2014	0.14	-0.4
2,447,959	-		Sama_2014	0.14	+1.0
2,447,959	-		Sama_2014	0.14	-1.0
2,447,959	-		Sama_2014	0.14	-1.6
2,447,959	-		Sama_2014	0.14	-2.1
2,447,959	-		Sama_2014	0.14	-1.2
2,447,959	-		Sama_2014	0.14	-1.6
2,448,000	-		Sama_2014	0.16	-2.4
2,448,020	+		Sama_2014	0.17	-1.3
2,448,021	-		Sama_2014	0.17	-0.6
2,448,021	-		Sama_2014	0.17	-0.2
2,448,082	+		Sama_2014	0.20	-0.1
2,448,083	-		Sama_2014	0.21	+0.0
2,448,092	+		Sama_2014	0.21	+1.1
2,448,093	-		Sama_2014	0.21	-1.5
2,448,093	-		Sama_2014	0.21	-0.6
2,448,093	-		Sama_2014	0.21	-0.1
2,448,097	+		Sama_2014	0.21	+0.1
2,448,097	+		Sama_2014	0.21	-0.3
2,448,097	+		Sama_2014	0.21	-1.0
2,448,098	-		Sama_2014	0.21	+0.6
2,448,098	-		Sama_2014	0.21	-0.9
2,448,098	-		Sama_2014	0.21	-1.4
2,448,126	-		Sama_2014	0.23	-0.6
2,448,126	-		Sama_2014	0.23	-0.4
2,448,126	-		Sama_2014	0.23	-2.2
2,448,126	-		Sama_2014	0.23	-0.1
2,448,126	-		Sama_2014	0.23	-0.2
2,448,130	-		Sama_2014	0.23	-2.2
2,448,267	-		Sama_2014	0.31	-3.0
2,448,267	-		Sama_2014	0.31	-1.1
2,448,267	-		Sama_2014	0.31	-1.6
2,448,267	-		Sama_2014	0.31	-1.1
2,448,270	-		Sama_2014	0.31	-0.5
2,448,365	+		Sama_2014	0.36	-0.7
2,448,366	-		Sama_2014	0.36	+0.6
2,448,459	+		Sama_2014	0.42	-0.2
2,448,459	+		Sama_2014	0.42	-0.5
2,448,459	+		Sama_2014	0.42	+0.1
2,448,460	-		Sama_2014	0.42	+0.7
2,448,460	-		Sama_2014	0.42	-0.2
2,448,460	-		Sama_2014	0.42	+0.8
2,448,460	-		Sama_2014	0.42	-0.4
2,448,460	-		Sama_2014	0.42	-0.6
2,448,460	-		Sama_2014	0.42	-1.9
2,448,460	-		Sama_2014	0.42	+0.3
2,448,460	-		Sama_2014	0.42	-0.4
2,448,460	-		Sama_2014	0.42	-0.7
2,448,465	+		Sama_2014	0.42	-0.7
2,448,465	+		Sama_2014	0.42	-0.7
2,448,465	+		Sama_2014	0.42	-1.7
2,448,466	-		Sama_2014	0.42	+1.6
2,448,470	+		Sama_2014	0.42	-0.7
2,448,591	-		Sama_2014	0.49	+0.6
2,448,623	+		Sama_2014	0.51	+1.4
2,448,624	-		Sama_2014	0.51	+1.1
2,448,672	+		Sama_2014	0.54	+1.6
2,448,672	+		Sama_2014	0.54	-1.9
2,448,672	+		Sama_2014	0.54	+0.0
2,448,672	+		Sama_2014	0.54	-3.0
2,448,672	+		Sama_2014	0.54	+0.4
2,448,672	+		Sama_2014	0.54	-0.0
2,448,673	-		Sama_2014	0.54	-0.8
2,448,673	-		Sama_2014	0.54	+1.1
2,448,673	-		Sama_2014	0.54	-1.6
2,448,673	-		Sama_2014	0.54	-2.1
2,448,673	-		Sama_2014	0.54	-1.1
2,448,673	-		Sama_2014	0.54	+0.3
2,448,673	-		Sama_2014	0.54	+1.5