Strain Fitness in Shewanella amazonensis SB2B around Sama_1999

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,427,587	+		Sama_1997	0.66	+0.6
2,427,603	+		Sama_1997	0.68	+0.4
2,427,604	-		Sama_1997	0.68	+1.3
2,427,604	-		Sama_1997	0.68	-1.8
2,427,604	-		Sama_1997	0.68	-0.2
2,427,634	-		Sama_1997	0.71	+2.0
2,427,722	+		Sama_1997	0.81	+1.0
2,427,722	+		Sama_1997	0.81	-0.4
2,427,808	+				-1.9
2,427,885	-				-0.8
2,427,937	-				+0.4
2,427,937	-				-2.0
2,427,937	-				-0.7
2,427,940	-				-2.9
2,427,947	-				+0.4
2,428,003	+				-0.4
2,428,003	+				+1.6
2,428,004	-				-2.8
2,428,004	-				+0.9
2,428,004	-				-2.7
2,428,033	+				-2.7
2,428,033	+				-1.2
2,428,033	+				-1.3
2,428,033	+				+1.0
2,428,033	+				-2.4
2,428,034	-				+1.4
2,428,034	-				-1.2
2,428,058	+				-0.2
2,428,059	-				+0.1
2,428,104	+		Sama_1998	0.19	+1.3
2,428,151	+		Sama_1998	0.30	+0.3
2,428,283	+		Sama_1998	0.60	-1.4
2,428,283	+		Sama_1998	0.60	-0.1
2,428,284	-		Sama_1998	0.60	+0.8
2,428,284	-		Sama_1998	0.60	-0.4
2,428,288	+		Sama_1998	0.61	-0.3
2,428,288	+		Sama_1998	0.61	+1.7
2,428,288	+		Sama_1998	0.61	-0.3
2,428,289	-		Sama_1998	0.61	+1.7
2,428,289	-		Sama_1998	0.61	+1.4
2,428,289	-		Sama_1998	0.61	+4.9
2,428,311	+		Sama_1998	0.66	+1.6
2,428,311	+		Sama_1998	0.66	+1.6
2,428,312	-		Sama_1998	0.67	+1.0
2,428,312	-		Sama_1998	0.67	-2.3
2,428,471	+				-1.2
2,428,494	+				+0.6
2,428,494	+				+0.4
2,428,494	+				-0.5
2,428,494	+				+0.8
2,428,497	-				+4.2
2,428,498	+				-0.6
2,428,499	-				-0.7
2,428,575	+		Sama_1999	0.10	-0.0
2,428,575	+		Sama_1999	0.10	+1.6
2,428,575	+		Sama_1999	0.10	+0.3
2,428,575	+		Sama_1999	0.10	-1.2
2,428,575	+		Sama_1999	0.10	-1.7
2,428,575	+		Sama_1999	0.10	+1.2
2,428,575	+		Sama_1999	0.10	-1.6
2,428,576	-		Sama_1999	0.11	-1.0
2,428,576	-		Sama_1999	0.11	-1.0
2,428,576	-		Sama_1999	0.11	+1.6
2,428,576	-		Sama_1999	0.11	+1.4
2,428,576	-		Sama_1999	0.11	-0.5
2,428,576	-		Sama_1999	0.11	-0.3
2,428,576	-		Sama_1999	0.11	-1.0
2,428,589	+		Sama_1999	0.12	+0.9
2,428,589	+		Sama_1999	0.12	+1.0
2,428,589	+		Sama_1999	0.12	-2.4
2,428,589	+		Sama_1999	0.12	-1.7
2,428,589	+		Sama_1999	0.12	-1.6
2,428,590	-		Sama_1999	0.12	-1.0
2,428,639	+		Sama_1999	0.17	+1.8
2,428,678	+		Sama_1999	0.22	+1.9
2,428,709	+		Sama_1999	0.25	+1.1
2,428,710	-		Sama_1999	0.25	+1.3
2,428,788	+		Sama_1999	0.33	-1.2
2,428,788	+		Sama_1999	0.33	+1.0
2,428,788	+		Sama_1999	0.33	-1.7
2,428,815	+		Sama_1999	0.36	-0.8
2,428,816	-		Sama_1999	0.36	-1.1
2,428,816	-		Sama_1999	0.36	-0.5
2,428,873	+		Sama_1999	0.42	-0.0
2,428,875	+		Sama_1999	0.43	-0.4
2,428,875	+		Sama_1999	0.43	+0.4
2,428,875	+		Sama_1999	0.43	+1.8
2,428,875	+		Sama_1999	0.43	-0.7
2,428,875	+		Sama_1999	0.43	+3.4
2,428,875	+		Sama_1999	0.43	+0.7
2,428,875	+		Sama_1999	0.43	-1.7
2,428,875	+		Sama_1999	0.43	+0.0
2,428,875	+		Sama_1999	0.43	-0.5
2,428,876	-		Sama_1999	0.43	+1.9
2,428,876	-		Sama_1999	0.43	+0.7
2,428,876	-		Sama_1999	0.43	+0.3
2,428,876	-		Sama_1999	0.43	+1.6
2,428,876	-		Sama_1999	0.43	+1.3
2,428,876	-		Sama_1999	0.43	+0.8
2,428,914	+		Sama_1999	0.47	+0.8
2,428,960	+		Sama_1999	0.52	-1.2
2,428,961	-		Sama_1999	0.52	-2.1
2,429,025	+		Sama_1999	0.59	-1.2
2,429,025	+		Sama_1999	0.59	+2.2
2,429,026	-		Sama_1999	0.59	+3.0
2,429,074	+		Sama_1999	0.64	-0.6
2,429,075	-		Sama_1999	0.64	-2.0
2,429,247	+		Sama_1999	0.83	-1.0
2,429,247	+		Sama_1999	0.83	+0.2
2,429,267	+		Sama_1999	0.85	-1.2
2,429,267	+		Sama_1999	0.85	+0.3
2,429,274	+		Sama_1999	0.86	+0.9
2,429,274	+		Sama_1999	0.86	+1.1
2,429,274	+		Sama_1999	0.86	-1.6
2,429,323	+				+1.1
2,429,323	+				+1.0
2,429,333	-				-2.1
2,429,357	-				-1.5
2,429,403	+				-0.7
2,429,404	-				+2.2
2,429,404	-				-1.7
2,429,528	-				+1.6
2,429,528	-				-1.4
2,429,528	-				-2.2
2,429,528	-				+0.4
2,429,528	-				-0.5
2,429,528	-				-2.6
2,429,560	+				-1.7
2,429,561	-				+0.3
2,429,561	-				-0.2
2,429,561	-				+2.2
2,429,561	-				+0.7
2,429,561	-				+1.9
2,429,561	-				+1.0
2,429,561	-				-1.0
2,429,561	-				+0.3
2,429,637	+				-0.2
2,429,662	-				-1.1
2,429,709	-		Sama_2000	0.13	+0.7
2,429,709	-		Sama_2000	0.13	-1.0
2,429,709	-		Sama_2000	0.13	-0.0
2,429,810	-		Sama_2000	0.25	-0.7
2,429,900	+		Sama_2000	0.36	+0.6
2,429,900	+		Sama_2000	0.36	+1.9
2,429,901	-		Sama_2000	0.36	+0.2
2,429,901	-		Sama_2000	0.36	-0.3
2,429,901	-		Sama_2000	0.36	-0.4
2,429,913	+		Sama_2000	0.37	+0.2
2,429,921	-		Sama_2000	0.38	+1.0
2,429,949	+		Sama_2000	0.41	+0.4
2,429,950	-		Sama_2000	0.41	+1.4
2,429,962	-		Sama_2000	0.43	-1.4
2,429,983	+		Sama_2000	0.45	-0.2
2,429,990	-		Sama_2000	0.46	-2.3
2,429,999	+		Sama_2000	0.47	+0.9
2,430,000	-		Sama_2000	0.47	+0.3
2,430,013	+		Sama_2000	0.49	-1.9
2,430,014	-		Sama_2000	0.49	-1.0
2,430,038	+		Sama_2000	0.52	+1.2
2,430,038	+		Sama_2000	0.52	-1.3
2,430,039	-		Sama_2000	0.52	-1.5
2,430,039	-		Sama_2000	0.52	+2.1
2,430,129	+		Sama_2000	0.62	-0.0
2,430,194	-		Sama_2000	0.70	-0.0
2,430,194	-		Sama_2000	0.70	-1.4
2,430,235	+		Sama_2000	0.75	-1.4
2,430,235	+		Sama_2000	0.75	-1.9
2,430,334	+		Sama_2000	0.86	+1.6
2,430,335	-		Sama_2000	0.86	-0.7
2,430,335	-		Sama_2000	0.86	-1.4
2,430,335	-		Sama_2000	0.86	-0.4
2,430,341	-		Sama_2000	0.87	-1.9
2,430,341	-		Sama_2000	0.87	+1.8
2,430,341	-		Sama_2000	0.87	-0.3
2,430,341	-		Sama_2000	0.87	+1.6
2,430,341	-		Sama_2000	0.87	+0.3
2,430,344	-		Sama_2000	0.87	-0.0
2,430,397	+				-1.0
2,430,398	-				+0.9