Strain Fitness in Shewanella amazonensis SB2B around Sama_1989

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,415,492	+		Sama_1988	0.54	-1.2
2,415,493	-		Sama_1988	0.54	-0.9
2,415,493	-		Sama_1988	0.54	+2.2
2,415,493	-		Sama_1988	0.54	+1.2
2,415,531	-		Sama_1988	0.58	-0.6
2,415,550	+		Sama_1988	0.60	+0.6
2,415,551	-		Sama_1988	0.60	+3.0
2,415,551	-		Sama_1988	0.60	+0.9
2,415,551	-		Sama_1988	0.60	+1.6
2,415,551	-		Sama_1988	0.60	-0.3
2,415,551	-		Sama_1988	0.60	+0.1
2,415,551	-		Sama_1988	0.60	+0.3
2,415,551	-		Sama_1988	0.60	+1.0
2,415,574	-		Sama_1988	0.62	+0.6
2,415,574	-		Sama_1988	0.62	+0.1
2,415,574	-		Sama_1988	0.62	+1.4
2,415,574	-		Sama_1988	0.62	-0.1
2,415,605	+		Sama_1988	0.65	-1.6
2,415,606	-		Sama_1988	0.65	-2.4
2,415,606	-		Sama_1988	0.65	-0.6
2,415,677	+		Sama_1988	0.72	+4.6
2,415,677	+		Sama_1988	0.72	-0.4
2,415,678	-		Sama_1988	0.73	+1.6
2,415,678	-		Sama_1988	0.73	-0.6
2,415,768	-		Sama_1988	0.82	+0.2
2,415,799	+		Sama_1988	0.85	-0.8
2,415,846	-		Sama_1988	0.89	+3.2
2,415,953	+				+0.1
2,415,953	+				-0.2
2,415,981	+				+0.6
2,415,981	+				+0.8
2,415,981	+				-0.0
2,415,981	+				+1.0
2,415,982	-				+0.9
2,419,435	+		Sama_1989	0.88	+1.1
2,419,436	-		Sama_1989	0.88	+1.0
2,419,711	+				-1.0
2,419,711	+				-1.5
2,419,736	+				-0.8
2,419,736	+				-0.2
2,419,736	+				+2.1
2,419,736	+				-1.7
2,419,736	+				+1.8
2,419,736	+				+1.8
2,419,737	-				-1.2
2,419,760	+				-0.6
2,419,779	+				+0.3
2,419,844	+				+1.1
2,419,870	+				-0.6
2,419,871	-				+1.6
2,419,901	-				-0.4
2,419,901	-				+2.4
2,419,944	+				+0.2
2,419,944	+				-0.2
2,419,944	+				-1.0
2,419,945	-				-0.8
2,419,978	-				+2.0
2,419,978	-				-0.4
2,419,998	-				+0.6
2,420,013	-				+1.6
2,420,013	-				-0.8
2,420,061	+				+1.2
2,420,071	+				-1.4
2,420,186	+				+1.0
2,420,187	-				+0.7
2,420,187	-				-0.6
2,420,198	-				+0.9
2,420,198	-				+1.6
2,420,200	+				+1.1
2,420,201	-				-0.2
2,420,211	+		Sama_1990	0.10	+0.6
2,420,212	-		Sama_1990	0.10	+1.8
2,420,309	+		Sama_1990	0.17	-1.0
2,420,310	-		Sama_1990	0.17	-1.6
2,420,516	+		Sama_1990	0.30	-0.2
2,420,517	-		Sama_1990	0.30	+0.5
2,420,542	+		Sama_1990	0.32	+0.0
2,420,543	-		Sama_1990	0.32	-0.9
2,420,554	+		Sama_1990	0.32	-1.0
2,420,800	-		Sama_1990	0.48	+1.8