Strain Fitness in Shewanella amazonensis SB2B around Sama_1890

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,304,849	+				-2.2
2,304,870	-				-1.0
2,304,905	-				-2.5
2,304,905	-				-0.4
2,304,966	-				-0.1
2,304,972	+				-2.4
2,304,974	+				-2.8
2,304,974	+				+0.8
2,304,990	+				-1.5
2,304,991	-				-1.0
2,305,015	+				-0.5
2,305,016	-				+0.6
2,305,016	-				-1.9
2,305,020	-				-2.4
2,305,133	+		Sama_1889	0.30	-1.4
2,305,266	+		Sama_1889	0.71	+0.2
2,305,311	+		Sama_1889	0.85	-0.3
2,305,330	+				-2.1
2,305,371	+				+0.5
2,305,403	-				-1.3
2,305,403	-				+1.8
2,305,450	-				-0.6
2,305,450	-				+1.5
2,305,480	-				-1.5
2,305,505	+				-0.1
2,305,593	-				-0.9
2,305,593	-				-1.1
2,305,593	-				+1.6
2,305,638	-				-1.5
2,305,638	-				-0.6
2,305,646	-				-0.2
2,305,800	+				-2.7
2,305,800	+				+0.5
2,305,800	+				+1.5
2,305,801	-				-2.0
2,305,801	-				-2.5
2,305,801	-				-0.3
2,305,875	+				-1.7
2,305,875	+				-0.8
2,305,875	+				-1.2
2,305,883	+				+1.0
2,306,025	+		Sama_1890	0.19	-1.1
2,306,026	-		Sama_1890	0.19	-1.5
2,306,068	-		Sama_1890	0.24	-1.1
2,306,114	+		Sama_1890	0.28	-0.9
2,306,114	+		Sama_1890	0.28	-1.5
2,306,114	+		Sama_1890	0.28	+1.9
2,306,115	-		Sama_1890	0.28	+0.5
2,306,115	-		Sama_1890	0.28	-2.4
2,306,115	-		Sama_1890	0.28	+0.9
2,306,115	-		Sama_1890	0.28	-0.8
2,306,115	-		Sama_1890	0.28	+1.9
2,306,131	+		Sama_1890	0.30	-0.4
2,306,131	+		Sama_1890	0.30	-0.9
2,306,146	-		Sama_1890	0.32	+0.6
2,306,149	+		Sama_1890	0.32	-0.1
2,306,150	-		Sama_1890	0.32	-1.4
2,306,150	-		Sama_1890	0.32	+0.6
2,306,195	-		Sama_1890	0.36	+0.5
2,306,246	-		Sama_1890	0.42	-0.8
2,306,290	-		Sama_1890	0.46	+0.3
2,306,290	-		Sama_1890	0.46	+1.2
2,306,403	-		Sama_1890	0.58	-2.6
2,306,403	-		Sama_1890	0.58	+0.7
2,306,466	-		Sama_1890	0.64	-2.1
2,306,466	-		Sama_1890	0.64	-0.1
2,306,484	+		Sama_1890	0.66	-0.8
2,306,484	+		Sama_1890	0.66	-0.5
2,306,485	-		Sama_1890	0.66	-0.8
2,306,485	-		Sama_1890	0.66	-0.5
2,306,487	+		Sama_1890	0.66	-2.7
2,306,491	+		Sama_1890	0.66	-3.0
2,306,491	+		Sama_1890	0.66	-1.0
2,306,491	+		Sama_1890	0.66	+0.8
2,306,491	+		Sama_1890	0.66	-0.7
2,306,491	+		Sama_1890	0.66	-0.1
2,306,492	-		Sama_1890	0.67	+0.2
2,306,512	+		Sama_1890	0.69	-0.8
2,306,535	+		Sama_1890	0.71	-1.5
2,306,566	+		Sama_1890	0.74	-0.7
2,306,567	-		Sama_1890	0.74	-0.0
2,306,609	+		Sama_1890	0.78	+0.6
2,306,610	-		Sama_1890	0.79	+0.9
2,306,634	+		Sama_1890	0.81	-1.5
2,306,634	+		Sama_1890	0.81	-2.9
2,306,634	+		Sama_1890	0.81	-1.8
2,306,635	-		Sama_1890	0.81	-1.4
2,306,655	-		Sama_1890	0.83	+1.0
2,306,862	-				-0.8
2,306,898	+				-0.2
2,306,898	+				+1.3
2,306,899	-				-1.5
2,306,900	+				+1.9
2,306,901	-				+0.5
2,306,908	+				+2.8
2,306,909	-				-0.7
2,306,909	-				+1.5
2,306,927	+				-0.7
2,306,928	-				+3.1
2,306,947	+				+2.3
2,306,947	+				+1.4
2,306,948	-				+1.2
2,306,948	-				-1.5
2,306,948	-				+1.2
2,306,953	+				-0.7
2,306,996	+		Sama_1891	0.13	+1.8
2,306,996	+		Sama_1891	0.13	+0.0
2,306,996	+		Sama_1891	0.13	+1.0
2,306,996	+		Sama_1891	0.13	-1.7
2,306,996	+		Sama_1891	0.13	+1.5
2,307,023	+		Sama_1891	0.15	+1.4
2,307,059	+		Sama_1891	0.18	-0.7
2,307,100	+		Sama_1891	0.21	+1.3
2,307,100	+		Sama_1891	0.21	+1.2
2,307,163	+		Sama_1891	0.25	-0.1
2,307,164	-		Sama_1891	0.26	+0.9
2,307,230	+		Sama_1891	0.31	-1.7
2,307,230	+		Sama_1891	0.31	-0.5
2,307,231	-		Sama_1891	0.31	+1.1
2,307,231	-		Sama_1891	0.31	-0.9
2,307,260	+		Sama_1891	0.33	+1.3
2,307,260	+		Sama_1891	0.33	-1.3
2,307,260	+		Sama_1891	0.33	-1.2
2,307,261	-		Sama_1891	0.33	+1.6
2,307,301	+		Sama_1891	0.36	-1.3
2,307,381	-		Sama_1891	0.42	-1.7
2,307,417	-		Sama_1891	0.45	-1.3
2,307,452	+		Sama_1891	0.48	+1.8
2,307,453	-		Sama_1891	0.48	+0.4
2,307,453	-		Sama_1891	0.48	-1.7
2,307,499	-		Sama_1891	0.51	-0.1
2,307,519	-		Sama_1891	0.53	-2.0
2,307,529	-		Sama_1891	0.53	-0.8
2,307,543	+		Sama_1891	0.55	+0.1
2,307,543	+		Sama_1891	0.55	+1.2
2,307,543	+		Sama_1891	0.55	+2.4
2,307,543	+		Sama_1891	0.55	+0.5
2,307,543	+		Sama_1891	0.55	-0.6
2,307,602	+		Sama_1891	0.59	-1.3
2,307,602	+		Sama_1891	0.59	+1.9
2,307,608	-		Sama_1891	0.59	-0.1
2,307,665	+		Sama_1891	0.64	-2.0
2,307,665	+		Sama_1891	0.64	-0.8
2,307,735	+		Sama_1891	0.69	+1.0
2,307,735	+		Sama_1891	0.69	+0.5
2,307,757	-		Sama_1891	0.71	+2.1
2,307,757	-		Sama_1891	0.71	-0.4
2,307,757	-		Sama_1891	0.71	-0.3
2,307,760	+		Sama_1891	0.71	+0.8