Strain Fitness in Shewanella amazonensis SB2B around Sama_1881

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,295,853	-		Sama_1879	0.86	-2.2
2,295,866	-		Sama_1879	0.87	-1.1
2,295,889	+		Sama_1879	0.89	-1.7
2,295,889	+		Sama_1879	0.89	-2.0
2,295,889	+		Sama_1879	0.89	-0.1
2,295,890	-		Sama_1879	0.89	-2.4
2,295,890	-		Sama_1879	0.89	-0.5
2,295,890	-		Sama_1879	0.89	-1.4
2,295,993	-				-1.3
2,295,993	-				-0.2
2,296,750	-				-0.1
2,296,750	-				-0.5
2,296,754	-				+1.2
2,296,767	-				+1.5
2,296,785	-				+0.5
2,296,786	+				-2.9
2,296,787	-				+0.3
2,296,806	+				+0.5
2,296,807	-				+0.6
2,296,811	+				-1.5
2,296,845	-				-1.2
2,296,849	-				-2.0
2,296,909	-	rnhA	Sama_1881	0.19	+1.5
2,296,909	-	rnhA	Sama_1881	0.19	+0.9
2,296,909	-	rnhA	Sama_1881	0.19	-1.8
2,296,909	-	rnhA	Sama_1881	0.19	-1.8
2,296,910	+	rnhA	Sama_1881	0.19	-1.5
2,296,964	+	rnhA	Sama_1881	0.30	-0.5
2,296,985	-	rnhA	Sama_1881	0.35	+0.2
2,297,003	+	rnhA	Sama_1881	0.39	-1.3
2,297,043	+	rnhA	Sama_1881	0.47	-0.1
2,297,043	+	rnhA	Sama_1881	0.47	-1.8
2,297,044	-	rnhA	Sama_1881	0.47	-2.0
2,297,044	-	rnhA	Sama_1881	0.47	-2.0
2,297,045	+	rnhA	Sama_1881	0.48	-2.3
2,297,045	+	rnhA	Sama_1881	0.48	-1.8
2,297,045	+	rnhA	Sama_1881	0.48	-1.3
2,297,046	-	rnhA	Sama_1881	0.48	-1.5
2,297,280	+				+0.6
2,297,335	-				-2.6
2,297,641	+		Sama_1882	0.34	-1.8
2,297,671	-		Sama_1882	0.37	+1.0
2,297,671	-		Sama_1882	0.37	-1.3
2,297,851	+		Sama_1882	0.57	+1.7
2,297,851	+		Sama_1882	0.57	-0.2
2,297,851	+		Sama_1882	0.57	+2.5
2,297,935	+		Sama_1882	0.66	+0.7
2,297,935	+		Sama_1882	0.66	+0.4
2,297,936	-		Sama_1882	0.66	-1.5
2,297,936	-		Sama_1882	0.66	-0.8
2,297,941	+		Sama_1882	0.67	-1.1
2,297,942	-		Sama_1882	0.67	+0.2
2,297,956	+		Sama_1882	0.69	-0.8
2,297,956	+		Sama_1882	0.69	-0.5
2,297,957	-		Sama_1882	0.69	-2.4
2,297,957	-		Sama_1882	0.69	+1.1
2,297,990	-		Sama_1882	0.72	-0.6
2,297,990	-		Sama_1882	0.72	-0.1
2,298,179	-				-0.4