Strain Fitness in Shewanella amazonensis SB2B around Sama_1879

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,293,739	+		Sama_1878	0.23	+0.6
2,293,748	-		Sama_1878	0.25	+0.8
2,293,748	-		Sama_1878	0.25	+1.5
2,293,802	+		Sama_1878	0.31	+1.8
2,293,802	+		Sama_1878	0.31	-1.3
2,293,811	+		Sama_1878	0.32	-2.4
2,293,846	+		Sama_1878	0.36	-0.4
2,293,846	+		Sama_1878	0.36	+0.1
2,293,860	-		Sama_1878	0.38	-0.3
2,293,896	-		Sama_1878	0.42	-1.1
2,293,898	+		Sama_1878	0.42	+3.0
2,293,898	+		Sama_1878	0.42	-2.3
2,293,898	+		Sama_1878	0.42	-1.1
2,293,898	+		Sama_1878	0.42	+0.2
2,293,899	-		Sama_1878	0.42	+1.6
2,293,899	-		Sama_1878	0.42	+1.8
2,293,899	-		Sama_1878	0.42	+0.3
2,293,899	-		Sama_1878	0.42	-1.7
2,293,902	+		Sama_1878	0.43	-1.2
2,293,902	+		Sama_1878	0.43	-2.1
2,293,902	+		Sama_1878	0.43	-2.0
2,293,902	+		Sama_1878	0.43	-1.1
2,293,902	+		Sama_1878	0.43	-2.1
2,293,903	-		Sama_1878	0.43	+2.3
2,293,929	+		Sama_1878	0.46	-1.5
2,293,967	+		Sama_1878	0.51	+0.6
2,293,967	+		Sama_1878	0.51	+0.8
2,293,968	-		Sama_1878	0.51	+2.2
2,293,968	-		Sama_1878	0.51	-0.8
2,294,011	+		Sama_1878	0.56	+0.6
2,294,011	+		Sama_1878	0.56	+0.6
2,294,012	-		Sama_1878	0.56	-2.3
2,294,012	-		Sama_1878	0.56	-0.4
2,294,021	-		Sama_1878	0.57	+1.1
2,294,138	+		Sama_1878	0.71	+3.2
2,294,138	+		Sama_1878	0.71	-0.7
2,294,139	-		Sama_1878	0.71	+0.0
2,294,264	+		Sama_1878	0.86	+2.4
2,294,264	+		Sama_1878	0.86	-2.1
2,294,264	+		Sama_1878	0.86	-1.7
2,294,264	+		Sama_1878	0.86	+0.5
2,294,268	+		Sama_1878	0.86	+0.2
2,294,270	+		Sama_1878	0.87	+0.6
2,294,283	+		Sama_1878	0.88	-1.8
2,294,303	+				-2.6
2,294,303	+				+2.4
2,294,303	+				+2.7
2,294,303	+				-1.5
2,294,303	+				-1.3
2,294,303	+				-2.0
2,294,342	+				-0.5
2,294,342	+				-0.8
2,294,402	+				+0.8
2,294,402	+				-0.8
2,294,503	-				-1.7
2,294,503	-				+0.1
2,294,507	-				-0.5
2,294,507	-				-0.8
2,294,507	-				+1.4
2,294,659	-				-1.3
2,294,659	-				+1.2
2,294,661	-				+0.7
2,294,661	-				+0.9
2,294,865	-		Sama_1879	0.11	+1.2
2,294,970	-		Sama_1879	0.19	-1.8
2,294,970	-		Sama_1879	0.19	+3.5
2,295,008	-		Sama_1879	0.22	+1.3
2,295,008	-		Sama_1879	0.22	+3.4
2,295,090	+		Sama_1879	0.28	+0.3
2,295,091	-		Sama_1879	0.28	+2.9
2,295,094	+		Sama_1879	0.28	-1.8
2,295,250	+		Sama_1879	0.40	-0.1
2,295,251	-		Sama_1879	0.40	+1.2
2,295,256	-		Sama_1879	0.41	-2.6
2,295,286	+		Sama_1879	0.43	+0.5
2,295,286	+		Sama_1879	0.43	-1.3
2,295,378	+		Sama_1879	0.50	-0.8
2,295,463	+		Sama_1879	0.56	+0.0
2,295,464	-		Sama_1879	0.56	+0.5
2,295,465	+		Sama_1879	0.56	-1.1
2,295,466	-		Sama_1879	0.57	-1.2
2,295,553	-		Sama_1879	0.63	-0.5
2,295,553	-		Sama_1879	0.63	-0.5
2,295,651	-		Sama_1879	0.71	-0.7
2,295,651	-		Sama_1879	0.71	-1.8
2,295,667	+		Sama_1879	0.72	+0.5
2,295,668	-		Sama_1879	0.72	+1.9
2,295,668	-		Sama_1879	0.72	+0.2
2,295,671	+		Sama_1879	0.72	+0.8
2,295,671	+		Sama_1879	0.72	-0.5
2,295,672	-		Sama_1879	0.72	+1.8
2,295,672	-		Sama_1879	0.72	+0.8
2,295,805	-		Sama_1879	0.82	-2.3
2,295,853	-		Sama_1879	0.86	-2.2
2,295,866	-		Sama_1879	0.87	-1.1
2,295,889	+		Sama_1879	0.89	-1.7
2,295,889	+		Sama_1879	0.89	-2.0
2,295,889	+		Sama_1879	0.89	-0.1
2,295,890	-		Sama_1879	0.89	-2.4
2,295,890	-		Sama_1879	0.89	-0.5
2,295,890	-		Sama_1879	0.89	-1.4
2,295,993	-				-1.3
2,295,993	-				-0.2
2,296,750	-				-0.1
2,296,750	-				-0.5
2,296,754	-				+1.2
2,296,767	-				+1.5
2,296,785	-				+0.5
2,296,786	+				-2.9
2,296,787	-				+0.3
2,296,806	+				+0.5
2,296,807	-				+0.6
2,296,811	+				-1.5
2,296,845	-				-1.2
2,296,849	-				-2.0
2,296,909	-	rnhA	Sama_1881	0.19	+1.5
2,296,909	-	rnhA	Sama_1881	0.19	+0.9
2,296,909	-	rnhA	Sama_1881	0.19	-1.8
2,296,909	-	rnhA	Sama_1881	0.19	-1.8
2,296,910	+	rnhA	Sama_1881	0.19	-1.5
2,296,964	+	rnhA	Sama_1881	0.30	-0.5
2,296,985	-	rnhA	Sama_1881	0.35	+0.2
2,297,003	+	rnhA	Sama_1881	0.39	-1.3