Strain Fitness in Shewanella amazonensis SB2B around Sama_1875

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,287,794	-				-0.5
2,287,825	+				-0.1
2,287,836	-				-1.5
2,287,857	-				-2.7
2,287,857	-				-0.7
2,287,857	-				-0.1
2,287,929	+				+0.4
2,287,929	+				-3.4
2,287,930	-				+3.5
2,287,930	-				-1.1
2,287,931	+				-1.1
2,287,931	+				-0.8
2,287,931	+				-0.3
2,287,932	-				-0.3
2,287,968	+				-0.1
2,287,968	+				-1.6
2,287,968	+				-0.1
2,287,969	-				+1.4
2,287,969	-				-0.8
2,287,969	-				-0.1
2,287,969	-				-1.7
2,288,005	+				+0.2
2,288,006	-				-1.7
2,288,010	+				-0.8
2,288,117	+		Sama_1874	0.16	-1.0
2,288,118	-		Sama_1874	0.16	+0.4
2,288,118	-		Sama_1874	0.16	-0.2
2,288,118	-		Sama_1874	0.16	+3.3
2,288,194	-		Sama_1874	0.29	+0.2
2,288,256	+		Sama_1874	0.39	+1.8
2,288,371	+		Sama_1874	0.57	-2.9
2,288,371	+		Sama_1874	0.57	+0.6
2,288,371	+		Sama_1874	0.57	+1.1
2,288,372	-		Sama_1874	0.57	+1.2
2,288,409	-		Sama_1874	0.63	+1.3
2,288,576	+				-2.2
2,288,577	-				-0.8
2,288,654	-				-0.1
2,288,664	+				-1.1
2,288,742	-				-0.8
2,288,778	-				-2.0
2,288,804	+				-0.1
2,288,804	+				-1.3
2,288,805	-				-1.5
2,288,810	+				+0.5
2,288,854	+				-1.1
2,288,886	+		Sama_1875	0.10	+0.7
2,288,886	+		Sama_1875	0.10	+1.6
2,288,887	-		Sama_1875	0.10	-0.8
2,288,912	-		Sama_1875	0.11	-2.8
2,288,953	-		Sama_1875	0.13	-0.4
2,288,978	+		Sama_1875	0.14	-1.3
2,288,978	+		Sama_1875	0.14	+1.5
2,288,979	-		Sama_1875	0.14	+0.9
2,289,014	+		Sama_1875	0.15	-1.8
2,289,014	+		Sama_1875	0.15	-0.7
2,289,014	+		Sama_1875	0.15	+0.9
2,289,014	+		Sama_1875	0.15	+0.5
2,289,014	+		Sama_1875	0.15	+1.5
2,289,015	-		Sama_1875	0.15	+1.5
2,289,032	-		Sama_1875	0.16	+1.0
2,289,137	-		Sama_1875	0.20	+1.2
2,289,153	-		Sama_1875	0.21	+0.7
2,289,193	+		Sama_1875	0.23	-2.0
2,289,315	+		Sama_1875	0.28	+0.9
2,289,323	+		Sama_1875	0.28	-0.9
2,289,324	-		Sama_1875	0.28	-0.1
2,289,324	-		Sama_1875	0.28	-0.8
2,289,325	+		Sama_1875	0.28	-0.8
2,289,325	+		Sama_1875	0.28	-1.1
2,289,325	+		Sama_1875	0.28	-2.0
2,289,326	-		Sama_1875	0.28	-0.2
2,289,326	-		Sama_1875	0.28	-1.8
2,289,395	-		Sama_1875	0.31	-0.8
2,289,563	-		Sama_1875	0.38	-0.1
2,289,564	-		Sama_1875	0.38	-0.8
2,289,653	+		Sama_1875	0.42	+0.2
2,289,689	+		Sama_1875	0.43	+0.4
2,289,689	+		Sama_1875	0.43	+0.9
2,289,689	+		Sama_1875	0.43	+0.9
2,289,689	+		Sama_1875	0.43	-1.7
2,289,689	+		Sama_1875	0.43	+1.6
2,289,689	+		Sama_1875	0.43	+1.1
2,289,689	+		Sama_1875	0.43	-0.4
2,289,690	-		Sama_1875	0.43	-0.6
2,289,690	-		Sama_1875	0.43	-0.3
2,289,690	-		Sama_1875	0.43	+0.7
2,289,690	-		Sama_1875	0.43	+0.9
2,289,698	+		Sama_1875	0.43	+0.9
2,289,802	+		Sama_1875	0.48	-1.5
2,289,876	-		Sama_1875	0.51	-1.1
2,289,956	-		Sama_1875	0.54	-0.4
2,289,977	-		Sama_1875	0.55	+2.5
2,290,016	+		Sama_1875	0.56	-1.2
2,290,017	-		Sama_1875	0.56	-0.8
2,290,225	+		Sama_1875	0.65	+1.3
2,290,229	-		Sama_1875	0.65	+1.9
2,290,229	-		Sama_1875	0.65	-0.5
2,290,229	-		Sama_1875	0.65	+2.2
2,290,247	+		Sama_1875	0.66	+1.7
2,290,247	+		Sama_1875	0.66	+0.9
2,290,247	+		Sama_1875	0.66	-1.6
2,290,248	-		Sama_1875	0.66	-2.0
2,290,456	-		Sama_1875	0.74	+0.5
2,290,521	-		Sama_1875	0.77	+1.8
2,290,563	+		Sama_1875	0.79	+0.8
2,290,563	+		Sama_1875	0.79	+0.9
2,290,563	+		Sama_1875	0.79	+1.0
2,290,563	+		Sama_1875	0.79	-1.1
2,290,564	-		Sama_1875	0.79	+2.3
2,290,564	-		Sama_1875	0.79	+0.3
2,290,564	-		Sama_1875	0.79	+0.1
2,290,610	-		Sama_1875	0.81	+0.1
2,290,647	+		Sama_1875	0.82	+1.9
2,290,699	+		Sama_1875	0.84	+1.8
2,290,761	+		Sama_1875	0.87	-2.8
2,290,761	+		Sama_1875	0.87	-2.1
2,290,761	+		Sama_1875	0.87	-1.1
2,290,762	-		Sama_1875	0.87	+0.5
2,290,762	-		Sama_1875	0.87	-0.8
2,290,762	-		Sama_1875	0.87	-0.8
2,290,801	+		Sama_1875	0.88	+3.4
2,290,805	+		Sama_1875	0.89	-2.1
2,290,805	+		Sama_1875	0.89	-1.1
2,290,805	+		Sama_1875	0.89	-1.3
2,290,806	-		Sama_1875	0.89	-2.0
2,290,979	+				-0.5
2,291,081	+				+0.2
2,291,084	+				+0.3
2,291,084	+				+0.1
2,291,104	+				-2.1
2,291,135	-				-0.8
2,291,223	+				+0.7
2,291,250	+				-0.8
2,291,250	+				+0.1
2,291,251	-				+1.4
2,291,251	-				+0.6
2,291,251	-				+0.3
2,291,254	+				-0.1
2,291,255	-				-1.1
2,291,255	-				-1.1
2,291,300	+				-0.3
2,291,301	-				+3.0
2,291,301	-				+0.6
2,291,303	+				-0.7
2,291,304	-				+0.2
2,291,353	+				-1.5
2,291,366	+				-0.4
2,291,379	+				-0.2
2,291,379	+				-2.1
2,291,380	-				+0.8
2,291,493	-		Sama_1876	0.12	+1.5
2,291,596	+		Sama_1876	0.17	+0.8
2,291,597	-		Sama_1876	0.17	+1.3
2,291,605	+		Sama_1876	0.18	+0.6
2,291,605	+		Sama_1876	0.18	-1.5
2,291,606	-		Sama_1876	0.18	-1.2
2,291,703	-		Sama_1876	0.23	-1.5
2,291,792	+		Sama_1876	0.28	-0.2
2,291,792	+		Sama_1876	0.28	-2.6
2,291,792	+		Sama_1876	0.28	+0.4
2,291,792	+		Sama_1876	0.28	-0.1
2,291,792	+		Sama_1876	0.28	+0.5
2,291,793	-		Sama_1876	0.28	-0.8
2,291,793	-		Sama_1876	0.28	+0.2
2,291,793	-		Sama_1876	0.28	+1.8
2,291,793	-		Sama_1876	0.28	+2.5
2,291,861	+		Sama_1876	0.32	-0.3
2,291,862	-		Sama_1876	0.32	-1.6
2,291,865	+		Sama_1876	0.32	-1.5
2,291,885	-		Sama_1876	0.33	-1.9
2,291,977	-		Sama_1876	0.38	+2.1
2,291,977	-		Sama_1876	0.38	-2.4
2,292,064	+		Sama_1876	0.43	-0.1
2,292,065	-		Sama_1876	0.43	+0.9