Strain Fitness in Shewanella amazonensis SB2B around Sama_1641

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,006,102	-		Sama_1640	0.20	-1.1
2,006,234	-		Sama_1640	0.32	-1.8
2,007,013	-				-1.4
2,007,013	-				-1.7
2,007,013	-				-0.1
2,007,064	-				-0.3
2,007,216	-		Sama_1641	0.20	-1.4
2,007,289	-		Sama_1641	0.26	-2.3
2,008,190	-				-2.0
2,008,190	-				+0.9
2,008,190	-				-1.9
2,008,230	-				+0.9
2,008,310	-				-1.0
2,008,310	-				+1.7
2,008,310	-				+0.7
2,008,319	+				-1.0
2,008,320	-				-1.4
2,008,320	-				+2.5
2,008,350	+				+1.5
2,008,350	+				+0.5
2,008,388	+		Sama_1642	0.11	-2.3
2,008,388	+		Sama_1642	0.11	-1.4
2,008,388	+		Sama_1642	0.11	-2.1
2,008,388	+		Sama_1642	0.11	+1.0
2,008,388	+		Sama_1642	0.11	-1.9
2,008,388	+		Sama_1642	0.11	-0.3
2,008,388	+		Sama_1642	0.11	-1.8
2,008,389	-		Sama_1642	0.12	-1.5
2,008,389	-		Sama_1642	0.12	+0.0
2,008,389	-		Sama_1642	0.12	-1.4
2,008,389	-		Sama_1642	0.12	+2.0
2,008,389	-		Sama_1642	0.12	+1.5
2,008,390	+		Sama_1642	0.12	+2.7
2,008,390	+		Sama_1642	0.12	-1.8
2,008,390	+		Sama_1642	0.12	-1.7
2,008,390	+		Sama_1642	0.12	-0.1
2,008,390	+		Sama_1642	0.12	+0.2
2,008,391	-		Sama_1642	0.12	-0.8
2,008,391	-		Sama_1642	0.12	-0.1
2,008,391	-		Sama_1642	0.12	-2.2
2,008,391	-		Sama_1642	0.12	-1.5
2,008,441	+		Sama_1642	0.20	-0.1
2,008,442	-		Sama_1642	0.20	-0.3
2,008,552	+		Sama_1642	0.38	-2.0
2,008,552	+		Sama_1642	0.38	-2.1
2,008,552	+		Sama_1642	0.38	-0.1
2,008,552	+		Sama_1642	0.38	-1.1
2,008,552	+		Sama_1642	0.38	-1.3
2,008,552	+		Sama_1642	0.38	-1.4
2,008,553	-		Sama_1642	0.38	+0.9
2,008,553	-		Sama_1642	0.38	-0.0
2,008,553	-		Sama_1642	0.38	-0.5
2,008,553	-		Sama_1642	0.38	-1.5
2,008,553	-		Sama_1642	0.38	-0.7
2,008,553	-		Sama_1642	0.38	-2.0
2,008,554	+		Sama_1642	0.39	-2.3
2,008,554	+		Sama_1642	0.39	-0.9
2,008,555	-		Sama_1642	0.39	-1.9
2,008,555	-		Sama_1642	0.39	+1.2
2,008,555	-		Sama_1642	0.39	+0.9
2,008,738	-		Sama_1642	0.69	+0.6
2,008,821	-		Sama_1642	0.82	-0.9
2,008,821	-		Sama_1642	0.82	-0.1
2,008,900	-				-0.5
2,008,900	-				-2.6
2,008,940	+				+0.9
2,008,941	-				+0.0
2,008,961	+				+0.6
2,008,961	+				-0.7
2,008,966	+				-0.9
2,008,966	+				+1.4
2,008,966	+				-1.4
2,009,027	+				-0.1
2,009,033	+				-1.7
2,009,080	+				+0.1
2,009,081	-				-2.0
2,009,081	-				-0.5
2,009,081	-				+1.9
2,009,103	+				+0.2