Strain Fitness in Shewanella amazonensis SB2B around Sama_1635

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,001,346	+		Sama_1634	0.50	-2.5
2,001,384	+		Sama_1634	0.59	-0.2
2,001,403	+		Sama_1634	0.64	-1.3
2,001,407	+		Sama_1634	0.65	+0.7
2,001,407	+		Sama_1634	0.65	+0.5
2,001,446	+		Sama_1634	0.75	-1.1
2,001,450	+		Sama_1634	0.76	+2.1
2,001,450	+		Sama_1634	0.76	-0.9
2,001,648	-				+0.9
2,001,988	+				-1.1
2,001,989	-				+0.1
2,001,991	-				+1.7
2,002,015	+				-1.2
2,002,090	+				+1.9
2,002,243	+				-2.7
2,002,243	+				-0.2
2,002,326	-				-1.8
2,002,352	-				-1.9
2,002,405	+				-1.7
2,002,782	+		Sama_1635	0.35	+3.0
2,002,832	+		Sama_1635	0.39	-0.0
2,002,845	+		Sama_1635	0.40	-0.6
2,002,992	+		Sama_1635	0.51	+0.2
2,003,030	-		Sama_1635	0.54	+0.5
2,003,038	+		Sama_1635	0.55	-0.1
2,003,335	+		Sama_1635	0.78	-0.3
2,003,434	+		Sama_1635	0.85	-1.3
2,003,442	+		Sama_1635	0.86	+0.6
2,003,442	+		Sama_1635	0.86	+0.9
2,003,446	+		Sama_1635	0.86	+0.8
2,003,447	-		Sama_1635	0.86	-1.9
2,003,449	+		Sama_1635	0.86	-1.3
2,003,449	+		Sama_1635	0.86	+0.1
2,003,509	+				-2.0
2,003,564	-				+1.1
2,003,570	-				+1.0
2,003,637	+				-1.0
2,003,637	+				+1.5
2,003,637	+				+0.8
2,003,637	+				-0.5
2,003,643	+				-1.6
2,003,643	+				-0.9
2,003,713	-				-0.9
2,003,731	+				+1.0
2,003,731	+				+0.7
2,003,731	+				-0.7
2,003,732	-				-1.1
2,003,732	-				+0.4
2,003,736	-				+1.1
2,003,817	+		Sama_1636	0.14	-0.2
2,003,817	+		Sama_1636	0.14	-2.1
2,003,832	+		Sama_1636	0.18	-0.4
2,003,832	+		Sama_1636	0.18	+0.9
2,003,848	+		Sama_1636	0.23	-0.1
2,003,852	+		Sama_1636	0.24	+0.0
2,003,866	+		Sama_1636	0.28	-0.5
2,003,867	-		Sama_1636	0.28	-1.0
2,004,020	+		Sama_1636	0.71	-0.9
2,004,065	+		Sama_1636	0.84	+1.5
2,004,107	-				-0.5
2,004,110	-				-2.0
2,004,115	+				+1.3
2,004,116	-				-0.8
2,004,271	+				-0.5
2,004,310	+		Sama_1637	0.14	-0.1
2,004,310	+		Sama_1637	0.14	-1.0
2,004,316	+		Sama_1637	0.15	-0.9
2,004,399	+		Sama_1637	0.35	-2.2
2,004,453	+		Sama_1637	0.48	+1.0
2,004,489	+		Sama_1637	0.56	+1.5
2,004,505	+		Sama_1637	0.60	+2.1
2,004,506	-		Sama_1637	0.60	-1.5
2,004,506	-		Sama_1637	0.60	+1.3