Strain Fitness in Shewanella amazonensis SB2B around Sama_1626

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,989,467	+				-0.2
1,989,512	+				-0.2
1,989,587	-				-0.1
1,989,631	-		Sama_1625	0.15	-0.8
1,989,885	-		Sama_1625	0.47	-0.5
1,989,930	+		Sama_1625	0.52	+0.4
1,990,026	+		Sama_1625	0.64	-2.8
1,990,074	-		Sama_1625	0.70	-1.5
1,990,074	-		Sama_1625	0.70	+0.7
1,990,111	+		Sama_1625	0.75	-1.1
1,990,111	+		Sama_1625	0.75	+0.4
1,990,112	-		Sama_1625	0.75	-1.2
1,990,112	-		Sama_1625	0.75	-1.4
1,990,112	-		Sama_1625	0.75	+2.4
1,990,112	-		Sama_1625	0.75	+2.3
1,990,115	+		Sama_1625	0.75	+1.9
1,990,155	+		Sama_1625	0.80	-1.3
1,990,176	+		Sama_1625	0.83	-1.8
1,990,176	+		Sama_1625	0.83	+1.0
1,990,177	-		Sama_1625	0.83	-0.0
1,990,268	+				-0.1
1,990,268	+				+1.6
1,990,268	+				-0.1
1,990,269	-				+0.2
1,990,269	-				-1.7
1,990,269	-				-1.3
1,990,269	-				+2.8
1,990,314	+				-0.5
1,990,314	+				+0.1
1,990,314	+				-0.1
1,990,315	-				+0.5
1,990,315	-				+0.3
1,990,315	-				+1.7
1,990,317	+				-1.8
1,990,317	+				-1.3
1,990,320	+				-0.2
1,990,321	-				-0.8
1,990,336	+				+0.1
1,990,336	+				-1.2
1,990,336	+				-0.5
1,990,336	+				-2.0
1,990,336	+				-2.8
1,990,337	-				-1.8
1,990,337	-				-3.4
1,990,346	+				+0.3
1,990,347	-				+0.6
1,990,347	-				+0.5
1,990,437	-				-1.8
1,990,506	+	astD	Sama_1626	0.11	-0.8
1,990,507	-	astD	Sama_1626	0.11	-0.6
1,990,507	-	astD	Sama_1626	0.11	-1.1
1,990,507	-	astD	Sama_1626	0.11	-1.3
1,990,562	+	astD	Sama_1626	0.15	-1.0
1,990,615	-	astD	Sama_1626	0.18	-2.0
1,990,723	-	astD	Sama_1626	0.25	-2.0
1,990,761	+	astD	Sama_1626	0.28	+0.2
1,990,761	+	astD	Sama_1626	0.28	-0.5
1,990,762	-	astD	Sama_1626	0.28	-0.1
1,990,853	+	astD	Sama_1626	0.34	-0.3
1,990,853	+	astD	Sama_1626	0.34	-0.9
1,990,854	-	astD	Sama_1626	0.34	-0.2
1,990,854	-	astD	Sama_1626	0.34	+0.2
1,990,995	+	astD	Sama_1626	0.44	-1.1
1,991,020	+	astD	Sama_1626	0.45	-1.3
1,991,020	+	astD	Sama_1626	0.45	-2.0
1,991,020	+	astD	Sama_1626	0.45	+0.3
1,991,020	+	astD	Sama_1626	0.45	-2.2
1,991,112	-	astD	Sama_1626	0.52	-1.2
1,991,112	-	astD	Sama_1626	0.52	-0.3
1,991,112	-	astD	Sama_1626	0.52	+1.5
1,991,112	-	astD	Sama_1626	0.52	+1.2
1,991,283	+	astD	Sama_1626	0.63	+2.3
1,991,311	+	astD	Sama_1626	0.65	-3.0
1,991,311	+	astD	Sama_1626	0.65	-0.0
1,991,312	-	astD	Sama_1626	0.65	+1.3
1,991,312	-	astD	Sama_1626	0.65	-1.3
1,991,341	+	astD	Sama_1626	0.67	-0.6
1,991,341	+	astD	Sama_1626	0.67	-0.1
1,991,341	+	astD	Sama_1626	0.67	-0.5
1,991,341	+	astD	Sama_1626	0.67	-1.3
1,991,341	+	astD	Sama_1626	0.67	-0.5
1,991,342	-	astD	Sama_1626	0.67	-0.1
1,991,342	-	astD	Sama_1626	0.67	-1.8
1,991,342	-	astD	Sama_1626	0.67	-1.1
1,991,342	-	astD	Sama_1626	0.67	-1.7
1,991,342	-	astD	Sama_1626	0.67	+1.5
1,991,342	-	astD	Sama_1626	0.67	+2.7
1,991,342	-	astD	Sama_1626	0.67	-0.5
1,991,342	-	astD	Sama_1626	0.67	-0.3
1,991,342	-	astD	Sama_1626	0.67	-1.1
1,991,343	+	astD	Sama_1626	0.67	+2.0
1,991,343	+	astD	Sama_1626	0.67	-1.8
1,991,343	+	astD	Sama_1626	0.67	-2.2
1,991,343	+	astD	Sama_1626	0.67	+2.1
1,991,344	-	astD	Sama_1626	0.67	+1.5
1,991,344	-	astD	Sama_1626	0.67	+0.8
1,991,344	-	astD	Sama_1626	0.67	+1.0
1,991,344	-	astD	Sama_1626	0.67	-0.2
1,991,374	-	astD	Sama_1626	0.69	+1.3
1,991,374	-	astD	Sama_1626	0.69	+0.4
1,991,374	-	astD	Sama_1626	0.69	-2.2
1,991,375	+	astD	Sama_1626	0.69	+1.0
1,991,375	+	astD	Sama_1626	0.69	+0.2
1,991,376	-	astD	Sama_1626	0.69	-0.6
1,991,376	-	astD	Sama_1626	0.69	+0.7
1,991,409	+	astD	Sama_1626	0.72	-1.2
1,991,419	-	astD	Sama_1626	0.72	-0.7
1,991,655	-	astD	Sama_1626	0.88	+1.5
1,991,724	+				-0.8
1,991,763	+				+0.1
1,991,853	+				+2.0
1,991,857	+				-0.8
1,991,858	-				+1.2
1,991,916	+				+0.8
1,992,141	-		Sama_1627	0.30	-0.3
1,992,236	-		Sama_1627	0.39	+1.2
1,992,236	-		Sama_1627	0.39	-2.3
1,992,267	-		Sama_1627	0.42	+0.5
1,992,318	-		Sama_1627	0.47	+1.8
1,992,437	+		Sama_1627	0.58	-0.1
1,992,437	+		Sama_1627	0.58	-1.8
1,992,437	+		Sama_1627	0.58	-1.7
1,992,444	+		Sama_1627	0.59	+0.3
1,992,526	+		Sama_1627	0.67	-0.1
1,992,526	+		Sama_1627	0.67	-0.8
1,992,530	-		Sama_1627	0.67	+0.9
1,992,543	-		Sama_1627	0.68	-1.5
1,992,566	+		Sama_1627	0.70	-1.1
1,992,578	+		Sama_1627	0.72	-0.1
1,992,579	-		Sama_1627	0.72	-0.5
1,992,596	+		Sama_1627	0.73	+0.2
1,992,597	-		Sama_1627	0.73	+0.0
1,992,798	-				-1.8