Strain Fitness in Shewanella amazonensis SB2B around Sama_1575

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,917,460	+				-1.7
1,917,501	+				-0.3
1,917,501	+				-0.5
1,917,501	+				-0.1
1,917,547	+				+2.5
1,917,578	+				-0.0
1,917,579	-				-0.5
1,917,579	-				+1.5
1,917,610	+				-1.7
1,917,610	+				-1.2
1,917,611	-				-2.5
1,917,611	-				+2.7
1,917,612	+				+0.4
1,917,612	+				-0.2
1,917,612	+				-0.5
1,917,612	+				-1.1
1,917,613	-				-0.1
1,917,613	-				-1.7
1,917,613	-				+0.5
1,917,613	-				+0.2
1,917,663	+				-1.8
1,917,664	-				-1.5
1,917,664	-				+0.8
1,917,684	-				-0.5
1,917,684	-				-0.4
1,917,795	+		Sama_1574	0.17	+0.5
1,917,796	-		Sama_1574	0.17	+1.4
1,917,808	+		Sama_1574	0.18	-0.4
1,917,808	+		Sama_1574	0.18	+0.9
1,917,808	+		Sama_1574	0.18	+0.1
1,917,942	+		Sama_1574	0.36	-1.5
1,917,942	+		Sama_1574	0.36	+2.4
1,917,943	-		Sama_1574	0.36	+0.1
1,917,943	-		Sama_1574	0.36	-2.1
1,917,943	-		Sama_1574	0.36	+0.2
1,917,943	-		Sama_1574	0.36	+0.5
1,917,958	+		Sama_1574	0.38	-0.4
1,917,970	+		Sama_1574	0.39	+1.1
1,917,971	-		Sama_1574	0.39	+1.4
1,917,973	+		Sama_1574	0.40	-1.3
1,917,973	+		Sama_1574	0.40	+0.7
1,917,974	-		Sama_1574	0.40	+1.2
1,918,088	-		Sama_1574	0.54	-0.8
1,918,103	+		Sama_1574	0.56	+3.2
1,918,104	-		Sama_1574	0.56	+0.8
1,918,111	+		Sama_1574	0.57	-0.5
1,918,111	+		Sama_1574	0.57	-0.8
1,918,112	-		Sama_1574	0.57	-0.1
1,918,112	-		Sama_1574	0.57	-0.3
1,918,112	-		Sama_1574	0.57	+1.7
1,918,112	-		Sama_1574	0.57	-0.5
1,918,112	-		Sama_1574	0.57	+2.3
1,918,215	+		Sama_1574	0.71	-1.5
1,918,215	+		Sama_1574	0.71	-0.5
1,918,216	-		Sama_1574	0.71	-1.1
1,918,232	+		Sama_1574	0.73	+1.5
1,918,232	+		Sama_1574	0.73	-0.1
1,918,240	+		Sama_1574	0.74	-0.7
1,918,240	+		Sama_1574	0.74	+5.3
1,918,240	+		Sama_1574	0.74	-2.6
1,918,241	-		Sama_1574	0.74	+1.3
1,918,252	+		Sama_1574	0.75	-1.3
1,918,313	+		Sama_1574	0.83	-1.0
1,918,313	+		Sama_1574	0.83	+1.6
1,918,333	+		Sama_1574	0.86	+0.1
1,918,335	+		Sama_1574	0.86	+0.5
1,918,336	-		Sama_1574	0.86	-2.4
1,918,344	+		Sama_1574	0.87	-1.2
1,918,351	-		Sama_1574	0.88	-0.8
1,918,509	-		Sama_1575	0.14	+2.8
1,918,509	-		Sama_1575	0.14	-1.5
1,918,519	-		Sama_1575	0.16	-1.1
1,918,519	-		Sama_1575	0.16	+0.5
1,918,519	-		Sama_1575	0.16	+2.8
1,918,519	-		Sama_1575	0.16	+1.6
1,918,548	-		Sama_1575	0.24	+0.6
1,918,612	-		Sama_1575	0.39	+1.5
1,918,612	-		Sama_1575	0.39	-1.4
1,918,612	-		Sama_1575	0.39	+0.3
1,918,612	-		Sama_1575	0.39	-0.8
1,918,613	+		Sama_1575	0.39	+1.1
1,918,613	+		Sama_1575	0.39	-1.9
1,918,613	+		Sama_1575	0.39	+0.2
1,918,613	+		Sama_1575	0.39	-1.5
1,918,613	+		Sama_1575	0.39	-1.7
1,918,613	+		Sama_1575	0.39	-0.7
1,918,614	-		Sama_1575	0.40	-0.2
1,918,614	-		Sama_1575	0.40	+0.8
1,918,614	-		Sama_1575	0.40	+0.6
1,918,614	-		Sama_1575	0.40	+0.0
1,918,614	-		Sama_1575	0.40	+0.7
1,918,614	-		Sama_1575	0.40	-0.5
1,918,614	-		Sama_1575	0.40	+1.5
1,918,614	-		Sama_1575	0.40	-1.6
1,918,614	-		Sama_1575	0.40	+0.2
1,918,723	-		Sama_1575	0.66	+0.9
1,918,757	+		Sama_1575	0.75	-0.8
1,918,757	+		Sama_1575	0.75	-1.3
1,918,758	-		Sama_1575	0.75	-1.7
1,918,758	-		Sama_1575	0.75	+1.2
1,918,818	+		Sama_1575	0.90	+2.1
1,918,819	-				-0.8
1,918,836	-				+1.5
1,918,836	-				-0.5
1,918,836	-				-0.1
1,918,836	-				-0.9
1,918,836	-				-0.7
1,918,840	-				+0.7
1,919,002	+				-0.3
1,919,002	+				+1.2
1,919,002	+				-1.5
1,919,002	+				-0.6
1,919,003	-				+2.1
1,919,003	-				-1.3
1,919,113	+				+0.6
1,919,164	+				-0.5
1,919,253	+		Sama_1576	0.17	+1.2
1,919,253	+		Sama_1576	0.17	+1.2
1,919,328	+		Sama_1576	0.25	-1.1
1,919,328	+		Sama_1576	0.25	-1.7
1,919,328	+		Sama_1576	0.25	-0.5
1,919,329	-		Sama_1576	0.25	-2.7
1,919,329	-		Sama_1576	0.25	-0.0
1,919,355	+		Sama_1576	0.28	-1.3
1,919,355	+		Sama_1576	0.28	+0.1
1,919,376	+		Sama_1576	0.31	+1.7
1,919,376	+		Sama_1576	0.31	-0.5
1,919,376	+		Sama_1576	0.31	-0.8
1,919,416	+		Sama_1576	0.35	+0.2
1,919,446	-		Sama_1576	0.38	-1.0
1,919,493	+		Sama_1576	0.43	-1.8
1,919,493	+		Sama_1576	0.43	-0.1
1,919,541	-		Sama_1576	0.48	+1.2
1,919,541	-		Sama_1576	0.48	-0.8
1,919,634	+		Sama_1576	0.58	+0.0
1,919,634	+		Sama_1576	0.58	-0.8
1,919,669	+		Sama_1576	0.62	-0.2
1,919,670	-		Sama_1576	0.62	+0.6
1,919,709	+		Sama_1576	0.67	-1.3
1,919,735	-		Sama_1576	0.69	-0.5
1,919,785	-		Sama_1576	0.75	-0.4
1,919,859	+		Sama_1576	0.83	-1.3
1,919,859	+		Sama_1576	0.83	-2.1
1,919,859	+		Sama_1576	0.83	+0.2
1,919,859	+		Sama_1576	0.83	+1.1