Strain Fitness in Shewanella amazonensis SB2B around Sama_1517

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,846,279	+				+1.8
1,846,418	+				-0.2
1,846,418	+				+0.2
1,846,418	+				+1.0
1,846,419	-				-1.5
1,846,419	-				+0.6
1,846,435	+				-0.7
1,846,435	+				+1.4
1,846,533	+		Sama_1517	0.13	+0.2
1,846,533	+		Sama_1517	0.13	-0.4
1,846,534	-		Sama_1517	0.13	+0.4
1,846,534	-		Sama_1517	0.13	-0.4
1,846,565	-		Sama_1517	0.16	+0.6
1,846,742	+		Sama_1517	0.35	+0.6
1,846,742	+		Sama_1517	0.35	+1.3
1,846,742	+		Sama_1517	0.35	+0.7
1,846,743	-		Sama_1517	0.35	-2.3
1,846,743	-		Sama_1517	0.35	-0.3
1,846,743	-		Sama_1517	0.35	-0.5
1,846,743	-		Sama_1517	0.35	+0.5
1,846,749	-		Sama_1517	0.35	+0.6
1,846,762	+		Sama_1517	0.37	-0.8
1,846,763	-		Sama_1517	0.37	+0.3
1,846,787	+		Sama_1517	0.39	-1.1
1,846,788	-		Sama_1517	0.40	-2.5
1,846,788	-		Sama_1517	0.40	-0.5
1,846,812	+		Sama_1517	0.42	-0.1
1,846,813	-		Sama_1517	0.42	+1.8
1,846,813	-		Sama_1517	0.42	-0.8
1,846,855	-		Sama_1517	0.47	-0.6
1,846,892	+		Sama_1517	0.51	-0.8
1,846,892	+		Sama_1517	0.51	+2.0
1,846,892	+		Sama_1517	0.51	-3.1
1,846,892	+		Sama_1517	0.51	+0.0
1,846,892	+		Sama_1517	0.51	+0.1
1,846,893	-		Sama_1517	0.51	-0.1
1,846,893	-		Sama_1517	0.51	-0.3
1,846,893	-		Sama_1517	0.51	+1.3
1,846,893	-		Sama_1517	0.51	+1.9
1,846,893	-		Sama_1517	0.51	-0.5
1,846,893	-		Sama_1517	0.51	-0.1
1,846,893	-		Sama_1517	0.51	-1.8
1,846,894	+		Sama_1517	0.51	-1.5
1,846,894	+		Sama_1517	0.51	+1.7
1,846,895	-		Sama_1517	0.51	+0.4
1,846,901	+		Sama_1517	0.52	-1.5
1,846,902	-		Sama_1517	0.52	-2.0
1,846,902	-		Sama_1517	0.52	+1.6
1,846,925	+		Sama_1517	0.54	-1.3
1,846,926	-		Sama_1517	0.54	-1.3
1,846,937	-		Sama_1517	0.55	-1.5
1,846,943	+		Sama_1517	0.56	-0.1
1,846,944	-		Sama_1517	0.56	+1.8
1,846,986	-		Sama_1517	0.61	+0.8
1,847,033	-		Sama_1517	0.66	-1.1
1,847,033	-		Sama_1517	0.66	-2.3
1,847,108	+		Sama_1517	0.74	-0.2
1,847,120	+		Sama_1517	0.75	+1.0
1,847,121	-		Sama_1517	0.75	+1.1
1,847,207	+		Sama_1517	0.84	+1.8
1,847,207	+		Sama_1517	0.84	+0.5
1,847,208	-		Sama_1517	0.84	-1.5
1,847,208	-		Sama_1517	0.84	+0.7
1,847,240	+		Sama_1517	0.88	+1.9
1,847,240	+		Sama_1517	0.88	+1.9
1,847,241	-		Sama_1517	0.88	-0.1
1,847,241	-		Sama_1517	0.88	+0.9
1,847,241	-		Sama_1517	0.88	-1.7
1,847,241	-		Sama_1517	0.88	+0.2
1,847,241	-		Sama_1517	0.88	+0.7
1,847,303	+				-0.1
1,847,354	+				+0.5
1,847,357	+				-0.3
1,847,386	+				+1.0
1,847,387	-				-0.1
1,847,420	-				-1.3
1,847,451	-				-0.3
1,847,594	+		Sama_1518	0.23	-0.5
1,847,595	-		Sama_1518	0.24	-1.8
1,847,710	+		Sama_1518	0.47	+1.1
1,847,822	+		Sama_1518	0.70	+0.6
1,847,901	-		Sama_1518	0.86	-1.9
1,847,901	-		Sama_1518	0.86	-2.0
1,847,902	+		Sama_1518	0.86	+1.5
1,847,902	+		Sama_1518	0.86	-1.3
1,847,902	+		Sama_1518	0.86	+1.5
1,847,902	+		Sama_1518	0.86	+1.5
1,847,902	+		Sama_1518	0.86	+0.3
1,847,903	-		Sama_1518	0.86	-0.3
1,847,903	-		Sama_1518	0.86	-0.0
1,847,903	-		Sama_1518	0.86	+1.9
1,847,968	+				+0.5
1,847,968	+				+1.7
1,847,969	-				-0.8
1,847,969	-				+0.5
1,847,997	-				+0.5
1,848,035	-				-0.5
1,848,069	+				-0.7
1,848,082	+				-1.3
1,848,083	-				-0.1
1,848,083	-				-1.9
1,848,095	-				-1.4
1,848,139	-				-0.2
1,848,147	-				-0.6
1,848,147	-				-0.9
1,848,150	+				+1.8
1,848,151	-				+1.4
1,848,151	-				+1.1
1,848,151	-				+1.2
1,848,173	+				-1.6
1,848,173	+				+0.9
1,848,173	+				+0.6
1,848,174	-				-0.6
1,848,181	+				-0.1
1,848,181	+				+0.3
1,848,182	-				-1.5
1,848,277	+				+0.5
1,848,277	+				-0.7
1,848,277	+				-0.9
1,848,277	+				+3.3
1,848,278	-				-0.3
1,848,278	-				+0.8
1,848,280	+				-0.4
1,848,281	-				+0.9
1,848,281	-				-0.5