Strain Fitness in Shewanella amazonensis SB2B around Sama_1472

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,780,111	+		Sama_1471	0.31	+0.5
1,780,111	+		Sama_1471	0.31	-1.9
1,780,111	+		Sama_1471	0.31	+1.4
1,780,112	-		Sama_1471	0.31	-2.3
1,780,179	+		Sama_1471	0.36	-1.1
1,780,179	+		Sama_1471	0.36	+0.6
1,780,180	-		Sama_1471	0.36	-1.2
1,780,211	+		Sama_1471	0.39	+0.7
1,780,243	-		Sama_1471	0.42	-0.3
1,780,341	+		Sama_1471	0.50	+1.2
1,780,646	+		Sama_1471	0.75	+0.1
1,780,651	-		Sama_1471	0.76	-0.8
1,780,750	+		Sama_1471	0.84	-0.3
1,780,803	+		Sama_1471	0.88	-0.3
1,780,803	+		Sama_1471	0.88	-1.1
1,780,803	+		Sama_1471	0.88	-0.1
1,780,804	-		Sama_1471	0.88	-0.1
1,780,804	-		Sama_1471	0.88	-1.1
1,780,804	-		Sama_1471	0.88	-2.1
1,780,804	-		Sama_1471	0.88	-0.5
1,780,804	-		Sama_1471	0.88	-0.3
1,780,808	+		Sama_1471	0.89	+1.3
1,780,808	+		Sama_1471	0.89	-2.2
1,780,809	-		Sama_1471	0.89	-1.5
1,780,918	+				-0.8
1,780,951	+				-1.2
1,780,952	-				-0.5
1,780,957	+				-0.8
1,780,957	+				-0.9
1,780,965	-				-0.5
1,780,980	+				+0.5
1,781,013	+				-0.6
1,781,013	+				+1.4
1,781,014	-				-1.4
1,781,107	+		Sama_1472	0.13	-2.3
1,781,107	+		Sama_1472	0.13	-0.7
1,781,107	+		Sama_1472	0.13	+1.2
1,781,107	+		Sama_1472	0.13	-0.8
1,781,108	-		Sama_1472	0.13	-0.5
1,781,230	+		Sama_1472	0.23	-0.1
1,781,258	+		Sama_1472	0.25	-1.6
1,781,258	+		Sama_1472	0.25	+3.1
1,781,258	+		Sama_1472	0.25	-1.3
1,781,346	-		Sama_1472	0.32	-0.3
1,781,584	+		Sama_1472	0.51	-0.8
1,781,584	+		Sama_1472	0.51	-0.1
1,781,656	+		Sama_1472	0.57	-2.6
1,781,686	-		Sama_1472	0.59	-2.6
1,781,686	-		Sama_1472	0.59	+3.3
1,781,753	+		Sama_1472	0.65	+0.7
1,781,754	-		Sama_1472	0.65	+0.2
1,781,754	-		Sama_1472	0.65	-2.1
1,781,760	+		Sama_1472	0.65	+0.5
1,781,761	-		Sama_1472	0.65	+1.0
1,781,817	+		Sama_1472	0.70	-0.9
1,781,817	+		Sama_1472	0.70	-2.1
1,781,817	+		Sama_1472	0.70	+0.8
1,781,817	+		Sama_1472	0.70	-2.3
1,781,817	+		Sama_1472	0.70	-0.5
1,781,817	+		Sama_1472	0.70	+0.5
1,781,817	+		Sama_1472	0.70	-0.8
1,781,817	+		Sama_1472	0.70	-0.9
1,781,817	+		Sama_1472	0.70	-2.3
1,781,818	-		Sama_1472	0.70	-1.6
1,781,862	+		Sama_1472	0.74	-1.6
1,781,862	+		Sama_1472	0.74	-2.2
1,781,863	-		Sama_1472	0.74	-1.3
1,781,875	+		Sama_1472	0.75	+1.4
1,781,875	+		Sama_1472	0.75	-0.2
1,781,875	+		Sama_1472	0.75	-1.3
1,781,902	+		Sama_1472	0.77	+1.1
1,781,913	+		Sama_1472	0.78	-0.1
1,782,041	-		Sama_1472	0.88	+1.5
1,782,109	+				-0.6
1,782,110	-				-0.9
1,782,123	+				+1.2
1,782,169	+				-0.1
1,782,217	+				-1.1
1,782,217	+				-0.6
1,782,282	-		Sama_1473	0.14	-0.3
1,782,299	+		Sama_1473	0.16	+0.2
1,782,299	+		Sama_1473	0.16	-1.2
1,782,309	+		Sama_1473	0.17	-1.6
1,782,310	-		Sama_1473	0.18	-2.1
1,782,310	-		Sama_1473	0.18	+0.6
1,782,310	-		Sama_1473	0.18	+0.3
1,782,310	-		Sama_1473	0.18	-2.1
1,782,320	+		Sama_1473	0.19	-1.6
1,782,328	+		Sama_1473	0.20	+1.3
1,782,329	-		Sama_1473	0.20	-2.2
1,782,329	-		Sama_1473	0.20	+0.5
1,782,343	-		Sama_1473	0.22	-2.8
1,782,343	-		Sama_1473	0.22	+1.9
1,782,343	-		Sama_1473	0.22	-0.3
1,782,343	-		Sama_1473	0.22	-1.1
1,782,343	-		Sama_1473	0.22	+0.3
1,782,394	+		Sama_1473	0.28	+1.9
1,782,394	+		Sama_1473	0.28	+0.4
1,782,395	-		Sama_1473	0.28	+0.4
1,782,402	-		Sama_1473	0.29	+0.3
1,782,403	+		Sama_1473	0.29	-0.1
1,782,403	+		Sama_1473	0.29	+0.7
1,782,404	-		Sama_1473	0.29	-0.2
1,782,404	-		Sama_1473	0.29	-0.5
1,782,423	+		Sama_1473	0.32	+0.3
1,782,423	+		Sama_1473	0.32	+3.1
1,782,424	-		Sama_1473	0.32	+0.2
1,782,424	-		Sama_1473	0.32	+0.9
1,782,426	-		Sama_1473	0.32	-0.5
1,782,490	+		Sama_1473	0.40	-0.7
1,782,491	-		Sama_1473	0.40	+0.8
1,782,491	-		Sama_1473	0.40	+0.5
1,782,491	-		Sama_1473	0.40	+1.7
1,782,707	+		Sama_1473	0.67	-2.3
1,782,708	-		Sama_1473	0.67	-0.2
1,782,740	-		Sama_1473	0.71	+0.4
1,782,750	+		Sama_1473	0.72	+0.5
1,782,751	-		Sama_1473	0.72	-1.1
1,782,751	-		Sama_1473	0.72	-0.1
1,782,751	-		Sama_1473	0.72	-1.7
1,782,779	-		Sama_1473	0.76	-0.4
1,782,810	-		Sama_1473	0.80	+1.3
1,782,842	+		Sama_1473	0.84	+2.0
1,782,842	+		Sama_1473	0.84	-0.1
1,782,842	+		Sama_1473	0.84	+0.1
1,782,856	+		Sama_1473	0.85	+2.1
1,782,856	+		Sama_1473	0.85	+1.4
1,782,856	+		Sama_1473	0.85	+0.7
1,782,857	-		Sama_1473	0.85	+0.5
1,782,857	-		Sama_1473	0.85	-1.1
1,782,925	+				-0.1
1,782,926	-				+1.2
1,782,930	+				-1.1
1,782,930	+				-0.4
1,782,930	+				+0.4
1,782,931	-				-0.8
1,782,931	-				-1.5
1,782,931	-				-0.1
1,782,931	-				+0.3
1,782,975	+				+0.3
1,782,975	+				-1.6
1,783,031	+				+1.1
1,783,031	+				+0.2
1,783,032	-				+1.5
1,783,032	-				+0.7
1,783,039	-				-0.1
1,783,103	+				-1.8
1,783,123	-				+1.4
1,783,155	-				+1.1
1,783,160	+				-1.9
1,783,168	+				-0.5
1,783,168	+				-0.1
1,783,169	-				-1.5
1,783,169	-				-0.8
1,783,169	-				-0.5
1,783,169	-				+2.3
1,783,169	-				-2.5