Strain Fitness in Shewanella amazonensis SB2B around Sama_1408

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,708,576	+		Sama_1406	0.74	-1.8
1,708,576	+		Sama_1406	0.74	+1.1
1,708,576	+		Sama_1406	0.74	-1.6
1,708,576	+		Sama_1406	0.74	-1.0
1,708,576	+		Sama_1406	0.74	-2.0
1,708,595	+		Sama_1406	0.76	-0.4
1,708,595	+		Sama_1406	0.76	+2.0
1,708,596	-		Sama_1406	0.76	+1.0
1,708,596	-		Sama_1406	0.76	-0.7
1,708,597	+		Sama_1406	0.77	-2.1
1,708,598	-		Sama_1406	0.77	+0.4
1,708,668	+		Sama_1406	0.84	-2.1
1,708,669	-		Sama_1406	0.84	-0.4
1,708,669	-		Sama_1406	0.84	-0.9
1,708,770	+				-2.7
1,708,771	-				+2.0
1,708,771	-				+0.1
1,708,771	-				+1.0
1,708,771	-				-0.2
1,708,781	+				-0.1
1,708,781	+				-1.4
1,708,814	+				+0.6
1,708,815	-				+0.7
1,708,815	-				-1.1
1,708,988	-		Sama_1407	0.33	-2.4
1,708,991	-		Sama_1407	0.34	+1.6
1,709,019	-		Sama_1407	0.39	+1.6
1,709,061	+		Sama_1407	0.48	-0.3
1,709,062	-		Sama_1407	0.48	-1.2
1,709,184	-		Sama_1407	0.72	+1.6
1,709,184	-		Sama_1407	0.72	+0.1
1,709,313	+				-1.2
1,709,314	-				-0.9
1,709,348	+				+2.7
1,709,348	+				+0.5
1,709,355	+				+0.0
1,709,356	-				+0.6
1,709,395	+				-0.4
1,709,395	+				+2.7
1,709,395	+				-2.6
1,709,395	+				+0.1
1,709,395	+				+0.2
1,709,395	+				-1.0
1,709,395	+				+0.9
1,709,396	-				+0.8
1,709,396	-				-2.7
1,709,396	-				-1.6
1,709,396	-				-1.7
1,709,418	-				+2.9
1,709,429	-				+3.4
1,709,430	+				-1.6
1,709,430	+				+0.0
1,709,467	+				+0.8
1,709,467	+				-0.7
1,709,474	+				+2.4
1,709,579	+				+0.3
1,711,607	+				+0.5
1,711,607	+				+5.1
1,711,681	+				+1.0
1,711,803	+				-2.1
1,711,803	+				-0.8
1,711,993	+				+6.2
1,712,055	+		Sama_1409	0.12	+7.3
1,712,263	+		Sama_1409	0.25	-0.0
1,712,263	+		Sama_1409	0.25	+4.4
1,712,340	+		Sama_1409	0.29	-0.7
1,712,340	+		Sama_1409	0.29	-1.7
1,712,410	+		Sama_1409	0.34	+4.6
1,712,410	+		Sama_1409	0.34	+3.9
1,712,775	+		Sama_1409	0.56	-0.2
1,712,775	+		Sama_1409	0.56	-0.2