Strain Fitness in Shewanella amazonensis SB2B around Sama_1330

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,618,279	+		Sama_1329	0.21	+1.5
1,618,280	-		Sama_1329	0.21	-0.4
1,618,314	+		Sama_1329	0.24	-1.7
1,618,374	-		Sama_1329	0.29	-1.2
1,618,374	-		Sama_1329	0.29	-0.4
1,618,395	+		Sama_1329	0.31	-0.0
1,618,396	-		Sama_1329	0.31	+3.0
1,618,401	+		Sama_1329	0.31	+1.8
1,618,401	+		Sama_1329	0.31	-0.1
1,618,401	+		Sama_1329	0.31	+1.1
1,618,402	-		Sama_1329	0.32	-2.5
1,618,402	-		Sama_1329	0.32	-0.9
1,618,402	-		Sama_1329	0.32	+0.7
1,618,413	+		Sama_1329	0.32	+0.0
1,618,421	-		Sama_1329	0.33	+0.5
1,618,471	+		Sama_1329	0.37	-1.5
1,618,472	-		Sama_1329	0.37	-0.4
1,618,522	+		Sama_1329	0.42	+0.6
1,618,522	+		Sama_1329	0.42	+1.2
1,618,541	+		Sama_1329	0.43	+1.2
1,618,541	+		Sama_1329	0.43	+2.0
1,618,603	+		Sama_1329	0.49	+0.6
1,618,603	+		Sama_1329	0.49	-1.4
1,618,603	+		Sama_1329	0.49	+0.1
1,618,603	+		Sama_1329	0.49	+0.3
1,618,604	-		Sama_1329	0.49	+0.1
1,618,604	-		Sama_1329	0.49	-0.1
1,618,604	-		Sama_1329	0.49	-1.7
1,618,604	-		Sama_1329	0.49	+0.1
1,618,606	+		Sama_1329	0.49	-1.8
1,618,607	-		Sama_1329	0.49	+0.1
1,618,607	-		Sama_1329	0.49	-0.8
1,618,900	+		Sama_1329	0.74	+1.6
1,618,900	+		Sama_1329	0.74	+1.5
1,618,900	+		Sama_1329	0.74	+0.0
1,618,900	+		Sama_1329	0.74	+0.1
1,618,901	-		Sama_1329	0.74	-1.9
1,618,901	-		Sama_1329	0.74	-0.9
1,618,949	-		Sama_1329	0.78	-2.1
1,619,014	+		Sama_1329	0.83	+0.6
1,619,041	+		Sama_1329	0.85	-1.7
1,619,042	-		Sama_1329	0.86	+2.0
1,619,213	+				-0.4
1,619,332	-				+0.6
1,619,337	-				-0.8
1,619,337	-				+2.0
1,619,371	-				-0.9
1,619,440	-				-1.7
1,619,473	+				+2.0
1,619,474	-				+1.1
1,619,474	-				+0.1
1,619,474	-				-0.7
1,619,579	-		Sama_1330	0.11	-0.4
1,619,588	+		Sama_1330	0.11	+0.8
1,619,589	-		Sama_1330	0.11	-0.4
1,619,589	-		Sama_1330	0.11	+0.1
1,619,589	-		Sama_1330	0.11	+1.5
1,619,589	-		Sama_1330	0.11	+1.0
1,619,604	+		Sama_1330	0.11	+1.1
1,619,618	-		Sama_1330	0.12	+1.3
1,619,618	-		Sama_1330	0.12	+2.1
1,619,621	+		Sama_1330	0.12	+0.9
1,619,646	+		Sama_1330	0.13	+2.5
1,619,646	+		Sama_1330	0.13	+1.3
1,619,647	-		Sama_1330	0.13	-1.0
1,619,647	-		Sama_1330	0.13	+0.6
1,619,650	+		Sama_1330	0.13	+2.8
1,619,651	-		Sama_1330	0.13	+3.2
1,619,651	-		Sama_1330	0.13	+2.3
1,619,651	-		Sama_1330	0.13	+0.1
1,619,651	-		Sama_1330	0.13	-1.2
1,619,651	-		Sama_1330	0.13	+2.0
1,619,651	-		Sama_1330	0.13	+2.0
1,619,744	+		Sama_1330	0.15	+2.2
1,619,745	-		Sama_1330	0.15	-0.2
1,619,745	-		Sama_1330	0.15	-0.1
1,619,745	-		Sama_1330	0.15	+2.6
1,619,770	-		Sama_1330	0.16	-3.3
1,619,838	+		Sama_1330	0.18	-1.2
1,619,838	+		Sama_1330	0.18	+1.6
1,619,930	+		Sama_1330	0.21	+0.9
1,619,931	-		Sama_1330	0.21	+0.9
1,619,931	-		Sama_1330	0.21	+1.1
1,619,931	-		Sama_1330	0.21	-0.7
1,619,936	+		Sama_1330	0.21	-1.5
1,619,936	+		Sama_1330	0.21	+0.1
1,619,936	+		Sama_1330	0.21	+2.2
1,619,936	+		Sama_1330	0.21	-0.4
1,619,937	-		Sama_1330	0.21	-0.8
1,619,937	-		Sama_1330	0.21	-2.2
1,619,937	-		Sama_1330	0.21	+2.0
1,619,937	-		Sama_1330	0.21	+2.3
1,619,937	-		Sama_1330	0.21	+0.6
1,619,937	-		Sama_1330	0.21	+1.9
1,620,014	-		Sama_1330	0.23	+1.2
1,620,014	-		Sama_1330	0.23	-1.9
1,620,055	+		Sama_1330	0.24	-0.5
1,620,055	+		Sama_1330	0.24	+0.6
1,620,056	-		Sama_1330	0.24	+0.8
1,620,056	-		Sama_1330	0.24	+3.4
1,620,056	-		Sama_1330	0.24	-2.4
1,620,066	+		Sama_1330	0.25	+1.2
1,620,082	-		Sama_1330	0.25	-1.7
1,620,095	+		Sama_1330	0.25	-1.5
1,620,227	+		Sama_1330	0.29	-1.5
1,620,227	+		Sama_1330	0.29	+1.3
1,620,227	+		Sama_1330	0.29	+1.4
1,620,227	+		Sama_1330	0.29	+1.9
1,620,227	+		Sama_1330	0.29	+2.2
1,620,228	-		Sama_1330	0.29	-0.3
1,620,230	+		Sama_1330	0.29	+0.6
1,620,230	+		Sama_1330	0.29	-0.5
1,620,230	+		Sama_1330	0.29	-0.7
1,620,230	+		Sama_1330	0.29	+0.9
1,620,230	+		Sama_1330	0.29	+2.6
1,620,230	+		Sama_1330	0.29	+0.8
1,620,230	+		Sama_1330	0.29	+0.3
1,620,230	+		Sama_1330	0.29	+0.9
1,620,231	-		Sama_1330	0.29	+2.1
1,620,231	-		Sama_1330	0.29	-0.5
1,620,231	-		Sama_1330	0.29	+0.2
1,620,231	-		Sama_1330	0.29	+1.0
1,620,231	-		Sama_1330	0.29	+0.3
1,620,231	-		Sama_1330	0.29	+0.8
1,620,231	-		Sama_1330	0.29	-2.4
1,620,231	-		Sama_1330	0.29	-0.1
1,620,231	-		Sama_1330	0.29	+0.6
1,620,231	-		Sama_1330	0.29	+0.7
1,620,231	-		Sama_1330	0.29	+0.7
1,620,231	-		Sama_1330	0.29	+0.4
1,620,444	+		Sama_1330	0.36	-0.2
1,620,445	-		Sama_1330	0.36	-0.8
1,620,445	-		Sama_1330	0.36	+0.3
1,620,514	-		Sama_1330	0.38	-0.4
1,620,540	+		Sama_1330	0.38	+1.1
1,620,635	-		Sama_1330	0.41	-0.3
1,620,706	+		Sama_1330	0.43	+0.5
1,620,706	+		Sama_1330	0.43	+0.9
1,620,707	-		Sama_1330	0.43	+1.9
1,620,707	-		Sama_1330	0.43	-0.2
1,620,707	-		Sama_1330	0.43	-2.4
1,620,768	+		Sama_1330	0.45	+2.2
1,620,822	+		Sama_1330	0.46	+1.6
1,620,823	-		Sama_1330	0.46	-0.8
1,620,954	-		Sama_1330	0.50	-0.9
1,620,954	-		Sama_1330	0.50	-0.9
1,621,083	+		Sama_1330	0.54	+1.6
1,621,083	+		Sama_1330	0.54	+2.2
1,621,099	+		Sama_1330	0.54	+0.3
1,621,109	+		Sama_1330	0.55	+0.9
1,621,109	+		Sama_1330	0.55	+0.6
1,621,109	+		Sama_1330	0.55	+1.1
1,621,109	+		Sama_1330	0.55	-1.5
1,621,109	+		Sama_1330	0.55	+2.6
1,621,109	+		Sama_1330	0.55	+2.1
1,621,109	+		Sama_1330	0.55	+1.5
1,621,110	-		Sama_1330	0.55	-1.9
1,621,110	-		Sama_1330	0.55	+2.3
1,621,110	-		Sama_1330	0.55	+0.1
1,621,110	-		Sama_1330	0.55	-1.8
1,621,110	-		Sama_1330	0.55	+0.5
1,621,110	-		Sama_1330	0.55	+0.4
1,621,190	+		Sama_1330	0.57	-0.0
1,621,191	-		Sama_1330	0.57	-2.3
1,621,191	-		Sama_1330	0.57	-1.0
1,621,217	-		Sama_1330	0.58	-1.2
1,621,383	+		Sama_1330	0.63	-0.8
1,621,462	+		Sama_1330	0.65	-1.8
1,621,462	+		Sama_1330	0.65	+0.1
1,621,463	-		Sama_1330	0.65	-1.4
1,621,463	-		Sama_1330	0.65	+1.0
1,621,584	+		Sama_1330	0.68	+0.3
1,621,585	-		Sama_1330	0.68	-0.9
1,621,597	+		Sama_1330	0.69	+1.2
1,621,597	+		Sama_1330	0.69	+0.2
1,621,597	+		Sama_1330	0.69	+1.6
1,621,598	-		Sama_1330	0.69	-0.2
1,621,598	-		Sama_1330	0.69	-0.5
1,621,598	-		Sama_1330	0.69	-2.3
1,621,629	+		Sama_1330	0.70	+0.5
1,621,629	+		Sama_1330	0.70	+0.4
1,621,630	-		Sama_1330	0.70	+2.2
1,621,630	-		Sama_1330	0.70	+2.4
1,621,665	-		Sama_1330	0.71	-1.7
1,621,671	+		Sama_1330	0.71	-2.4
1,621,671	+		Sama_1330	0.71	+2.7
1,621,671	+		Sama_1330	0.71	+1.5
1,621,671	+		Sama_1330	0.71	+0.2
1,621,672	-		Sama_1330	0.71	-0.9
1,621,703	+		Sama_1330	0.72	+1.9
1,621,704	-		Sama_1330	0.72	-0.4
1,621,841	+		Sama_1330	0.76	+0.2
1,621,884	-		Sama_1330	0.77	-0.8
1,622,119	+		Sama_1330	0.84	+2.7
1,622,119	+		Sama_1330	0.84	+0.2
1,622,119	+		Sama_1330	0.84	+2.6
1,622,120	-		Sama_1330	0.84	-1.9
1,622,120	-		Sama_1330	0.84	+1.5
1,622,120	-		Sama_1330	0.84	+0.1
1,622,155	-		Sama_1330	0.85	+1.5
1,622,195	+		Sama_1330	0.86	-0.3
1,622,196	-		Sama_1330	0.86	+3.1
1,622,196	-		Sama_1330	0.86	+2.8
1,622,196	-		Sama_1330	0.86	-1.9
1,622,216	+		Sama_1330	0.87	-0.9
1,622,276	-		Sama_1330	0.88	+0.4
1,622,280	+		Sama_1330	0.88	+0.3
1,622,280	+		Sama_1330	0.88	+0.2
1,622,280	+		Sama_1330	0.88	+1.9
1,622,280	+		Sama_1330	0.88	+2.9
1,622,280	+		Sama_1330	0.88	+1.1
1,622,280	+		Sama_1330	0.88	-0.4
1,622,281	-		Sama_1330	0.88	+0.4
1,622,281	-		Sama_1330	0.88	-1.7
1,622,432	+				-1.7
1,622,432	+				-1.7
1,622,432	+				+1.8
1,622,433	-				+2.8
1,622,466	+				-0.7
1,622,530	-				+1.4
1,622,542	+				+2.6
1,622,543	-				+2.0
1,622,668	-				-1.2
1,622,727	-				-0.1
1,622,727	-				+1.2
1,622,740	-				+0.6
1,622,740	-				-0.6
1,622,790	+				-2.8
1,622,790	+				+0.9
1,622,835	+		Sama_1331	0.15	+0.1
1,622,836	-		Sama_1331	0.15	-3.1
1,622,836	-		Sama_1331	0.15	+1.2
1,622,836	-		Sama_1331	0.15	-0.4
1,622,850	+		Sama_1331	0.18	-0.2
1,622,860	+		Sama_1331	0.19	-0.0
1,622,950	+		Sama_1331	0.35	-1.5
1,622,950	+		Sama_1331	0.35	-0.2
1,622,951	-		Sama_1331	0.35	-0.7
1,622,951	-		Sama_1331	0.35	-0.9
1,623,073	+		Sama_1331	0.56	-1.2
1,623,073	+		Sama_1331	0.56	-0.9
1,623,074	-		Sama_1331	0.56	+2.3
1,623,074	-		Sama_1331	0.56	+0.1
1,623,074	-		Sama_1331	0.56	+0.9
1,623,074	-		Sama_1331	0.56	-0.4
1,623,074	-		Sama_1331	0.56	+2.5
1,623,074	-		Sama_1331	0.56	-2.8
1,623,074	-		Sama_1331	0.56	+2.4
1,623,105	+		Sama_1331	0.61	-1.5
1,623,153	+		Sama_1331	0.70	+0.1
1,623,154	-		Sama_1331	0.70	+0.2
1,623,154	-		Sama_1331	0.70	-0.1
1,623,163	-		Sama_1331	0.71	-2.1
1,623,163	-		Sama_1331	0.71	-0.7
1,623,163	-		Sama_1331	0.71	-0.9
1,623,163	-		Sama_1331	0.71	+1.3
1,623,221	+		Sama_1331	0.81	+0.6
1,623,222	-		Sama_1331	0.81	-2.9
1,623,222	-		Sama_1331	0.81	-1.3
1,623,267	+		Sama_1331	0.89	-1.1
1,623,267	+		Sama_1331	0.89	-1.4
1,623,267	+		Sama_1331	0.89	+1.7
1,623,268	-		Sama_1331	0.89	-1.4
1,623,268	-		Sama_1331	0.89	-0.2
1,623,268	-		Sama_1331	0.89	-1.8
1,623,271	+				-2.3
1,623,271	+				-0.8
1,623,301	+				-1.5
1,623,301	+				-1.0
1,623,337	+				-1.5
1,623,337	+				-1.5
1,623,337	+				-0.7
1,623,341	+				-0.3
1,623,382	+				-2.8
1,623,382	+				-1.1
1,623,392	+				+0.6