Strain Fitness in Shewanella amazonensis SB2B around Sama_1280

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,568,075	+				-2.6
1,568,095	+				+0.6
1,568,095	+				-1.2
1,568,095	+				-1.7
1,568,101	-				+0.1
1,568,121	-				-0.2
1,568,121	-				+1.1
1,568,121	-				-1.2
1,568,149	+				+1.7
1,568,150	-				+1.5
1,568,150	-				-1.3
1,568,492	-		Sama_1279	0.42	-0.2
1,568,526	-		Sama_1279	0.48	-0.7
1,568,567	+		Sama_1279	0.54	-0.1
1,568,636	+		Sama_1279	0.65	-0.9
1,568,643	+		Sama_1279	0.66	+0.5
1,568,644	-		Sama_1279	0.66	-0.3
1,568,644	-		Sama_1279	0.66	+1.0
1,568,644	-		Sama_1279	0.66	-2.7
1,568,647	+		Sama_1279	0.67	-1.9
1,568,647	+		Sama_1279	0.67	-0.3
1,568,647	+		Sama_1279	0.67	-0.2
1,568,648	-		Sama_1279	0.67	+0.7
1,568,658	+		Sama_1279	0.68	+1.1
1,568,658	+		Sama_1279	0.68	+1.2
1,568,659	-		Sama_1279	0.69	+0.7
1,568,659	-		Sama_1279	0.69	+0.5
1,568,659	-		Sama_1279	0.69	-2.8
1,568,858	+				+0.7
1,568,858	+				-2.0
1,568,859	-				-0.9
1,568,859	-				-1.3
1,568,859	-				+1.5
1,568,859	-				+0.1
1,568,859	-				-2.7
1,568,859	-				-0.9
1,568,904	+				-0.6
1,568,984	-				+1.7
1,569,012	-				+0.3
1,569,012	-				-0.7
1,569,012	-				+1.6
1,569,024	-				-2.3
1,569,039	-				-1.2
1,569,132	+		Sama_1280	0.10	-1.3
1,569,199	+		Sama_1280	0.15	-1.0
1,569,292	-		Sama_1280	0.22	+0.2
1,569,335	+		Sama_1280	0.25	-1.2
1,569,335	+		Sama_1280	0.25	+0.8
1,569,335	+		Sama_1280	0.25	+0.1
1,569,401	+		Sama_1280	0.29	-0.9
1,569,401	+		Sama_1280	0.29	-0.3
1,569,402	-		Sama_1280	0.29	+0.1
1,569,414	-		Sama_1280	0.30	+0.2
1,569,414	-		Sama_1280	0.30	+0.1
1,569,425	+		Sama_1280	0.31	+1.2
1,569,425	+		Sama_1280	0.31	-0.3
1,569,446	+		Sama_1280	0.32	-0.5
1,569,446	+		Sama_1280	0.32	-0.5
1,569,447	-		Sama_1280	0.32	-0.1
1,569,488	-		Sama_1280	0.35	+1.2
1,569,488	-		Sama_1280	0.35	+1.0
1,569,488	-		Sama_1280	0.35	-1.2
1,569,572	+		Sama_1280	0.41	+1.2
1,569,573	-		Sama_1280	0.41	+1.7
1,569,607	+		Sama_1280	0.44	-3.4
1,569,833	+		Sama_1280	0.59	+0.1
1,569,833	+		Sama_1280	0.59	-0.7
1,569,834	-		Sama_1280	0.59	+0.1
1,569,834	-		Sama_1280	0.59	-1.7
1,569,834	-		Sama_1280	0.59	-2.0
1,569,834	-		Sama_1280	0.59	+0.1
1,569,911	-		Sama_1280	0.65	-0.9
1,569,911	-		Sama_1280	0.65	+0.1
1,569,913	+		Sama_1280	0.65	-2.3
1,569,990	-		Sama_1280	0.70	+0.3
1,570,046	+		Sama_1280	0.74	-1.5
1,570,063	+		Sama_1280	0.75	+0.4
1,570,115	+		Sama_1280	0.79	-0.3
1,570,126	+		Sama_1280	0.80	+3.4
1,570,126	+		Sama_1280	0.80	+0.3
1,570,127	-		Sama_1280	0.80	-0.2
1,570,127	-		Sama_1280	0.80	+0.2
1,570,127	-		Sama_1280	0.80	-1.3
1,570,152	-		Sama_1280	0.82	-1.4
1,570,189	+		Sama_1280	0.84	-0.9
1,570,191	+		Sama_1280	0.84	-0.9
1,570,192	-		Sama_1280	0.84	+1.2
1,570,255	+		Sama_1280	0.89	-1.8
1,570,256	-		Sama_1280	0.89	+1.2
1,570,256	-		Sama_1280	0.89	+0.2
1,570,282	+				-0.2
1,570,282	+				+0.1
1,570,282	+				-0.0
1,570,282	+				+0.8
1,570,282	+				-0.3
1,570,282	+				+0.7
1,570,282	+				+0.3
1,570,282	+				-1.5
1,570,283	-				-2.0
1,570,283	-				-0.9
1,570,283	-				-3.1
1,570,283	-				-0.3
1,570,283	-				-1.8
1,570,283	-				-1.8
1,570,283	-				-2.3
1,570,331	+				-1.7
1,570,401	+				-0.1
1,570,402	-				+0.1
1,570,440	+				+1.3
1,570,440	+				-0.9
1,570,440	+				+0.6
1,570,452	-				-0.1
1,570,538	-				-1.2
1,570,559	+				-2.7
1,570,559	+				-1.8
1,570,559	+				-0.8
1,570,559	+				+0.5
1,570,569	-				+0.5
1,570,689	+		Sama_1281	0.22	+0.2
1,570,759	-		Sama_1281	0.31	+0.8
1,570,759	-		Sama_1281	0.31	-1.2
1,570,759	-		Sama_1281	0.31	-0.6
1,570,789	+		Sama_1281	0.36	+1.3
1,570,789	+		Sama_1281	0.36	-0.7
1,570,790	-		Sama_1281	0.36	+2.8
1,570,790	-		Sama_1281	0.36	+1.4
1,570,790	-		Sama_1281	0.36	+0.3
1,570,790	-		Sama_1281	0.36	+0.7
1,570,790	-		Sama_1281	0.36	-1.5
1,570,827	-		Sama_1281	0.41	+1.7
1,570,955	-		Sama_1281	0.59	+0.3
1,570,990	+		Sama_1281	0.64	-0.9
1,570,990	+		Sama_1281	0.64	-1.6
1,570,990	+		Sama_1281	0.64	-0.9
1,570,990	+		Sama_1281	0.64	+1.7
1,570,990	+		Sama_1281	0.64	-1.8
1,570,991	-		Sama_1281	0.64	-0.3
1,571,027	+		Sama_1281	0.69	-1.3
1,571,028	-		Sama_1281	0.69	+1.4
1,571,028	-		Sama_1281	0.69	-0.3
1,571,108	+		Sama_1281	0.80	-2.4
1,571,108	+		Sama_1281	0.80	+1.7
1,571,108	+		Sama_1281	0.80	-0.3
1,571,108	+		Sama_1281	0.80	-3.1
1,571,118	+		Sama_1281	0.82	-0.9
1,571,118	+		Sama_1281	0.82	-2.2
1,571,119	-		Sama_1281	0.82	+2.7
1,571,127	+		Sama_1281	0.83	+0.4
1,571,187	+				-1.3
1,571,187	+				-1.3
1,571,188	-				+1.7
1,571,386	+				-0.2
1,571,386	+				-0.4
1,571,387	-				-0.7