Strain Fitness in Shewanella amazonensis SB2B around Sama_1276

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,564,951	-		Sama_1275	0.57	-1.1
1,564,953	+		Sama_1275	0.57	-1.0
1,564,953	+		Sama_1275	0.57	+1.2
1,564,954	-		Sama_1275	0.57	-2.1
1,564,954	-		Sama_1275	0.57	-1.5
1,564,974	+		Sama_1275	0.58	+1.5
1,564,975	-		Sama_1275	0.58	-3.3
1,564,986	+		Sama_1275	0.58	+0.7
1,565,023	+		Sama_1275	0.60	-1.8
1,565,024	-		Sama_1275	0.60	-0.5
1,565,122	+		Sama_1275	0.65	-0.6
1,565,212	+		Sama_1275	0.69	+0.3
1,565,212	+		Sama_1275	0.69	+0.7
1,565,213	-		Sama_1275	0.69	-0.1
1,565,216	+		Sama_1275	0.69	+1.7
1,565,216	+		Sama_1275	0.69	+1.6
1,565,216	+		Sama_1275	0.69	-1.9
1,565,216	+		Sama_1275	0.69	+1.0
1,565,217	-		Sama_1275	0.69	-0.2
1,565,217	-		Sama_1275	0.69	-0.6
1,565,217	-		Sama_1275	0.69	+0.2
1,565,245	+		Sama_1275	0.71	+0.3
1,565,245	+		Sama_1275	0.71	+0.5
1,565,246	-		Sama_1275	0.71	+1.9
1,565,246	-		Sama_1275	0.71	-0.8
1,565,246	-		Sama_1275	0.71	-0.9
1,565,246	-		Sama_1275	0.71	-1.5
1,565,250	+		Sama_1275	0.71	+1.6
1,565,266	+		Sama_1275	0.72	-1.1
1,565,266	+		Sama_1275	0.72	+1.7
1,565,267	-		Sama_1275	0.72	+0.1
1,565,267	-		Sama_1275	0.72	+0.7
1,565,267	-		Sama_1275	0.72	-2.7
1,565,267	-		Sama_1275	0.72	-1.6
1,565,368	+		Sama_1275	0.76	-1.1
1,565,368	+		Sama_1275	0.76	-0.3
1,565,368	+		Sama_1275	0.76	+1.7
1,565,369	-		Sama_1275	0.77	-1.7
1,565,373	+		Sama_1275	0.77	-0.1
1,565,374	-		Sama_1275	0.77	-1.0
1,565,374	-		Sama_1275	0.77	+0.4
1,565,374	-		Sama_1275	0.77	+0.8
1,565,374	-		Sama_1275	0.77	-0.4
1,565,374	-		Sama_1275	0.77	+0.1
1,565,436	-		Sama_1275	0.80	-0.3
1,565,436	-		Sama_1275	0.80	+0.9
1,565,436	-		Sama_1275	0.80	+2.1
1,565,458	+		Sama_1275	0.81	+0.9
1,565,461	+		Sama_1275	0.81	-2.0
1,565,461	+		Sama_1275	0.81	-1.7
1,565,462	-		Sama_1275	0.81	+0.1
1,565,462	-		Sama_1275	0.81	+0.2
1,565,462	-		Sama_1275	0.81	+0.2
1,565,559	+		Sama_1275	0.86	-2.4
1,565,576	-		Sama_1275	0.86	-2.4
1,565,595	+		Sama_1275	0.87	+2.1
1,565,595	+		Sama_1275	0.87	-1.2
1,565,596	-		Sama_1275	0.87	-1.7
1,565,623	+		Sama_1275	0.89	+0.1
1,565,623	+		Sama_1275	0.89	-1.2
1,565,624	-		Sama_1275	0.89	-1.5
1,565,624	-		Sama_1275	0.89	-0.9
1,565,629	+		Sama_1275	0.89	-1.8
1,565,629	+		Sama_1275	0.89	-1.2
1,565,629	+		Sama_1275	0.89	+1.7
1,565,629	+		Sama_1275	0.89	-1.5
1,565,629	+		Sama_1275	0.89	+1.9
1,565,629	+		Sama_1275	0.89	-2.0
1,565,630	-		Sama_1275	0.89	-0.9
1,565,630	-		Sama_1275	0.89	-1.2
1,565,644	+		Sama_1275	0.90	-0.7
1,565,644	+		Sama_1275	0.90	-3.0
1,565,645	-		Sama_1275	0.90	-0.0
1,565,645	-		Sama_1275	0.90	-0.0
1,565,645	-		Sama_1275	0.90	+2.8
1,565,645	-		Sama_1275	0.90	-1.9
1,565,647	+		Sama_1275	0.90	+3.5
1,565,647	+		Sama_1275	0.90	-0.7
1,565,647	+		Sama_1275	0.90	-1.5
1,565,647	+		Sama_1275	0.90	-1.2
1,565,647	+		Sama_1275	0.90	-0.7
1,565,647	+		Sama_1275	0.90	+1.1
1,565,648	-		Sama_1275	0.90	+1.0
1,565,648	-		Sama_1275	0.90	-0.9
1,565,648	-		Sama_1275	0.90	+0.8
1,565,648	-		Sama_1275	0.90	+1.2
1,565,658	+				-0.7
1,565,677	+				-1.2
1,565,678	-				+1.1
1,565,678	-				-1.2
1,565,678	-				-1.5
1,565,726	+				+1.1
1,565,727	-				+0.2
1,565,727	-				+0.4
1,565,788	+				+2.4
1,565,789	-				+0.1
1,565,817	+				-1.3
1,565,877	+				+0.1
1,565,877	+				-0.6
1,565,912	+				-0.7
1,565,912	+				+0.4
1,565,912	+				-0.1
1,565,912	+				+1.3
1,565,913	-				-1.8
1,565,913	-				+1.7
1,565,921	+				+0.7
1,565,921	+				+0.2
1,565,922	-				-1.5
1,565,922	-				-0.7
1,565,922	-				-1.3
1,565,962	+	nrdG	Sama_1276	0.11	+0.6
1,565,963	-	nrdG	Sama_1276	0.11	-0.7
1,565,963	-	nrdG	Sama_1276	0.11	+0.1
1,565,963	-	nrdG	Sama_1276	0.11	-0.0
1,566,006	-	nrdG	Sama_1276	0.20	+1.1
1,566,070	-	nrdG	Sama_1276	0.33	+0.3
1,566,112	+	nrdG	Sama_1276	0.41	+2.1
1,566,112	+	nrdG	Sama_1276	0.41	-1.3
1,566,206	-	nrdG	Sama_1276	0.60	+0.4
1,566,225	-	nrdG	Sama_1276	0.64	+1.9
1,566,325	+	nrdG	Sama_1276	0.84	-2.7
1,566,326	-	nrdG	Sama_1276	0.84	-1.3
1,566,352	+	nrdG	Sama_1276	0.90	+0.8
1,566,352	+	nrdG	Sama_1276	0.90	+0.9
1,566,353	-	nrdG	Sama_1276	0.90	-1.2
1,566,353	-	nrdG	Sama_1276	0.90	-0.3
1,566,381	+				+0.8
1,566,493	+				-1.2
1,566,494	-				+0.4
1,566,498	+				+1.1
1,566,498	+				+1.7
1,566,498	+				+0.1
1,566,498	+				-0.8
1,566,498	+				-1.2
1,566,498	+				-0.3
1,566,499	-				+1.3
1,566,499	-				-0.3
1,566,512	+				+0.9
1,566,558	+				+1.1
1,566,558	+				-1.5
1,566,563	+				+1.2
1,566,581	+				-0.2
1,566,581	+				+0.7
1,566,586	+				+0.7
1,566,644	+				-0.5
1,567,291	+				-1.2
1,567,307	+				-1.2
1,567,307	+				-0.7
1,567,307	+				+0.4
1,567,307	+				+0.9
1,567,308	-				-0.7
1,567,309	+				-0.1
1,567,324	+				-0.2
1,567,324	+				-1.3
1,567,324	+				+1.7
1,567,324	+				+0.2
1,567,324	+				-1.3
1,567,324	+				+1.2
1,567,324	+				-1.8
1,567,324	+				-0.8