Strain Fitness in Shewanella amazonensis SB2B around Sama_1216

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,496,955	+				-2.5
1,496,970	+				-0.9
1,498,841	+				+1.3
1,498,842	-				-1.5
1,498,847	-				+1.3
1,498,847	-				+0.7
1,498,847	-				+0.3
1,498,897	+				-1.5
1,498,903	-				+0.2
1,498,903	-				+0.3
1,498,903	-				-1.5
1,498,903	-				+2.1
1,499,006	-		Sama_1217	0.18	+1.2
1,499,035	+		Sama_1217	0.22	-2.1
1,499,052	+		Sama_1217	0.25	+0.7
1,499,052	+		Sama_1217	0.25	-1.5
1,499,052	+		Sama_1217	0.25	-1.9
1,499,052	+		Sama_1217	0.25	-2.0
1,499,053	-		Sama_1217	0.25	+1.4
1,499,053	-		Sama_1217	0.25	-0.2
1,499,070	+		Sama_1217	0.28	-0.9
1,499,101	+		Sama_1217	0.34	-0.9
1,499,101	+		Sama_1217	0.34	-0.9
1,499,102	-		Sama_1217	0.34	+1.1
1,499,118	+		Sama_1217	0.36	-1.5
1,499,119	-		Sama_1217	0.37	-0.7
1,499,119	-		Sama_1217	0.37	-0.9
1,499,141	-		Sama_1217	0.40	+2.0
1,499,161	-		Sama_1217	0.44	+1.3
1,499,209	+		Sama_1217	0.52	-0.2
1,499,209	+		Sama_1217	0.52	+2.0
1,499,232	+		Sama_1217	0.55	+0.7
1,499,233	-		Sama_1217	0.56	-1.5
1,499,233	-		Sama_1217	0.56	-0.9
1,499,233	-		Sama_1217	0.56	+0.8
1,499,247	-		Sama_1217	0.58	-0.9
1,499,268	+		Sama_1217	0.61	-0.4
1,499,268	+		Sama_1217	0.61	-0.1
1,499,268	+		Sama_1217	0.61	+1.7
1,499,269	-		Sama_1217	0.62	-1.9
1,499,272	+		Sama_1217	0.62	-0.5
1,499,273	-		Sama_1217	0.62	+0.9
1,499,273	-		Sama_1217	0.62	-0.8
1,499,284	+		Sama_1217	0.64	-1.5
1,499,284	+		Sama_1217	0.64	-1.1
1,499,284	+		Sama_1217	0.64	+1.8
1,499,286	+		Sama_1217	0.64	-0.3
1,499,286	+		Sama_1217	0.64	+0.3
1,499,286	+		Sama_1217	0.64	+1.1
1,499,286	+		Sama_1217	0.64	-1.1
1,499,286	+		Sama_1217	0.64	-1.7
1,499,286	+		Sama_1217	0.64	-0.7
1,499,286	+		Sama_1217	0.64	+0.1
1,499,286	+		Sama_1217	0.64	+2.0
1,499,287	-		Sama_1217	0.65	-0.3
1,499,287	-		Sama_1217	0.65	+1.1
1,499,287	-		Sama_1217	0.65	-1.5
1,499,287	-		Sama_1217	0.65	-1.8
1,499,287	-		Sama_1217	0.65	+0.9
1,499,287	-		Sama_1217	0.65	-0.2
1,499,287	-		Sama_1217	0.65	+1.7
1,499,287	-		Sama_1217	0.65	-1.7
1,499,313	-		Sama_1217	0.69	-0.3
1,499,313	-		Sama_1217	0.69	+0.7
1,499,313	-		Sama_1217	0.69	-0.7
1,499,362	-		Sama_1217	0.77	-1.3
1,499,362	-		Sama_1217	0.77	-1.8
1,499,372	-		Sama_1217	0.79	-0.7
1,499,372	-		Sama_1217	0.79	-1.3
1,499,469	+				+0.1
1,499,469	+				-0.7
1,499,469	+				-0.7
1,499,469	+				-0.3
1,499,469	+				+0.7
1,499,469	+				-0.1
1,499,470	-				-1.1
1,499,471	+				-0.7
1,499,480	+				+1.2
1,499,492	+				-0.3
1,499,498	+				+0.9
1,499,498	+				-0.7
1,499,499	-				+1.3
1,499,500	+				-0.4
1,499,500	+				-2.1
1,499,500	+				-3.2
1,499,500	+				-0.0
1,499,500	+				-2.2
1,499,500	+				-2.0
1,499,501	-				+0.7
1,499,501	-				+0.1
1,499,501	-				+0.9
1,499,501	-				+1.2
1,499,501	-				-0.7
1,499,501	-				-0.9
1,499,501	-				+0.8
1,499,501	-				-1.1
1,499,501	-				+1.6
1,499,501	-				+1.0
1,499,504	+				+0.6
1,499,504	+				-1.1
1,499,505	-				+0.6
1,499,505	-				-0.6
1,499,556	+				-2.9
1,499,557	-				-1.7
1,499,557	-				+1.4
1,499,607	+				+1.1
1,499,617	+				+1.0
1,499,617	+				-0.1
1,499,618	-				-1.5
1,499,635	+				+0.1
1,499,636	-				+1.8
1,499,661	+				+0.2
1,499,662	-				+0.7
1,499,682	+				-0.3
1,499,770	-		Sama_1218	0.12	+2.5