Strain Fitness in Shewanella amazonensis SB2B around Sama_0901

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,088,806	+				+0.3
1,088,807	-				-1.2
1,088,807	-				+0.3
1,088,834	-				+1.0
1,088,906	-				+0.8
1,088,918	-				+0.6
1,088,932	+				-1.3
1,088,933	-				-0.6
1,088,933	-				-1.3
1,089,004	-				+1.0
1,089,016	+				-0.1
1,089,016	+				+1.3
1,089,016	+				+5.2
1,089,016	+				-0.6
1,089,016	+				-0.6
1,089,016	+				+1.5
1,089,016	+				-0.6
1,089,016	+				+0.2
1,089,017	-				-1.3
1,089,017	-				-0.5
1,089,017	-				+1.3
1,089,141	+		Sama_0900	0.18	+1.8
1,089,143	+		Sama_0900	0.19	-0.1
1,089,144	-		Sama_0900	0.19	-1.9
1,089,247	-		Sama_0900	0.34	+0.7
1,089,293	+		Sama_0900	0.41	-0.5
1,089,294	-		Sama_0900	0.41	+0.9
1,089,309	+		Sama_0900	0.43	-0.7
1,089,310	-		Sama_0900	0.44	+1.5
1,089,310	-		Sama_0900	0.44	+0.5
1,089,310	-		Sama_0900	0.44	+1.6
1,089,317	-		Sama_0900	0.45	-0.5
1,089,317	-		Sama_0900	0.45	-0.2
1,089,353	-		Sama_0900	0.50	-0.2
1,089,470	-		Sama_0900	0.68	-1.2
1,089,470	-		Sama_0900	0.68	-0.0
1,089,484	+		Sama_0900	0.70	-0.1
1,089,484	+		Sama_0900	0.70	-1.2
1,089,484	+		Sama_0900	0.70	+1.0
1,089,484	+		Sama_0900	0.70	+1.0
1,089,484	+		Sama_0900	0.70	-0.1
1,089,490	+		Sama_0900	0.71	-3.1
1,089,490	+		Sama_0900	0.71	+2.6
1,089,490	+		Sama_0900	0.71	-2.3
1,089,490	+		Sama_0900	0.71	+0.6
1,089,490	+		Sama_0900	0.71	-1.6
1,089,490	+		Sama_0900	0.71	+1.0
1,089,490	+		Sama_0900	0.71	+0.0
1,089,490	+		Sama_0900	0.71	-0.9
1,089,490	+		Sama_0900	0.71	+1.4
1,089,490	+		Sama_0900	0.71	+1.8
1,089,490	+		Sama_0900	0.71	+0.6
1,089,490	+		Sama_0900	0.71	+0.6
1,089,491	-		Sama_0900	0.71	-3.2
1,089,491	-		Sama_0900	0.71	+1.4
1,089,511	+		Sama_0900	0.74	-0.2
1,089,511	+		Sama_0900	0.74	-2.2
1,089,511	+		Sama_0900	0.74	+1.8
1,089,511	+		Sama_0900	0.74	+1.0
1,089,512	-		Sama_0900	0.74	+1.3
1,089,529	+		Sama_0900	0.76	-0.6
1,089,529	+		Sama_0900	0.76	-0.4
1,089,583	+		Sama_0900	0.84	+1.5
1,089,583	+		Sama_0900	0.84	-0.0
1,089,583	+		Sama_0900	0.84	+0.5
1,089,583	+		Sama_0900	0.84	-0.3
1,089,583	+		Sama_0900	0.84	+1.2
1,089,584	-		Sama_0900	0.85	+0.0
1,089,587	+		Sama_0900	0.85	-1.7
1,089,640	+				+1.0
1,089,640	+				+0.1
1,089,641	-				-0.7
1,089,641	-				+0.3
1,089,644	+				-0.5
1,089,644	+				-1.2
1,089,644	+				+0.8
1,089,644	+				+1.2
1,089,644	+				+0.5
1,089,645	-				-1.2
1,089,645	-				+1.8
1,089,651	+				+1.1
1,089,651	+				-2.1
1,089,652	-				+0.1
1,089,655	+				-0.1
1,089,655	+				+0.7
1,089,655	+				-3.2
1,089,655	+				-0.2
1,089,655	+				-1.0
1,089,656	-				+1.5
1,089,656	-				-1.9
1,089,656	-				+0.8
1,089,684	+				-1.2
1,089,685	-				-1.2
1,089,694	+				-1.2
1,089,751	+				-0.2
1,089,752	-				-1.5
1,089,752	-				-0.7
1,089,763	+				-1.8
1,089,763	+				+1.0
1,089,763	+				+0.8
1,089,763	+				+2.7
1,089,763	+				+0.6
1,089,764	-				-1.2
1,089,783	-				-0.5
1,089,783	-				+0.4
1,089,798	-		Sama_0901	0.11	-2.1
1,089,803	+		Sama_0901	0.12	-0.7
1,089,803	+		Sama_0901	0.12	+1.7
1,089,803	+		Sama_0901	0.12	-0.9
1,089,804	-		Sama_0901	0.12	-2.5
1,089,804	-		Sama_0901	0.12	+0.1
1,089,804	-		Sama_0901	0.12	+0.9
1,089,804	-		Sama_0901	0.12	+0.5
1,089,804	-		Sama_0901	0.12	+2.1
1,089,804	-		Sama_0901	0.12	-0.7
1,089,884	+		Sama_0901	0.30	+1.0
1,089,884	+		Sama_0901	0.30	+0.9
1,089,884	+		Sama_0901	0.30	+1.4
1,089,884	+		Sama_0901	0.30	-0.7
1,089,885	-		Sama_0901	0.30	-1.6
1,089,885	-		Sama_0901	0.30	+0.7
1,089,885	-		Sama_0901	0.30	-0.4
1,089,960	-		Sama_0901	0.47	+0.3
1,089,993	+		Sama_0901	0.55	+3.4
1,090,040	+		Sama_0901	0.65	-1.0
1,090,041	-		Sama_0901	0.66	-1.0
1,090,041	-		Sama_0901	0.66	+2.4
1,090,041	-		Sama_0901	0.66	-1.3
1,090,041	-		Sama_0901	0.66	+0.3
1,090,041	-		Sama_0901	0.66	+3.4
1,090,075	+		Sama_0901	0.73	-1.4
1,090,076	-		Sama_0901	0.73	+0.7
1,090,076	-		Sama_0901	0.73	+2.9
1,090,106	-		Sama_0901	0.80	-0.5
1,090,197	+				-2.1
1,090,244	+				-2.2
1,090,244	+				-0.2
1,090,264	+				+0.1
1,090,265	-				-0.2
1,090,265	-				-0.0
1,090,265	-				+1.0
1,090,265	-				-1.2
1,090,305	+				-1.4
1,090,305	+				-0.2
1,090,306	-				-2.1
1,090,306	-				+0.4
1,090,306	-				+0.5
1,090,317	+				+0.8
1,090,317	+				-0.4
1,090,337	+				+0.6
1,090,337	+				+0.1
1,090,337	+				-0.7
1,090,338	-				+0.1
1,090,338	-				+0.8
1,090,338	-				-0.2
1,090,355	+				+0.8
1,090,355	+				-0.9
1,090,355	+				-0.3
1,090,355	+				-0.5
1,090,355	+				+0.2
1,090,355	+				+0.3
1,090,355	+				+1.8
1,090,355	+				+0.5
1,090,356	-				-0.2
1,090,356	-				+1.8
1,090,356	-				+0.4
1,090,356	-				+0.8
1,090,356	-				-0.0
1,090,356	-				-1.3
1,090,356	-				+0.3
1,090,356	-				-1.0
1,090,356	-				-0.7
1,090,356	-				-0.6
1,090,356	-				+0.5
1,090,356	-				-0.6
1,090,374	+				-2.1
1,090,375	+				-1.8
1,090,375	+				-1.0
1,090,376	-				-0.2
1,090,376	-				+1.5
1,090,376	-				-1.4
1,090,378	+				-2.4
1,090,378	+				-0.3
1,090,379	-				-0.3
1,090,379	-				+1.5
1,090,379	-				+1.4
1,090,408	+				-1.5
1,090,413	+		Sama_0902	0.11	-1.3
1,090,459	-		Sama_0902	0.27	-2.7
1,090,465	+		Sama_0902	0.29	-1.6
1,090,466	-		Sama_0902	0.29	-1.2
1,090,533	-		Sama_0902	0.52	-0.5
1,090,594	+		Sama_0902	0.72	-0.3
1,090,595	-		Sama_0902	0.73	-1.4
1,090,595	-		Sama_0902	0.73	-1.9
1,090,598	+		Sama_0902	0.74	-1.3
1,090,598	+		Sama_0902	0.74	-0.8
1,090,599	-		Sama_0902	0.74	+1.3
1,090,599	-		Sama_0902	0.74	+0.3
1,090,635	+		Sama_0902	0.86	-0.7
1,090,636	-		Sama_0902	0.87	-1.0
1,090,650	+				+2.6
1,090,650	+				+0.7
1,090,651	-				-1.2
1,090,651	-				+0.9
1,090,651	-				-2.0
1,090,677	+				-1.7
1,090,697	+				+1.3
1,090,697	+				-1.3
1,090,698	-				-0.2
1,090,737	+		Sama_0903	0.16	+0.4
1,090,738	-		Sama_0903	0.16	+1.1
1,090,746	+		Sama_0903	0.19	-0.5
1,090,747	-		Sama_0903	0.19	-0.3
1,090,761	-		Sama_0903	0.22	+0.7
1,090,774	+		Sama_0903	0.26	+0.7
1,090,845	+		Sama_0903	0.45	+1.0
1,090,845	+		Sama_0903	0.45	+0.3
1,090,846	-		Sama_0903	0.45	-0.2
1,090,920	+		Sama_0903	0.65	+1.8
1,090,920	+		Sama_0903	0.65	-3.0
1,090,920	+		Sama_0903	0.65	-1.5
1,090,920	+		Sama_0903	0.65	+0.5
1,090,949	+		Sama_0903	0.72	-1.0
1,090,949	+		Sama_0903	0.72	-0.2
1,090,949	+		Sama_0903	0.72	-2.7
1,090,950	-		Sama_0903	0.72	-1.4
1,090,950	-		Sama_0903	0.72	+1.1
1,090,950	-		Sama_0903	0.72	+1.1
1,091,034	+				-0.5
1,091,034	+				-1.6
1,091,034	+				-1.3
1,091,035	-				+0.4
1,091,053	+				-1.2
1,091,053	+				-0.4
1,091,053	+				+0.2
1,091,053	+				+2.4
1,091,053	+				-0.3
1,091,053	+				+0.9
1,091,053	+				-0.1
1,091,053	+				-1.0
1,091,053	+				-0.5
1,091,053	+				+1.6
1,091,053	+				+0.1
1,091,053	+				-1.3
1,091,053	+				+0.8
1,091,054	-				+0.8
1,091,054	-				+0.8
1,091,054	-				-0.3
1,091,054	-				-1.5
1,091,054	-				-1.3
1,091,055	+				+0.4
1,091,055	+				-0.4
1,091,055	+				+0.7
1,091,055	+				-0.3
1,091,055	+				-1.0
1,091,055	+				-0.4
1,091,055	+				+0.8
1,091,055	+				-1.2
1,091,055	+				-0.3
1,091,055	+				+1.0
1,091,055	+				-1.7
1,091,055	+				+1.8
1,091,055	+				-1.3
1,091,055	+				-0.6
1,091,055	+				+0.8
1,091,055	+				-1.0
1,091,056	-				-0.7
1,091,056	-				+0.0
1,091,056	-				+0.1
1,091,056	-				+0.6
1,091,056	-				-1.8
1,091,056	-				-2.5
1,091,056	-				-0.4
1,091,072	+				+0.8
1,091,095	+				+0.6
1,091,097	+				-2.9
1,091,097	+				-1.9
1,091,097	+				-2.6
1,091,098	-				-0.4
1,091,098	-				-0.4
1,091,098	-				+0.8
1,091,098	-				+0.1
1,091,098	-				+1.4
1,091,100	+				-2.3
1,091,100	+				+1.8
1,091,101	-				+1.6
1,091,145	+				-0.7
1,091,151	+				-0.2
1,091,155	-				-2.9
1,091,166	-				-1.2
1,091,166	-				-0.5