Strain Fitness in Shewanella amazonensis SB2B around Sama_0886

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,073,152	-	acpS	Sama_0884	0.38	-0.3
1,073,152	-	acpS	Sama_0884	0.38	-1.9
1,073,209	+	acpS	Sama_0884	0.53	-1.9
1,073,209	+	acpS	Sama_0884	0.53	-1.9
1,073,209	+	acpS	Sama_0884	0.53	-0.2
1,073,209	+	acpS	Sama_0884	0.53	-1.6
1,073,209	+	acpS	Sama_0884	0.53	-1.6
1,073,209	+	acpS	Sama_0884	0.53	-1.2
1,073,209	+	acpS	Sama_0884	0.53	-0.2
1,073,209	+	acpS	Sama_0884	0.53	-0.2
1,073,209	+	acpS	Sama_0884	0.53	-2.3
1,073,209	+	acpS	Sama_0884	0.53	-1.3
1,073,209	+	acpS	Sama_0884	0.53	-2.8
1,073,209	+	acpS	Sama_0884	0.53	-2.3
1,073,210	-	acpS	Sama_0884	0.54	-3.2
1,073,210	-	acpS	Sama_0884	0.54	-0.5
1,073,210	-	acpS	Sama_0884	0.54	-3.2
1,073,210	-	acpS	Sama_0884	0.54	-1.7
1,073,210	-	acpS	Sama_0884	0.54	-1.0
1,073,234	+	acpS	Sama_0884	0.60	-0.2
1,073,235	-	acpS	Sama_0884	0.60	-1.1
1,073,236	-	acpS	Sama_0884	0.61	-0.7
1,073,244	+	acpS	Sama_0884	0.63	-0.2
1,073,245	-	acpS	Sama_0884	0.63	-0.6
1,073,245	-	acpS	Sama_0884	0.63	-1.5
1,073,245	-	acpS	Sama_0884	0.63	-1.3
1,073,245	-	acpS	Sama_0884	0.63	-2.4
1,073,356	-				-0.6
1,073,374	+				-1.2
1,073,374	+				-1.6
1,073,375	-				-1.9
1,073,390	+				+0.5
1,073,390	+				-0.5
1,073,391	-				+0.6
1,073,471	+				-0.5
1,073,472	-				-0.5
1,073,472	-				+1.7
1,073,472	-				-1.5
1,073,472	-				-0.7
1,073,487	-				-1.3
1,073,524	+				+0.3
1,073,524	+				-0.7
1,073,524	+				-0.6
1,073,524	+				+0.1
1,073,525	-				+1.5
1,073,525	-				-1.6
1,073,525	-				-1.7
1,073,525	-				+0.5
1,073,549	+				+1.3
1,073,549	+				+0.1
1,073,550	-				+0.8
1,073,550	-				+1.0
1,073,550	-				+0.3
1,073,580	+				+1.0
1,073,580	+				-1.6
1,073,580	+				-0.4
1,073,581	-				-2.0
1,073,582	+				-1.3
1,073,582	+				-0.3
1,073,582	+				-2.7
1,073,582	+				-0.5
1,073,582	+				-0.7
1,073,583	-				-0.5
1,073,583	-				-1.9
1,073,583	-				+0.8
1,073,583	-				-0.6
1,073,583	-				-0.7
1,073,583	-				+1.5
1,073,612	+		Sama_0885	0.12	-1.7
1,073,612	+		Sama_0885	0.12	-2.0
1,073,613	-		Sama_0885	0.12	+0.4
1,073,631	-		Sama_0885	0.15	+0.8
1,073,639	+		Sama_0885	0.17	-1.2
1,073,639	+		Sama_0885	0.17	-0.6
1,073,724	-		Sama_0885	0.33	+2.0
1,073,724	-		Sama_0885	0.33	-1.5
1,073,724	-		Sama_0885	0.33	-2.3
1,073,724	-		Sama_0885	0.33	-1.2
1,073,742	+		Sama_0885	0.36	-1.5
1,073,742	+		Sama_0885	0.36	+2.8
1,073,743	-		Sama_0885	0.37	+2.8
1,073,743	-		Sama_0885	0.37	-1.2
1,073,743	-		Sama_0885	0.37	-1.5
1,073,745	+		Sama_0885	0.37	-2.0
1,073,745	+		Sama_0885	0.37	+0.4
1,073,745	+		Sama_0885	0.37	-0.7
1,073,745	+		Sama_0885	0.37	-1.6
1,073,746	-		Sama_0885	0.37	-1.7
1,073,746	-		Sama_0885	0.37	-0.7
1,073,746	-		Sama_0885	0.37	+0.5
1,073,746	-		Sama_0885	0.37	-0.7
1,073,805	+		Sama_0885	0.48	-0.7
1,073,805	+		Sama_0885	0.48	+1.3
1,073,805	+		Sama_0885	0.48	+0.5
1,073,806	-		Sama_0885	0.48	-2.1
1,073,933	+		Sama_0885	0.73	-1.2
1,073,933	+		Sama_0885	0.73	-0.2
1,073,934	-		Sama_0885	0.73	-0.8
1,073,979	+		Sama_0885	0.81	+0.3
1,073,980	-		Sama_0885	0.81	+1.0
1,074,021	-		Sama_0885	0.89	-0.1
1,074,034	+				+2.0
1,074,093	+				+0.6
1,074,094	-				+0.1
1,074,143	-				-2.7
1,074,176	+				-0.5
1,074,177	-				+2.7
1,074,223	-				+1.1
1,074,230	+				+0.4
1,074,257	-		Sama_0886	0.12	-1.9
1,074,341	+		Sama_0886	0.18	+0.1
1,074,341	+		Sama_0886	0.18	+0.6
1,074,342	-		Sama_0886	0.18	+1.3
1,074,408	-		Sama_0886	0.23	-0.5
1,074,408	-		Sama_0886	0.23	+0.4
1,074,408	-		Sama_0886	0.23	-1.2
1,074,408	-		Sama_0886	0.23	+0.4
1,074,408	-		Sama_0886	0.23	-0.4
1,074,408	-		Sama_0886	0.23	+0.1
1,074,408	-		Sama_0886	0.23	+0.8
1,074,470	+		Sama_0886	0.28	+3.6
1,074,471	-		Sama_0886	0.28	-0.7
1,074,471	-		Sama_0886	0.28	-0.7
1,074,478	+		Sama_0886	0.29	+0.1
1,074,479	-		Sama_0886	0.29	+0.8
1,074,479	-		Sama_0886	0.29	-0.6
1,074,500	+		Sama_0886	0.30	+0.8
1,074,500	+		Sama_0886	0.30	+0.4
1,074,501	-		Sama_0886	0.30	-0.8
1,074,501	-		Sama_0886	0.30	-1.0
1,074,501	-		Sama_0886	0.30	-2.3
1,074,512	+		Sama_0886	0.31	-1.8
1,074,512	+		Sama_0886	0.31	-0.6
1,074,513	-		Sama_0886	0.31	-0.4
1,074,513	-		Sama_0886	0.31	-1.0
1,074,513	-		Sama_0886	0.31	+1.8
1,074,561	-		Sama_0886	0.35	-1.8
1,074,565	+		Sama_0886	0.35	+1.8
1,074,565	+		Sama_0886	0.35	+0.7
1,074,565	+		Sama_0886	0.35	+0.3
1,074,566	-		Sama_0886	0.36	-0.3
1,074,566	-		Sama_0886	0.36	+1.5
1,074,566	-		Sama_0886	0.36	-2.1
1,074,566	-		Sama_0886	0.36	-2.0
1,074,576	+		Sama_0886	0.36	+0.3
1,074,576	+		Sama_0886	0.36	-0.9
1,074,577	-		Sama_0886	0.36	-0.2
1,074,627	+		Sama_0886	0.40	-1.6
1,074,628	-		Sama_0886	0.40	+0.5
1,074,647	+		Sama_0886	0.42	+0.1
1,074,648	-		Sama_0886	0.42	+0.8
1,074,655	-		Sama_0886	0.42	-1.7
1,074,666	+		Sama_0886	0.43	-1.3
1,074,667	-		Sama_0886	0.43	+0.3
1,074,667	-		Sama_0886	0.43	+0.5
1,074,667	-		Sama_0886	0.43	+0.5
1,074,680	-		Sama_0886	0.44	-2.3
1,074,681	+		Sama_0886	0.44	-0.2
1,074,681	+		Sama_0886	0.44	-1.5
1,074,814	-		Sama_0886	0.55	+0.0
1,074,867	+		Sama_0886	0.59	+0.7
1,074,930	-		Sama_0886	0.64	+2.1
1,074,930	-		Sama_0886	0.64	+0.3
1,074,930	-		Sama_0886	0.64	-2.0
1,074,956	+		Sama_0886	0.66	-0.3
1,074,957	-		Sama_0886	0.66	+0.5
1,074,957	-		Sama_0886	0.66	-2.2
1,074,957	-		Sama_0886	0.66	-0.5
1,074,985	-		Sama_0886	0.68	+1.0
1,075,001	+		Sama_0886	0.69	-0.7
1,075,001	+		Sama_0886	0.69	-1.7
1,075,001	+		Sama_0886	0.69	+1.7
1,075,001	+		Sama_0886	0.69	+0.5
1,075,001	+		Sama_0886	0.69	+1.5
1,075,001	+		Sama_0886	0.69	+0.6
1,075,002	-		Sama_0886	0.69	-0.2
1,075,002	-		Sama_0886	0.69	+0.8
1,075,021	+		Sama_0886	0.71	-0.7
1,075,077	+		Sama_0886	0.75	-1.0
1,075,078	-		Sama_0886	0.75	+0.6
1,075,086	+		Sama_0886	0.76	+0.7
1,075,087	-		Sama_0886	0.76	+0.8
1,075,143	-		Sama_0886	0.80	-0.7
1,075,143	-		Sama_0886	0.80	+0.7
1,075,148	+		Sama_0886	0.81	-0.0
1,075,148	+		Sama_0886	0.81	+2.1
1,075,149	-		Sama_0886	0.81	+0.5
1,075,190	+		Sama_0886	0.84	+0.3
1,075,191	-		Sama_0886	0.84	+0.8
1,075,203	-		Sama_0886	0.85	-2.2
1,075,333	+				-1.1
1,075,350	+				-1.9
1,075,351	-				-1.2
1,075,351	-				-1.5
1,075,351	-				-2.1
1,075,356	+				+1.4
1,075,357	-				+1.0
1,075,357	-				+0.3
1,075,357	-				+0.1
1,075,412	-				-0.3
1,075,426	+				-0.8
1,075,427	-				+0.0
1,075,427	-				+0.8
1,075,427	-				-0.7
1,075,427	-				-0.3
1,075,427	-				+1.1
1,075,427	-				+2.0
1,075,427	-				-0.2
1,075,427	-				+1.1
1,075,430	+				+1.5
1,075,431	-				-1.6
1,075,431	-				+0.1
1,075,431	-				+0.7
1,075,431	-				+0.3
1,075,431	-				-1.0
1,075,431	-				+0.5
1,075,434	+				-1.2
1,075,435	-				-0.6
1,075,445	+				+0.1
1,075,493	+				+0.2
1,075,494	-				-1.6
1,075,494	-				-1.7
1,075,856	+		Sama_0887	0.46	-1.3
1,075,967	-		Sama_0887	0.60	+0.5
1,075,997	+		Sama_0887	0.64	+0.3
1,076,000	-		Sama_0887	0.64	-0.2
1,076,000	-		Sama_0887	0.64	-0.2
1,076,000	-		Sama_0887	0.64	-0.2
1,076,153	-		Sama_0887	0.84	+0.3
1,076,241	+				+0.3
1,076,285	+				+2.0
1,076,350	-				-0.7
1,076,355	-				+0.8
1,076,387	-				-2.3
1,076,387	-				-0.1
1,076,387	-				-1.0