Strain Fitness in Shewanella amazonensis SB2B around Sama_0839

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
1,022,262	+		Sama_0837	0.88	+1.3
1,022,262	+		Sama_0837	0.88	-0.8
1,022,262	+		Sama_0837	0.88	+0.6
1,022,262	+		Sama_0837	0.88	-0.5
1,022,262	+		Sama_0837	0.88	+0.2
1,022,262	+		Sama_0837	0.88	-0.7
1,022,262	+		Sama_0837	0.88	-1.7
1,022,263	-		Sama_0837	0.88	+0.5
1,022,307	+				-1.3
1,022,308	-				-0.3
1,022,308	-				+0.9
1,022,308	-				-1.6
1,022,383	+				-1.0
1,022,383	+				-1.0
1,022,406	+				+0.3
1,022,406	+				-0.6
1,022,406	+				+0.2
1,022,407	-				+0.3
1,022,415	+				+2.0
1,022,415	+				-1.5
1,022,416	-				+1.0
1,022,416	-				+0.4
1,022,449	-				+2.7
1,022,459	+				+0.9
1,022,498	-				-0.7
1,022,506	+				+1.2
1,022,512	-				-1.5
1,022,633	+				-1.4
1,022,634	-				+1.1
1,022,672	+				+0.3
1,022,707	+				+1.9
1,022,707	+				-1.1
1,022,707	+				-2.2
1,022,707	+				+0.6
1,022,707	+				-0.6
1,022,707	+				-0.1
1,022,708	-				+2.8
1,022,708	-				+0.3
1,022,708	-				-1.8
1,022,708	-				-1.5
1,022,708	-				-1.5
1,022,708	-				-0.7
1,022,708	-				-0.3
1,022,709	+				+0.4
1,022,709	+				-1.3
1,022,709	+				+1.1
1,022,710	-				+0.1
1,022,710	-				-1.5
1,022,716	+				-1.7
1,022,743	+				-0.7
1,022,787	+				-0.1
1,022,787	+				+0.5
1,022,792	+				-2.5
1,022,792	+				-0.5
1,022,793	-				-0.3
1,022,794	+				-1.7
1,022,813	-				-1.0
1,022,857	+				-2.7
1,022,876	+				-1.3
1,022,883	+				+1.1
1,022,884	-				+0.8
1,022,898	+				-2.8
1,022,957	+		Sama_0838	0.12	+0.1
1,023,089	+		Sama_0838	0.83	-0.3
1,023,089	+		Sama_0838	0.83	+0.9
1,023,089	+		Sama_0838	0.83	-1.6
1,023,089	+		Sama_0838	0.83	-1.1
1,023,090	-		Sama_0838	0.83	-2.0
1,023,118	+				-0.1
1,023,118	+				+0.7
1,023,119	-				-0.5
1,023,119	-				+0.4
1,023,123	+				+1.6
1,023,123	+				+0.9
1,023,188	+				-1.3
1,023,189	-				+0.9
1,023,189	-				-0.8
1,023,263	+				-1.5
1,023,263	+				-1.2
1,023,264	-				+1.7
1,023,264	-				+0.8
1,023,264	-				-2.2
1,023,264	-				+0.1
1,024,577	-				+1.9
1,024,577	-				+0.7
1,024,577	-				-1.3
1,024,577	-				-1.0
1,024,605	-				+0.4
1,024,791	-		Sama_0840	0.21	-1.5
1,024,791	-		Sama_0840	0.21	-1.3
1,024,791	-		Sama_0840	0.21	-1.3
1,024,800	-		Sama_0840	0.22	+1.3
1,024,800	-		Sama_0840	0.22	-1.2
1,024,901	-		Sama_0840	0.32	+0.9
1,024,956	-		Sama_0840	0.37	+0.7
1,025,024	+		Sama_0840	0.44	-0.3
1,025,070	+		Sama_0840	0.49	+0.6
1,025,071	-		Sama_0840	0.49	+2.3
1,025,071	-		Sama_0840	0.49	-0.5
1,025,071	-		Sama_0840	0.49	-1.4
1,025,087	+		Sama_0840	0.50	-0.5
1,025,124	-		Sama_0840	0.54	+0.9
1,025,130	-		Sama_0840	0.54	-0.4
1,025,293	+		Sama_0840	0.70	+1.4
1,025,294	-		Sama_0840	0.70	-1.5
1,025,294	-		Sama_0840	0.70	-0.6
1,025,294	-		Sama_0840	0.70	+0.1
1,025,294	-		Sama_0840	0.70	+0.5
1,025,454	+		Sama_0840	0.86	-2.1
1,025,455	-		Sama_0840	0.86	-1.1
1,025,498	-				-0.3
1,025,507	+				-0.1
1,025,508	-				-1.2
1,025,528	+				-0.1
1,025,529	-				+0.8