Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0789 and valS are separated by 104 nucleotides valS and Sama_0791 are separated by 15 nucleotides Sama_0791 and Sama_0792 are separated by 130 nucleotides
Sama_0789: Sama_0789 - aspartate ammonia-lyase (RefSeq), at 971,562 to 972,980
_0789
Sama_0790: valS - valyl-tRNA synthetase (RefSeq), at 973,085 to 975,946
valS
Sama_0791: Sama_0791 - DNA polymerase III, chi subunit (RefSeq), at 975,962 to 976,417
_0791
Sama_0792: Sama_0792 - TetR family transcriptional regulator (RefSeq), at 976,548 to 977,186
_0792
Position (kb) 973
974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 972.095 kb on + strand, within Sama_0789 at 972.185 kb on + strand, within Sama_0789 at 972.185 kb on + strand, within Sama_0789 at 972.185 kb on + strand, within Sama_0789 at 972.196 kb on + strand, within Sama_0789 at 972.196 kb on + strand, within Sama_0789 at 972.196 kb on + strand, within Sama_0789 at 972.196 kb on + strand, within Sama_0789 at 972.267 kb on - strand, within Sama_0789 at 972.269 kb on + strand, within Sama_0789 at 972.285 kb on + strand, within Sama_0789 at 972.285 kb on + strand, within Sama_0789 at 972.301 kb on + strand, within Sama_0789 at 972.320 kb on + strand, within Sama_0789 at 972.404 kb on + strand, within Sama_0789 at 972.404 kb on + strand, within Sama_0789 at 972.437 kb on + strand, within Sama_0789 at 972.545 kb on + strand, within Sama_0789 at 972.660 kb on + strand, within Sama_0789 at 972.662 kb on + strand, within Sama_0789 at 972.674 kb on + strand, within Sama_0789 at 972.674 kb on + strand, within Sama_0789 at 972.722 kb on + strand, within Sama_0789 at 972.784 kb on + strand, within Sama_0789 at 972.784 kb on + strand, within Sama_0789 at 972.784 kb on + strand, within Sama_0789 at 972.784 kb on + strand, within Sama_0789 at 972.784 kb on + strand, within Sama_0789 at 972.785 kb on - strand, within Sama_0789 at 972.896 kb on + strand at 972.923 kb on - strand at 972.999 kb on - strand at 973.069 kb on + strand at 973.070 kb on - strand at 973.070 kb on - strand at 973.070 kb on - strand at 973.070 kb on - strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.077 kb on - strand at 973.077 kb on - strand at 973.077 kb on - strand at 975.969 kb on - strand at 976.119 kb on - strand, within Sama_0791 at 976.306 kb on + strand, within Sama_0791 at 976.306 kb on + strand, within Sama_0791 at 976.306 kb on + strand, within Sama_0791 at 976.307 kb on - strand, within Sama_0791 at 976.307 kb on - strand, within Sama_0791 at 976.308 kb on + strand, within Sama_0791 at 976.308 kb on + strand, within Sama_0791 at 976.308 kb on + strand, within Sama_0791 at 976.309 kb on - strand, within Sama_0791 at 976.309 kb on - strand, within Sama_0791 at 976.309 kb on - strand, within Sama_0791 at 976.394 kb on + strand at 976.394 kb on + strand at 976.394 kb on + strand at 976.395 kb on - strand at 976.395 kb on - strand at 976.395 kb on - strand at 976.398 kb on + strand at 976.398 kb on + strand at 976.398 kb on + strand at 976.399 kb on - strand at 976.399 kb on - strand at 976.433 kb on - strand at 976.433 kb on - strand at 976.448 kb on - strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.455 kb on - strand at 976.455 kb on - strand at 976.455 kb on - strand at 976.467 kb on + strand at 976.468 kb on - strand at 976.472 kb on + strand at 976.472 kb on + strand at 976.472 kb on + strand at 976.472 kb on + strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.489 kb on + strand at 976.489 kb on + strand at 976.489 kb on + strand at 976.549 kb on + strand at 976.549 kb on + strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.563 kb on + strand at 976.567 kb on + strand at 976.568 kb on - strand at 976.568 kb on - strand at 976.673 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.737 kb on - strand, within Sama_0792 at 976.802 kb on + strand, within Sama_0792 at 976.802 kb on + strand, within Sama_0792 at 976.802 kb on + strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.823 kb on + strand, within Sama_0792 at 976.823 kb on + strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.897 kb on - strand, within Sama_0792 at 976.897 kb on - strand, within Sama_0792 at 976.941 kb on + strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 972,095 + Sama_0789 0.38 -0.2 972,185 + Sama_0789 0.44 -1.7 972,185 + Sama_0789 0.44 +0.6 972,185 + Sama_0789 0.44 +1.2 972,196 + Sama_0789 0.45 -1.8 972,196 + Sama_0789 0.45 -0.7 972,196 + Sama_0789 0.45 -1.8 972,196 + Sama_0789 0.45 +0.1 972,267 - Sama_0789 0.50 -1.1 972,269 + Sama_0789 0.50 +2.5 972,285 + Sama_0789 0.51 -0.7 972,285 + Sama_0789 0.51 -0.8 972,301 + Sama_0789 0.52 -1.4 972,320 + Sama_0789 0.53 -1.8 972,404 + Sama_0789 0.59 -0.5 972,404 + Sama_0789 0.59 -0.9 972,437 + Sama_0789 0.62 -2.4 972,545 + Sama_0789 0.69 -1.9 972,660 + Sama_0789 0.77 -1.9 972,662 + Sama_0789 0.78 -1.7 972,674 + Sama_0789 0.78 -1.3 972,674 + Sama_0789 0.78 -2.9 972,722 + Sama_0789 0.82 -1.4 972,784 + Sama_0789 0.86 -0.8 972,784 + Sama_0789 0.86 -3.4 972,784 + Sama_0789 0.86 -0.1 972,784 + Sama_0789 0.86 -0.0 972,784 + Sama_0789 0.86 +0.9 972,785 - Sama_0789 0.86 -2.1 972,896 + -0.6 972,923 - -0.9 972,999 - +0.3 973,069 + -1.1 973,070 - -3.0 973,070 - +0.4 973,070 - -1.5 973,070 - -1.3 973,076 + +1.5 973,076 + -0.2 973,076 + -0.1 973,076 + -1.5 973,076 + +0.5 973,076 + -0.7 973,076 + +0.2 973,077 - +1.4 973,077 - -0.7 973,077 - -1.3 975,969 - +0.5 976,119 - Sama_0791 0.34 +1.9 976,306 + Sama_0791 0.75 -1.1 976,306 + Sama_0791 0.75 +0.4 976,306 + Sama_0791 0.75 +0.3 976,307 - Sama_0791 0.76 -0.3 976,307 - Sama_0791 0.76 -0.3 976,308 + Sama_0791 0.76 +1.1 976,308 + Sama_0791 0.76 -0.7 976,308 + Sama_0791 0.76 -1.1 976,309 - Sama_0791 0.76 -1.6 976,309 - Sama_0791 0.76 -0.7 976,309 - Sama_0791 0.76 -0.5 976,394 + -1.2 976,394 + -1.1 976,394 + -1.1 976,395 - -2.5 976,395 - -1.8 976,395 - -2.3 976,398 + -0.5 976,398 + -1.0 976,398 + -0.9 976,399 - -1.9 976,399 - -1.3 976,433 - -3.0 976,433 - -1.1 976,448 - -2.5 976,454 + -2.8 976,454 + +0.9 976,454 + -0.5 976,454 + +1.0 976,454 + -0.5 976,454 + -0.5 976,455 - +1.2 976,455 - -0.8 976,455 - -3.1 976,467 + +3.2 976,468 - -1.5 976,472 + -0.5 976,472 + +0.5 976,472 + -0.3 976,472 + -2.1 976,473 - -0.3 976,473 - +1.9 976,473 - -0.9 976,473 - -2.7 976,473 - -2.6 976,473 - +2.4 976,489 + -0.7 976,489 + +0.8 976,489 + +0.1 976,549 + +0.2 976,549 + -1.3 976,550 - +0.6 976,550 - +1.1 976,550 - +0.3 976,550 - -0.5 976,550 - -2.8 976,550 - +0.9 976,563 + +1.1 976,567 + +1.8 976,568 - +0.5 976,568 - +1.3 976,673 + Sama_0792 0.20 +0.1 976,691 + Sama_0792 0.22 +1.0 976,691 + Sama_0792 0.22 -1.7 976,691 + Sama_0792 0.22 -0.9 976,691 + Sama_0792 0.22 +0.5 976,691 + Sama_0792 0.22 +3.5 976,691 + Sama_0792 0.22 +1.9 976,692 - Sama_0792 0.23 +1.4 976,692 - Sama_0792 0.23 +1.3 976,692 - Sama_0792 0.23 +1.4 976,692 - Sama_0792 0.23 +0.1 976,692 - Sama_0792 0.23 +2.5 976,737 - Sama_0792 0.30 +1.7 976,802 + Sama_0792 0.40 +1.5 976,802 + Sama_0792 0.40 -0.7 976,802 + Sama_0792 0.40 +0.3 976,803 - Sama_0792 0.40 +1.4 976,803 - Sama_0792 0.40 +0.8 976,803 - Sama_0792 0.40 +0.1 976,803 - Sama_0792 0.40 +1.5 976,823 + Sama_0792 0.43 -0.3 976,823 + Sama_0792 0.43 +0.9 976,824 - Sama_0792 0.43 +2.6 976,824 - Sama_0792 0.43 +0.4 976,824 - Sama_0792 0.43 +2.0 976,824 - Sama_0792 0.43 +0.2 976,824 - Sama_0792 0.43 +4.7 976,824 - Sama_0792 0.43 +0.2 976,824 - Sama_0792 0.43 +1.5 976,893 - Sama_0792 0.54 +0.5 976,893 - Sama_0792 0.54 +2.2 976,893 - Sama_0792 0.54 +1.0 976,893 - Sama_0792 0.54 +1.9 976,897 - Sama_0792 0.55 +2.6 976,897 - Sama_0792 0.55 +1.9 976,941 + Sama_0792 0.62 +3.5 976,942 - Sama_0792 0.62 +2.6 976,942 - Sama_0792 0.62 +1.2 976,942 - Sama_0792 0.62 +3.2 976,942 - Sama_0792 0.62 -0.6
Or see this region's nucleotide sequence