Strain Fitness in Shewanella amazonensis SB2B around Sama_0784

Experiment: Motility assay, center cut sample 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_0783 and Sama_0784 overlap by 29 nucleotidesSama_0784 and Sama_0785 are separated by 10 nucleotidesSama_0785 and Sama_0786 are separated by 69 nucleotides Sama_0783: Sama_0783 - GGDEF domain-containing protein (RefSeq), at 965,648 to 967,426 _0783 Sama_0784: Sama_0784 - hypothetical protein (RefSeq), at 967,398 to 967,634 _0784 Sama_0785: Sama_0785 - uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase (RefSeq), at 967,645 to 968,490 _0785 Sama_0786: Sama_0786 - acetyltransferase (RefSeq), at 968,560 to 969,069 _0786 Position (kb) 967 968Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 966.420 kb on + strand, within Sama_0783at 966.442 kb on - strand, within Sama_0783at 966.442 kb on - strand, within Sama_0783at 966.448 kb on + strand, within Sama_0783at 966.448 kb on + strand, within Sama_0783at 966.448 kb on + strand, within Sama_0783at 966.449 kb on - strand, within Sama_0783at 966.449 kb on - strand, within Sama_0783at 966.449 kb on - strand, within Sama_0783at 966.450 kb on + strand, within Sama_0783at 966.450 kb on + strand, within Sama_0783at 966.450 kb on + strand, within Sama_0783at 966.450 kb on + strand, within Sama_0783at 966.450 kb on + strand, within Sama_0783at 966.450 kb on + strand, within Sama_0783at 966.450 kb on + strand, within Sama_0783at 966.450 kb on + strand, within Sama_0783at 966.450 kb on + strand, within Sama_0783at 966.451 kb on - strand, within Sama_0783at 966.451 kb on - strand, within Sama_0783at 966.451 kb on - strand, within Sama_0783at 966.451 kb on - strand, within Sama_0783at 966.451 kb on - strand, within Sama_0783at 966.451 kb on - strand, within Sama_0783at 966.492 kb on + strand, within Sama_0783at 966.492 kb on + strand, within Sama_0783at 966.552 kb on + strand, within Sama_0783at 966.553 kb on + strand, within Sama_0783at 966.553 kb on - strand, within Sama_0783at 966.557 kb on + strand, within Sama_0783at 966.558 kb on - strand, within Sama_0783at 966.565 kb on + strand, within Sama_0783at 966.620 kb on + strand, within Sama_0783at 966.620 kb on + strand, within Sama_0783at 966.621 kb on - strand, within Sama_0783at 966.628 kb on + strand, within Sama_0783at 966.629 kb on - strand, within Sama_0783at 966.629 kb on - strand, within Sama_0783at 966.630 kb on + strand, within Sama_0783at 966.630 kb on + strand, within Sama_0783at 966.630 kb on + strand, within Sama_0783at 966.630 kb on + strand, within Sama_0783at 966.630 kb on + strand, within Sama_0783at 966.631 kb on - strand, within Sama_0783at 966.642 kb on - strand, within Sama_0783at 966.654 kb on + strand, within Sama_0783at 966.669 kb on - strand, within Sama_0783at 966.681 kb on + strand, within Sama_0783at 966.682 kb on - strand, within Sama_0783at 966.682 kb on - strand, within Sama_0783at 966.689 kb on + strand, within Sama_0783at 966.689 kb on + strand, within Sama_0783at 966.689 kb on + strand, within Sama_0783at 966.689 kb on + strand, within Sama_0783at 966.689 kb on + strand, within Sama_0783at 966.689 kb on + strand, within Sama_0783at 966.690 kb on - strand, within Sama_0783at 966.690 kb on - strand, within Sama_0783at 966.692 kb on + strand, within Sama_0783at 966.692 kb on + strand, within Sama_0783at 966.692 kb on + strand, within Sama_0783at 966.692 kb on + strand, within Sama_0783at 966.692 kb on + strand, within Sama_0783at 966.692 kb on + strand, within Sama_0783at 966.692 kb on + strand, within Sama_0783at 966.692 kb on + strand, within Sama_0783at 966.693 kb on - strand, within Sama_0783at 966.693 kb on - strand, within Sama_0783at 966.693 kb on - strand, within Sama_0783at 966.725 kb on + strand, within Sama_0783at 966.725 kb on + strand, within Sama_0783at 966.726 kb on - strand, within Sama_0783at 966.726 kb on - strand, within Sama_0783at 966.728 kb on + strand, within Sama_0783at 966.731 kb on + strand, within Sama_0783at 966.731 kb on + strand, within Sama_0783at 966.731 kb on + strand, within Sama_0783at 966.732 kb on - strand, within Sama_0783at 966.732 kb on - strand, within Sama_0783at 966.732 kb on - strand, within Sama_0783at 966.744 kb on + strand, within Sama_0783at 966.744 kb on + strand, within Sama_0783at 966.744 kb on + strand, within Sama_0783at 966.836 kb on - strand, within Sama_0783at 966.836 kb on - strand, within Sama_0783at 966.839 kb on + strand, within Sama_0783at 966.840 kb on - strand, within Sama_0783at 966.840 kb on - strand, within Sama_0783at 966.847 kb on + strand, within Sama_0783at 966.848 kb on - strand, within Sama_0783at 966.857 kb on + strand, within Sama_0783at 966.858 kb on - strand, within Sama_0783at 966.862 kb on + strand, within Sama_0783at 966.911 kb on + strand, within Sama_0783at 966.917 kb on + strand, within Sama_0783at 966.918 kb on - strand, within Sama_0783at 966.918 kb on - strand, within Sama_0783at 966.935 kb on + strand, within Sama_0783at 966.935 kb on + strand, within Sama_0783at 966.960 kb on + strand, within Sama_0783at 966.961 kb on - strand, within Sama_0783at 966.961 kb on - strand, within Sama_0783at 966.961 kb on - strand, within Sama_0783at 966.994 kb on + strand, within Sama_0783at 966.995 kb on - strand, within Sama_0783at 966.995 kb on - strand, within Sama_0783at 967.031 kb on - strand, within Sama_0783at 967.085 kb on - strand, within Sama_0783at 967.100 kb on + strand, within Sama_0783at 967.100 kb on + strand, within Sama_0783at 967.100 kb on + strand, within Sama_0783at 967.114 kb on + strand, within Sama_0783at 967.115 kb on - strand, within Sama_0783at 967.152 kb on + strand, within Sama_0783at 967.152 kb on + strand, within Sama_0783at 967.153 kb on - strand, within Sama_0783at 967.161 kb on + strand, within Sama_0783at 967.162 kb on - strand, within Sama_0783at 967.162 kb on - strand, within Sama_0783at 967.162 kb on - strand, within Sama_0783at 967.195 kb on + strand, within Sama_0783at 967.195 kb on + strand, within Sama_0783at 967.195 kb on + strand, within Sama_0783at 967.196 kb on - strand, within Sama_0783at 967.205 kb on + strand, within Sama_0783at 967.206 kb on - strand, within Sama_0783at 967.206 kb on - strand, within Sama_0783at 967.206 kb on - strand, within Sama_0783at 967.210 kb on - strand, within Sama_0783at 967.219 kb on - strand, within Sama_0783at 967.230 kb on + strand, within Sama_0783at 967.231 kb on - strand, within Sama_0783at 967.234 kb on + strand, within Sama_0783at 967.234 kb on + strand, within Sama_0783at 967.234 kb on + strand, within Sama_0783at 967.234 kb on + strand, within Sama_0783at 967.235 kb on - strand, within Sama_0783at 967.235 kb on - strand, within Sama_0783at 967.235 kb on - strand, within Sama_0783at 967.259 kb on + strandat 967.268 kb on + strandat 967.268 kb on + strandat 967.268 kb on + strandat 967.269 kb on - strandat 967.269 kb on - strandat 967.269 kb on - strandat 967.269 kb on - strandat 967.286 kb on + strandat 967.287 kb on - strandat 967.294 kb on + strandat 967.295 kb on - strandat 967.323 kb on - strandat 967.406 kb on + strandat 967.491 kb on + strand, within Sama_0784at 967.491 kb on + strand, within Sama_0784at 967.491 kb on + strand, within Sama_0784at 967.491 kb on + strand, within Sama_0784at 967.491 kb on + strand, within Sama_0784at 967.491 kb on + strand, within Sama_0784at 967.491 kb on + strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.492 kb on - strand, within Sama_0784at 967.545 kb on + strand, within Sama_0784at 967.545 kb on + strand, within Sama_0784at 967.546 kb on - strand, within Sama_0784at 967.637 kb on + strandat 967.638 kb on - strandat 967.638 kb on - strandat 967.647 kb on - strandat 967.681 kb on + strandat 967.682 kb on - strandat 967.682 kb on - strandat 967.851 kb on + strand, within Sama_0785at 967.880 kb on + strand, within Sama_0785at 967.880 kb on + strand, within Sama_0785at 967.899 kb on + strand, within Sama_0785at 967.900 kb on - strand, within Sama_0785at 967.900 kb on - strand, within Sama_0785at 967.918 kb on + strand, within Sama_0785at 967.918 kb on + strand, within Sama_0785at 967.919 kb on - strand, within Sama_0785at 967.919 kb on - strand, within Sama_0785at 967.919 kb on - strand, within Sama_0785at 968.039 kb on + strand, within Sama_0785at 968.039 kb on + strand, within Sama_0785at 968.039 kb on + strand, within Sama_0785at 968.040 kb on - strand, within Sama_0785at 968.040 kb on - strand, within Sama_0785at 968.108 kb on + strand, within Sama_0785at 968.108 kb on + strand, within Sama_0785at 968.179 kb on - strand, within Sama_0785at 968.219 kb on + strand, within Sama_0785at 968.219 kb on + strand, within Sama_0785at 968.220 kb on - strand, within Sama_0785at 968.220 kb on - strand, within Sama_0785at 968.220 kb on - strand, within Sama_0785at 968.285 kb on + strand, within Sama_0785at 968.286 kb on - strand, within Sama_0785at 968.315 kb on + strand, within Sama_0785at 968.315 kb on + strand, within Sama_0785at 968.316 kb on - strand, within Sama_0785at 968.395 kb on + strand, within Sama_0785at 968.437 kb on + strandat 968.437 kb on + strandat 968.437 kb on + strandat 968.437 kb on + strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.438 kb on - strandat 968.510 kb on + strandat 968.510 kb on + strandat 968.510 kb on + strandat 968.511 kb on - strandat 968.511 kb on - strandat 968.511 kb on - strandat 968.514 kb on + strandat 968.528 kb on - strandat 968.592 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1
remove
966,420 + Sama_0783 0.43 +0.7
966,442 - Sama_0783 0.45 +0.5
966,442 - Sama_0783 0.45 -0.0
966,448 + Sama_0783 0.45 +4.4
966,448 + Sama_0783 0.45 -1.8
966,448 + Sama_0783 0.45 +0.3
966,449 - Sama_0783 0.45 +0.1
966,449 - Sama_0783 0.45 +0.3
966,449 - Sama_0783 0.45 +0.5
966,450 + Sama_0783 0.45 +0.6
966,450 + Sama_0783 0.45 -1.3
966,450 + Sama_0783 0.45 +1.5
966,450 + Sama_0783 0.45 +1.1
966,450 + Sama_0783 0.45 +2.7
966,450 + Sama_0783 0.45 -1.5
966,450 + Sama_0783 0.45 -0.6
966,450 + Sama_0783 0.45 -1.7
966,450 + Sama_0783 0.45 -2.3
966,451 - Sama_0783 0.45 -1.9
966,451 - Sama_0783 0.45 +1.0
966,451 - Sama_0783 0.45 -0.7
966,451 - Sama_0783 0.45 +0.8
966,451 - Sama_0783 0.45 -0.7
966,451 - Sama_0783 0.45 +0.7
966,492 + Sama_0783 0.47 +0.7
966,492 + Sama_0783 0.47 -2.2
966,552 + Sama_0783 0.51 -0.2
966,553 + Sama_0783 0.51 -1.3
966,553 - Sama_0783 0.51 -0.5
966,557 + Sama_0783 0.51 +2.1
966,558 - Sama_0783 0.51 -0.5
966,565 + Sama_0783 0.52 -2.6
966,620 + Sama_0783 0.55 +2.7
966,620 + Sama_0783 0.55 -0.5
966,621 - Sama_0783 0.55 -0.7
966,628 + Sama_0783 0.55 -0.7
966,629 - Sama_0783 0.55 +1.3
966,629 - Sama_0783 0.55 -1.2
966,630 + Sama_0783 0.55 +0.1
966,630 + Sama_0783 0.55 +1.0
966,630 + Sama_0783 0.55 +0.6
966,630 + Sama_0783 0.55 -1.5
966,630 + Sama_0783 0.55 +0.1
966,631 - Sama_0783 0.55 +0.5
966,642 - Sama_0783 0.56 +0.8
966,654 + Sama_0783 0.57 +0.8
966,669 - Sama_0783 0.57 +0.5
966,681 + Sama_0783 0.58 +1.5
966,682 - Sama_0783 0.58 -0.1
966,682 - Sama_0783 0.58 -2.1
966,689 + Sama_0783 0.59 +0.9
966,689 + Sama_0783 0.59 -0.7
966,689 + Sama_0783 0.59 +1.2
966,689 + Sama_0783 0.59 +0.5
966,689 + Sama_0783 0.59 -1.1
966,689 + Sama_0783 0.59 +0.1
966,690 - Sama_0783 0.59 +1.5
966,690 - Sama_0783 0.59 -1.5
966,692 + Sama_0783 0.59 +0.6
966,692 + Sama_0783 0.59 -1.5
966,692 + Sama_0783 0.59 +0.9
966,692 + Sama_0783 0.59 +1.2
966,692 + Sama_0783 0.59 -1.8
966,692 + Sama_0783 0.59 -1.1
966,692 + Sama_0783 0.59 -0.4
966,692 + Sama_0783 0.59 -0.4
966,693 - Sama_0783 0.59 -1.1
966,693 - Sama_0783 0.59 -0.6
966,693 - Sama_0783 0.59 +0.7
966,725 + Sama_0783 0.61 +0.3
966,725 + Sama_0783 0.61 -2.5
966,726 - Sama_0783 0.61 +0.1
966,726 - Sama_0783 0.61 +0.3
966,728 + Sama_0783 0.61 -1.7
966,731 + Sama_0783 0.61 -0.5
966,731 + Sama_0783 0.61 -1.1
966,731 + Sama_0783 0.61 -1.3
966,732 - Sama_0783 0.61 +1.0
966,732 - Sama_0783 0.61 +0.4
966,732 - Sama_0783 0.61 -0.5
966,744 + Sama_0783 0.62 +0.9
966,744 + Sama_0783 0.62 +0.1
966,744 + Sama_0783 0.62 -1.4
966,836 - Sama_0783 0.67 +0.5
966,836 - Sama_0783 0.67 -0.1
966,839 + Sama_0783 0.67 +1.9
966,840 - Sama_0783 0.67 -0.0
966,840 - Sama_0783 0.67 +0.4
966,847 + Sama_0783 0.67 +0.5
966,848 - Sama_0783 0.67 -0.4
966,857 + Sama_0783 0.68 -0.5
966,858 - Sama_0783 0.68 +1.1
966,862 + Sama_0783 0.68 +0.5
966,911 + Sama_0783 0.71 -2.1
966,917 + Sama_0783 0.71 -1.8
966,918 - Sama_0783 0.71 -1.8
966,918 - Sama_0783 0.71 +1.3
966,935 + Sama_0783 0.72 +0.3
966,935 + Sama_0783 0.72 -0.9
966,960 + Sama_0783 0.74 -0.5
966,961 - Sama_0783 0.74 +3.9
966,961 - Sama_0783 0.74 -0.9
966,961 - Sama_0783 0.74 -1.8
966,994 + Sama_0783 0.76 +1.4
966,995 - Sama_0783 0.76 -0.8
966,995 - Sama_0783 0.76 -0.5
967,031 - Sama_0783 0.78 +1.9
967,085 - Sama_0783 0.81 +1.5
967,100 + Sama_0783 0.82 -0.9
967,100 + Sama_0783 0.82 -0.1
967,100 + Sama_0783 0.82 +1.5
967,114 + Sama_0783 0.82 +0.6
967,115 - Sama_0783 0.82 -2.4
967,152 + Sama_0783 0.85 -2.1
967,152 + Sama_0783 0.85 -3.1
967,153 - Sama_0783 0.85 -2.5
967,161 + Sama_0783 0.85 -2.4
967,162 - Sama_0783 0.85 +0.5
967,162 - Sama_0783 0.85 -1.2
967,162 - Sama_0783 0.85 +0.0
967,195 + Sama_0783 0.87 +1.5
967,195 + Sama_0783 0.87 -2.9
967,195 + Sama_0783 0.87 -0.5
967,196 - Sama_0783 0.87 -0.3
967,205 + Sama_0783 0.88 +1.8
967,206 - Sama_0783 0.88 -2.1
967,206 - Sama_0783 0.88 +1.7
967,206 - Sama_0783 0.88 -0.7
967,210 - Sama_0783 0.88 -0.2
967,219 - Sama_0783 0.88 -0.1
967,230 + Sama_0783 0.89 -2.1
967,231 - Sama_0783 0.89 -0.8
967,234 + Sama_0783 0.89 -0.1
967,234 + Sama_0783 0.89 -1.8
967,234 + Sama_0783 0.89 +1.0
967,234 + Sama_0783 0.89 -1.3
967,235 - Sama_0783 0.89 -0.4
967,235 - Sama_0783 0.89 +0.1
967,235 - Sama_0783 0.89 -0.3
967,259 + -0.5
967,268 + +2.0
967,268 + -0.7
967,268 + -0.5
967,269 - -0.8
967,269 - +1.2
967,269 - -0.3
967,269 - +1.5
967,286 + -0.5
967,287 - -0.1
967,294 + -0.8
967,295 - +1.0
967,323 - -2.1
967,406 + -0.5
967,491 + Sama_0784 0.39 -3.0
967,491 + Sama_0784 0.39 -0.0
967,491 + Sama_0784 0.39 +0.5
967,491 + Sama_0784 0.39 -1.3
967,491 + Sama_0784 0.39 -0.4
967,491 + Sama_0784 0.39 -0.9
967,491 + Sama_0784 0.39 -1.6
967,492 - Sama_0784 0.40 -2.3
967,492 - Sama_0784 0.40 -0.6
967,492 - Sama_0784 0.40 -1.9
967,492 - Sama_0784 0.40 -1.8
967,492 - Sama_0784 0.40 -2.8
967,492 - Sama_0784 0.40 -2.4
967,492 - Sama_0784 0.40 -0.5
967,492 - Sama_0784 0.40 -1.0
967,492 - Sama_0784 0.40 +0.5
967,492 - Sama_0784 0.40 -2.2
967,492 - Sama_0784 0.40 -0.7
967,492 - Sama_0784 0.40 -1.1
967,545 + Sama_0784 0.62 -1.7
967,545 + Sama_0784 0.62 +0.7
967,546 - Sama_0784 0.62 -2.7
967,637 + -0.4
967,638 - -0.9
967,638 - +1.1
967,647 - -2.0
967,681 + -0.7
967,682 - -0.2
967,682 - +1.1
967,851 + Sama_0785 0.24 +1.1
967,880 + Sama_0785 0.28 +1.2
967,880 + Sama_0785 0.28 +0.2
967,899 + Sama_0785 0.30 +0.9
967,900 - Sama_0785 0.30 +0.9
967,900 - Sama_0785 0.30 +1.0
967,918 + Sama_0785 0.32 -0.2
967,918 + Sama_0785 0.32 -1.3
967,919 - Sama_0785 0.32 -0.5
967,919 - Sama_0785 0.32 -0.2
967,919 - Sama_0785 0.32 -1.9
968,039 + Sama_0785 0.47 -0.9
968,039 + Sama_0785 0.47 -1.3
968,039 + Sama_0785 0.47 -2.0
968,040 - Sama_0785 0.47 +0.3
968,040 - Sama_0785 0.47 -0.7
968,108 + Sama_0785 0.55 +0.3
968,108 + Sama_0785 0.55 +1.5
968,179 - Sama_0785 0.63 -1.5
968,219 + Sama_0785 0.68 -0.4
968,219 + Sama_0785 0.68 -0.3
968,220 - Sama_0785 0.68 -1.6
968,220 - Sama_0785 0.68 -1.5
968,220 - Sama_0785 0.68 +0.2
968,285 + Sama_0785 0.76 +1.2
968,286 - Sama_0785 0.76 -0.9
968,315 + Sama_0785 0.79 +1.3
968,315 + Sama_0785 0.79 -2.0
968,316 - Sama_0785 0.79 -0.9
968,395 + Sama_0785 0.89 -2.3
968,437 + +0.4
968,437 + -0.8
968,437 + -1.3
968,437 + +1.9
968,438 - -0.8
968,438 - -1.0
968,438 - -1.9
968,438 - +0.3
968,438 - -0.0
968,438 - +0.2
968,438 - -0.4
968,438 - -1.3
968,510 + -0.5
968,510 + -1.7
968,510 + +1.3
968,511 - +0.9
968,511 - +3.2
968,511 - -1.5
968,514 + +0.6
968,528 - -1.6
968,592 - +0.2

Or see this region's nucleotide sequence