Strain Fitness in Shewanella amazonensis SB2B around Sama_0771

Experiment: Motility assay, center cut sample 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0769 and Sama_0770 are separated by 45 nucleotidesSama_0770 and Sama_0771 are separated by 7 nucleotidesSama_0771 and Sama_0772 are separated by 95 nucleotides Sama_0769: Sama_0769 - UDP-N-acetylmuramate (RefSeq), at 952,789 to 954,165 _0769 Sama_0770: Sama_0770 - aromatic acid decarboxylase (RefSeq), at 954,211 to 954,852 _0770 Sama_0771: Sama_0771 - hypoxanthine phosphoribosyltransferase (RefSeq), at 954,860 to 955,390 _0771 Sama_0772: Sama_0772 - ABC transporter, ATP-binding protein (RefSeq), at 955,486 to 956,445 _0772 Position (kb) 954 955 956Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 953.922 kb on + strand, within Sama_0769at 953.922 kb on + strand, within Sama_0769at 953.951 kb on - strand, within Sama_0769at 953.965 kb on - strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.022 kb on + strand, within Sama_0769at 954.023 kb on - strand, within Sama_0769at 954.023 kb on - strand, within Sama_0769at 954.023 kb on - strand, within Sama_0769at 954.038 kb on + strandat 954.038 kb on + strandat 954.038 kb on + strandat 954.038 kb on + strandat 954.038 kb on + strandat 954.814 kb on + strandat 954.814 kb on + strandat 954.815 kb on - strandat 954.856 kb on + strandat 954.857 kb on - strandat 954.857 kb on - strandat 954.931 kb on + strand, within Sama_0771at 954.945 kb on - strand, within Sama_0771at 954.945 kb on - strand, within Sama_0771at 954.945 kb on - strand, within Sama_0771at 955.048 kb on + strand, within Sama_0771at 955.048 kb on + strand, within Sama_0771at 955.049 kb on - strand, within Sama_0771at 955.064 kb on + strand, within Sama_0771at 955.064 kb on + strand, within Sama_0771at 955.065 kb on - strand, within Sama_0771at 955.065 kb on - strand, within Sama_0771at 955.144 kb on + strand, within Sama_0771at 955.160 kb on - strand, within Sama_0771at 955.246 kb on + strand, within Sama_0771at 955.266 kb on + strand, within Sama_0771at 955.334 kb on + strand, within Sama_0771at 955.351 kb on + strandat 955.352 kb on - strandat 955.361 kb on + strandat 955.361 kb on + strandat 955.361 kb on + strandat 955.362 kb on - strandat 955.362 kb on - strandat 955.362 kb on - strandat 955.363 kb on + strandat 955.363 kb on + strandat 955.364 kb on - strandat 955.435 kb on + strandat 955.435 kb on + strandat 955.441 kb on - strandat 955.441 kb on - strandat 955.530 kb on + strandat 955.540 kb on + strandat 955.541 kb on - strandat 955.541 kb on - strandat 955.635 kb on + strand, within Sama_0772at 955.636 kb on - strand, within Sama_0772at 955.643 kb on + strand, within Sama_0772at 955.643 kb on + strand, within Sama_0772at 955.643 kb on + strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.650 kb on + strand, within Sama_0772at 955.651 kb on - strand, within Sama_0772at 955.674 kb on + strand, within Sama_0772at 955.685 kb on + strand, within Sama_0772at 955.685 kb on + strand, within Sama_0772at 955.685 kb on + strand, within Sama_0772at 955.737 kb on + strand, within Sama_0772at 955.784 kb on + strand, within Sama_0772at 955.813 kb on + strand, within Sama_0772at 955.814 kb on - strand, within Sama_0772at 955.814 kb on - strand, within Sama_0772at 955.891 kb on - strand, within Sama_0772at 956.067 kb on + strand, within Sama_0772at 956.068 kb on - strand, within Sama_0772at 956.083 kb on + strand, within Sama_0772at 956.084 kb on - strand, within Sama_0772at 956.116 kb on - strand, within Sama_0772at 956.261 kb on + strand, within Sama_0772at 956.262 kb on - strand, within Sama_0772at 956.262 kb on - strand, within Sama_0772at 956.343 kb on - strand, within Sama_0772at 956.343 kb on - strand, within Sama_0772at 956.364 kb on + strandat 956.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1
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953,922 + Sama_0769 0.82 -0.4
953,922 + Sama_0769 0.82 +1.1
953,951 - Sama_0769 0.84 -1.9
953,965 - Sama_0769 0.85 -2.1
954,022 + Sama_0769 0.90 -2.9
954,022 + Sama_0769 0.90 -1.0
954,022 + Sama_0769 0.90 -0.1
954,022 + Sama_0769 0.90 -1.1
954,022 + Sama_0769 0.90 -2.1
954,022 + Sama_0769 0.90 -1.8
954,023 - Sama_0769 0.90 +0.6
954,023 - Sama_0769 0.90 -1.4
954,023 - Sama_0769 0.90 -1.4
954,038 + -1.3
954,038 + -1.6
954,038 + -2.0
954,038 + -0.3
954,038 + -1.8
954,814 + +1.0
954,814 + -0.8
954,815 - -1.1
954,856 + +2.7
954,857 - +0.4
954,857 - -1.7
954,931 + Sama_0771 0.13 -2.2
954,945 - Sama_0771 0.16 -2.7
954,945 - Sama_0771 0.16 -0.1
954,945 - Sama_0771 0.16 -0.5
955,048 + Sama_0771 0.35 +0.3
955,048 + Sama_0771 0.35 -1.0
955,049 - Sama_0771 0.36 +0.1
955,064 + Sama_0771 0.38 +0.1
955,064 + Sama_0771 0.38 +1.5
955,065 - Sama_0771 0.39 -0.1
955,065 - Sama_0771 0.39 +0.3
955,144 + Sama_0771 0.53 -2.8
955,160 - Sama_0771 0.56 +0.2
955,246 + Sama_0771 0.73 +0.4
955,266 + Sama_0771 0.76 -0.4
955,334 + Sama_0771 0.89 +0.4
955,351 + +0.1
955,352 - +3.6
955,361 + +0.6
955,361 + -1.1
955,361 + -1.3
955,362 - -0.2
955,362 - -2.5
955,362 - +1.4
955,363 + -0.7
955,363 + -1.8
955,364 - -0.7
955,435 + -1.9
955,435 + +1.3
955,441 - +0.6
955,441 - -0.2
955,530 + -0.7
955,540 + +0.8
955,541 - -2.3
955,541 - -0.6
955,635 + Sama_0772 0.16 +2.9
955,636 - Sama_0772 0.16 -2.1
955,643 + Sama_0772 0.16 +1.0
955,643 + Sama_0772 0.16 -0.1
955,643 + Sama_0772 0.16 +0.1
955,644 - Sama_0772 0.16 -0.1
955,644 - Sama_0772 0.16 +0.9
955,644 - Sama_0772 0.16 +0.6
955,644 - Sama_0772 0.16 -0.2
955,650 + Sama_0772 0.17 -0.8
955,651 - Sama_0772 0.17 +0.0
955,674 + Sama_0772 0.20 -0.0
955,685 + Sama_0772 0.21 -1.2
955,685 + Sama_0772 0.21 +1.0
955,685 + Sama_0772 0.21 +0.9
955,737 + Sama_0772 0.26 -1.3
955,784 + Sama_0772 0.31 -2.6
955,813 + Sama_0772 0.34 -1.6
955,814 - Sama_0772 0.34 +0.9
955,814 - Sama_0772 0.34 -0.8
955,891 - Sama_0772 0.42 -1.2
956,067 + Sama_0772 0.61 -1.6
956,068 - Sama_0772 0.61 +0.4
956,083 + Sama_0772 0.62 -1.4
956,084 - Sama_0772 0.62 -1.8
956,116 - Sama_0772 0.66 +0.2
956,261 + Sama_0772 0.81 +1.1
956,262 - Sama_0772 0.81 -2.3
956,262 - Sama_0772 0.81 +0.3
956,343 - Sama_0772 0.89 -0.5
956,343 - Sama_0772 0.89 +2.3
956,364 + -2.0
956,365 - +0.7

Or see this region's nucleotide sequence