Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0642 and Sama_0643 are separated by 141 nucleotides Sama_0643 and Sama_0644 are separated by 83 nucleotides
Sama_0642: Sama_0642 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (RefSeq), at 797,333 to 798,097
_0642
Sama_0643: Sama_0643 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 798,239 to 799,675
_0643
Sama_0644: Sama_0644 - magnesium transporter, putative (RefSeq), at 799,759 to 800,724
_0644
Position (kb) 798
799
800 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 797.248 kb on + strand at 797.248 kb on + strand at 797.249 kb on - strand at 797.249 kb on - strand at 797.254 kb on + strand at 797.254 kb on + strand at 797.254 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.258 kb on - strand at 797.258 kb on - strand at 797.258 kb on - strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.262 kb on - strand at 797.262 kb on - strand at 797.262 kb on - strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.267 kb on - strand at 797.267 kb on - strand at 797.288 kb on + strand at 797.298 kb on + strand at 797.303 kb on + strand at 797.303 kb on + strand at 797.320 kb on + strand at 797.345 kb on + strand at 797.382 kb on + strand at 797.383 kb on - strand at 797.392 kb on + strand at 797.392 kb on + strand at 797.395 kb on + strand at 797.462 kb on + strand, within Sama_0642 at 797.462 kb on + strand, within Sama_0642 at 797.462 kb on + strand, within Sama_0642 at 797.489 kb on + strand, within Sama_0642 at 797.489 kb on + strand, within Sama_0642 at 797.490 kb on - strand, within Sama_0642 at 797.769 kb on + strand, within Sama_0642 at 797.769 kb on + strand, within Sama_0642 at 797.946 kb on + strand, within Sama_0642 at 797.957 kb on + strand, within Sama_0642 at 797.988 kb on - strand, within Sama_0642 at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.098 kb on + strand at 798.099 kb on - strand at 798.099 kb on - strand at 798.113 kb on + strand at 798.114 kb on - strand at 798.203 kb on + strand at 798.206 kb on + strand at 798.234 kb on + strand at 798.234 kb on + strand at 798.262 kb on + strand at 798.262 kb on + strand at 798.262 kb on + strand at 798.327 kb on + strand at 798.328 kb on - strand at 798.328 kb on - strand at 798.381 kb on + strand at 798.424 kb on + strand, within Sama_0643 at 798.424 kb on + strand, within Sama_0643 at 798.425 kb on - strand, within Sama_0643 at 798.557 kb on + strand, within Sama_0643 at 798.557 kb on + strand, within Sama_0643 at 798.558 kb on - strand, within Sama_0643 at 798.646 kb on - strand, within Sama_0643 at 798.663 kb on + strand, within Sama_0643 at 798.663 kb on + strand, within Sama_0643 at 798.682 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.707 kb on + strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.708 kb on - strand, within Sama_0643 at 798.835 kb on + strand, within Sama_0643 at 798.871 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.997 kb on + strand, within Sama_0643 at 798.997 kb on + strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643 at 799.143 kb on + strand, within Sama_0643 at 799.144 kb on - strand, within Sama_0643 at 799.144 kb on - strand, within Sama_0643 at 799.181 kb on - strand, within Sama_0643 at 799.181 kb on - strand, within Sama_0643 at 799.181 kb on - strand, within Sama_0643 at 799.363 kb on + strand, within Sama_0643 at 799.375 kb on + strand, within Sama_0643 at 799.375 kb on + strand, within Sama_0643 at 799.375 kb on + strand, within Sama_0643 at 799.376 kb on - strand, within Sama_0643 at 799.376 kb on - strand, within Sama_0643 at 799.376 kb on - strand, within Sama_0643 at 799.379 kb on - strand, within Sama_0643 at 799.431 kb on + strand, within Sama_0643 at 799.431 kb on + strand, within Sama_0643 at 799.431 kb on + strand, within Sama_0643 at 799.431 kb on + strand, within Sama_0643 at 799.431 kb on + strand, within Sama_0643 at 799.432 kb on - strand, within Sama_0643 at 799.432 kb on - strand, within Sama_0643 at 799.432 kb on - strand, within Sama_0643 at 799.432 kb on - strand, within Sama_0643 at 799.432 kb on - strand, within Sama_0643 at 799.495 kb on - strand, within Sama_0643 at 799.495 kb on - strand, within Sama_0643 at 799.495 kb on - strand, within Sama_0643 at 799.534 kb on + strand at 799.534 kb on + strand at 799.534 kb on + strand at 799.534 kb on + strand at 799.534 kb on + strand at 799.535 kb on - strand at 799.561 kb on + strand at 799.578 kb on + strand at 799.578 kb on + strand at 799.578 kb on + strand at 799.578 kb on + strand at 799.578 kb on + strand at 799.578 kb on + strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.645 kb on + strand at 799.645 kb on + strand at 799.646 kb on - strand at 799.646 kb on - strand at 799.650 kb on + strand at 799.650 kb on + strand at 799.650 kb on + strand at 799.651 kb on - strand at 799.705 kb on + strand at 799.705 kb on + strand at 799.705 kb on + strand at 799.705 kb on + strand at 799.705 kb on + strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.799 kb on - strand at 799.916 kb on - strand, within Sama_0644 at 799.916 kb on - strand, within Sama_0644 at 799.916 kb on - strand, within Sama_0644 at 799.940 kb on + strand, within Sama_0644 at 799.953 kb on + strand, within Sama_0644 at 799.953 kb on + strand, within Sama_0644 at 800.085 kb on + strand, within Sama_0644 at 800.085 kb on + strand, within Sama_0644 at 800.086 kb on - strand, within Sama_0644 at 800.118 kb on + strand, within Sama_0644 at 800.119 kb on - strand, within Sama_0644 at 800.144 kb on + strand, within Sama_0644 at 800.144 kb on + strand, within Sama_0644 at 800.262 kb on + strand, within Sama_0644 at 800.263 kb on - strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.285 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.345 kb on - strand, within Sama_0644 at 800.357 kb on - strand, within Sama_0644 at 800.410 kb on - strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.467 kb on + strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.603 kb on + strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.622 kb on + strand, within Sama_0644 at 800.622 kb on + strand, within Sama_0644 at 800.623 kb on - strand, within Sama_0644 at 800.623 kb on - strand, within Sama_0644
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 797,248 + -0.5 797,248 + -1.5 797,249 - +0.3 797,249 - -0.2 797,254 + -2.2 797,254 + +2.8 797,254 + -0.7 797,257 + -1.0 797,257 + +1.7 797,257 + -0.5 797,257 + -0.1 797,257 + +1.7 797,257 + -0.2 797,258 - -0.9 797,258 - -0.1 797,258 - -1.4 797,261 + +0.2 797,261 + -0.1 797,261 + +0.9 797,261 + -3.0 797,261 + -2.8 797,261 + +1.9 797,261 + -1.3 797,262 - -1.2 797,262 - -0.5 797,262 - +0.3 797,264 + +0.2 797,264 + -1.5 797,264 + +0.6 797,264 + +0.8 797,264 + -1.1 797,266 + -1.4 797,266 + +2.9 797,266 + -0.7 797,266 + -1.1 797,267 - -2.5 797,267 - +0.9 797,288 + +1.3 797,298 + -0.6 797,303 + +0.3 797,303 + +0.7 797,320 + +0.2 797,345 + +0.1 797,382 + -1.5 797,383 - -0.3 797,392 + -2.4 797,392 + -1.8 797,395 + -1.1 797,462 + Sama_0642 0.17 -0.9 797,462 + Sama_0642 0.17 +0.3 797,462 + Sama_0642 0.17 -1.2 797,489 + Sama_0642 0.20 -1.2 797,489 + Sama_0642 0.20 -1.1 797,490 - Sama_0642 0.21 +1.8 797,769 + Sama_0642 0.57 +1.6 797,769 + Sama_0642 0.57 +0.1 797,946 + Sama_0642 0.80 +0.6 797,957 + Sama_0642 0.82 +0.3 797,988 - Sama_0642 0.86 -0.4 798,095 + -1.0 798,095 + -3.0 798,095 + +2.7 798,095 + +1.6 798,095 + -1.7 798,096 - +1.6 798,096 - -0.8 798,096 - +0.5 798,096 - -1.9 798,098 + +1.0 798,099 - +0.1 798,099 - -1.4 798,113 + +0.3 798,114 - -0.1 798,203 + +0.6 798,206 + +1.9 798,234 + +0.8 798,234 + -2.4 798,262 + -3.4 798,262 + -0.1 798,262 + -2.5 798,327 + -0.9 798,328 - -1.5 798,328 - -1.8 798,381 + +0.2 798,424 + Sama_0643 0.13 -1.5 798,424 + Sama_0643 0.13 -0.7 798,425 - Sama_0643 0.13 -1.2 798,557 + Sama_0643 0.22 -3.7 798,557 + Sama_0643 0.22 -3.0 798,558 - Sama_0643 0.22 -0.1 798,646 - Sama_0643 0.28 -2.5 798,663 + Sama_0643 0.30 +0.3 798,663 + Sama_0643 0.30 -1.2 798,682 + Sama_0643 0.31 -2.0 798,707 + Sama_0643 0.33 -2.0 798,707 + Sama_0643 0.33 -0.7 798,707 + Sama_0643 0.33 -2.0 798,707 + Sama_0643 0.33 -2.2 798,707 + Sama_0643 0.33 -1.9 798,708 - Sama_0643 0.33 -2.6 798,708 - Sama_0643 0.33 -1.1 798,708 - Sama_0643 0.33 -0.9 798,708 - Sama_0643 0.33 -0.3 798,835 + Sama_0643 0.41 -0.7 798,871 + Sama_0643 0.44 -1.5 798,919 + Sama_0643 0.47 -1.8 798,919 + Sama_0643 0.47 -3.0 798,919 + Sama_0643 0.47 -0.5 798,919 + Sama_0643 0.47 -1.5 798,929 + Sama_0643 0.48 +0.3 798,929 + Sama_0643 0.48 -0.6 798,929 + Sama_0643 0.48 +1.9 798,929 + Sama_0643 0.48 -1.8 798,929 + Sama_0643 0.48 -2.7 798,929 + Sama_0643 0.48 -0.5 798,929 + Sama_0643 0.48 +0.3 798,929 + Sama_0643 0.48 -0.9 798,930 - Sama_0643 0.48 -0.9 798,930 - Sama_0643 0.48 +1.9 798,930 - Sama_0643 0.48 -0.9 798,930 - Sama_0643 0.48 +3.4 798,930 - Sama_0643 0.48 -1.2 798,997 + Sama_0643 0.53 -0.3 798,997 + Sama_0643 0.53 -0.2 798,998 - Sama_0643 0.53 -1.2 798,998 - Sama_0643 0.53 +0.6 798,998 - Sama_0643 0.53 -1.5 799,143 + Sama_0643 0.63 -0.9 799,144 - Sama_0643 0.63 -1.0 799,144 - Sama_0643 0.63 -0.7 799,181 - Sama_0643 0.66 +0.5 799,181 - Sama_0643 0.66 +0.3 799,181 - Sama_0643 0.66 -1.4 799,363 + Sama_0643 0.78 +0.3 799,375 + Sama_0643 0.79 -1.2 799,375 + Sama_0643 0.79 -2.6 799,375 + Sama_0643 0.79 +1.3 799,376 - Sama_0643 0.79 -1.4 799,376 - Sama_0643 0.79 -0.2 799,376 - Sama_0643 0.79 -1.3 799,379 - Sama_0643 0.79 -0.4 799,431 + Sama_0643 0.83 -0.7 799,431 + Sama_0643 0.83 -1.2 799,431 + Sama_0643 0.83 -1.0 799,431 + Sama_0643 0.83 -0.9 799,431 + Sama_0643 0.83 -2.2 799,432 - Sama_0643 0.83 -1.2 799,432 - Sama_0643 0.83 -1.4 799,432 - Sama_0643 0.83 -0.1 799,432 - Sama_0643 0.83 -0.9 799,432 - Sama_0643 0.83 -0.6 799,495 - Sama_0643 0.87 -2.7 799,495 - Sama_0643 0.87 -1.5 799,495 - Sama_0643 0.87 -0.5 799,534 + -2.0 799,534 + +1.3 799,534 + +1.0 799,534 + -0.8 799,534 + -0.9 799,535 - -2.0 799,561 + -2.1 799,578 + -1.5 799,578 + -2.5 799,578 + -1.1 799,578 + -1.6 799,578 + -1.4 799,578 + -2.9 799,579 - -2.1 799,579 - +0.7 799,579 - -0.1 799,579 - -0.1 799,579 - -1.2 799,579 - -2.0 799,579 - -1.2 799,579 - -3.9 799,582 + -1.4 799,582 + -0.7 799,582 + -1.3 799,582 + -1.9 799,582 + -0.8 799,582 + -1.2 799,582 + +0.3 799,582 + -2.2 799,582 + +1.9 799,582 + +1.9 799,582 + +0.8 799,582 + +0.4 799,582 + -3.1 799,582 + -1.4 799,583 - -2.2 799,583 - -1.6 799,583 - -1.7 799,583 - -1.8 799,583 - -2.2 799,583 - -0.8 799,583 - -0.4 799,583 - -0.9 799,583 - -2.9 799,645 + -0.2 799,645 + -1.0 799,646 - -1.7 799,646 - -0.7 799,650 + -1.0 799,650 + -1.1 799,650 + -0.7 799,651 - -0.9 799,705 + +0.3 799,705 + -2.2 799,705 + +0.6 799,705 + -1.7 799,705 + -2.5 799,706 - +0.3 799,706 - -2.5 799,706 - +0.1 799,706 - -0.9 799,706 - -2.1 799,706 - +0.5 799,706 - +0.2 799,799 - -0.5 799,916 - Sama_0644 0.16 +1.3 799,916 - Sama_0644 0.16 -0.7 799,916 - Sama_0644 0.16 -0.9 799,940 + Sama_0644 0.19 +1.9 799,953 + Sama_0644 0.20 +1.0 799,953 + Sama_0644 0.20 +1.4 800,085 + Sama_0644 0.34 +0.2 800,085 + Sama_0644 0.34 +0.9 800,086 - Sama_0644 0.34 +0.3 800,118 + Sama_0644 0.37 +0.3 800,119 - Sama_0644 0.37 +0.9 800,144 + Sama_0644 0.40 -2.0 800,144 + Sama_0644 0.40 -1.4 800,262 + Sama_0644 0.52 +1.1 800,263 - Sama_0644 0.52 +1.7 800,284 + Sama_0644 0.54 -1.5 800,284 + Sama_0644 0.54 +1.0 800,284 + Sama_0644 0.54 +0.8 800,285 - Sama_0644 0.54 -0.5 800,308 - Sama_0644 0.57 +1.7 800,308 - Sama_0644 0.57 +0.3 800,308 - Sama_0644 0.57 -3.0 800,308 - Sama_0644 0.57 +1.1 800,344 + Sama_0644 0.61 +0.8 800,344 + Sama_0644 0.61 -0.1 800,344 + Sama_0644 0.61 +1.5 800,344 + Sama_0644 0.61 +0.5 800,344 + Sama_0644 0.61 +2.2 800,345 - Sama_0644 0.61 -2.3 800,357 - Sama_0644 0.62 +0.5 800,410 - Sama_0644 0.67 +0.3 800,424 + Sama_0644 0.69 -0.7 800,424 + Sama_0644 0.69 +0.3 800,424 + Sama_0644 0.69 -0.0 800,467 + Sama_0644 0.73 +0.8 800,468 - Sama_0644 0.73 -0.7 800,468 - Sama_0644 0.73 +0.5 800,468 - Sama_0644 0.73 -1.4 800,603 + Sama_0644 0.87 -0.5 800,604 - Sama_0644 0.87 -1.7 800,604 - Sama_0644 0.87 +0.2 800,604 - Sama_0644 0.87 +0.8 800,604 - Sama_0644 0.87 -1.8 800,604 - Sama_0644 0.87 +0.4 800,604 - Sama_0644 0.87 -0.9 800,604 - Sama_0644 0.87 -1.1 800,622 + Sama_0644 0.89 -1.0 800,622 + Sama_0644 0.89 -1.0 800,623 - Sama_0644 0.89 +0.5 800,623 - Sama_0644 0.89 -0.9
Or see this region's nucleotide sequence