Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0635 and Sama_0636 are separated by 174 nucleotides Sama_0636 and Sama_0637 are separated by 67 nucleotides Sama_0637 and Sama_0638 overlap by 10 nucleotides
Sama_0635: Sama_0635 - serine protease (RefSeq), at 787,020 to 792,071
_0635
Sama_0636: Sama_0636 - chromate transporter (RefSeq), at 792,246 to 793,391
_0636
Sama_0637: Sama_0637 - hypothetical protein (RefSeq), at 793,459 to 794,064
_0637
Sama_0638: Sama_0638 - TPR domain-containing protein (RefSeq), at 794,055 to 795,434
_0638
Position (kb) 792
793
794 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 791.323 kb on - strand, within Sama_0635 at 791.351 kb on + strand, within Sama_0635 at 791.351 kb on + strand, within Sama_0635 at 791.351 kb on + strand, within Sama_0635 at 791.352 kb on - strand, within Sama_0635 at 791.352 kb on - strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.406 kb on - strand, within Sama_0635 at 791.406 kb on - strand, within Sama_0635 at 791.406 kb on - strand, within Sama_0635 at 791.406 kb on - strand, within Sama_0635 at 791.409 kb on + strand, within Sama_0635 at 791.410 kb on - strand, within Sama_0635 at 791.410 kb on - strand, within Sama_0635 at 791.410 kb on - strand, within Sama_0635 at 791.416 kb on - strand, within Sama_0635 at 791.433 kb on + strand, within Sama_0635 at 791.433 kb on + strand, within Sama_0635 at 791.433 kb on + strand, within Sama_0635 at 791.433 kb on + strand, within Sama_0635 at 791.433 kb on + strand, within Sama_0635 at 791.434 kb on - strand, within Sama_0635 at 791.435 kb on + strand, within Sama_0635 at 791.435 kb on + strand, within Sama_0635 at 791.435 kb on + strand, within Sama_0635 at 791.435 kb on + strand, within Sama_0635 at 791.435 kb on + strand, within Sama_0635 at 791.436 kb on - strand, within Sama_0635 at 791.436 kb on - strand, within Sama_0635 at 791.436 kb on - strand, within Sama_0635 at 791.449 kb on + strand, within Sama_0635 at 791.449 kb on + strand, within Sama_0635 at 791.450 kb on - strand, within Sama_0635 at 791.460 kb on - strand, within Sama_0635 at 791.499 kb on + strand, within Sama_0635 at 791.499 kb on + strand, within Sama_0635 at 791.500 kb on - strand, within Sama_0635 at 791.506 kb on - strand, within Sama_0635 at 791.596 kb on + strand at 791.647 kb on + strand at 791.658 kb on - strand at 791.719 kb on - strand at 791.759 kb on + strand at 791.822 kb on + strand at 791.822 kb on + strand at 791.822 kb on + strand at 791.823 kb on - strand at 791.843 kb on - strand at 791.872 kb on + strand at 791.872 kb on + strand at 791.872 kb on + strand at 791.873 kb on - strand at 791.873 kb on - strand at 791.873 kb on - strand at 791.873 kb on - strand at 791.873 kb on - strand at 791.915 kb on + strand at 791.926 kb on + strand at 791.926 kb on + strand at 791.926 kb on + strand at 791.926 kb on + strand at 791.927 kb on - strand at 791.927 kb on - strand at 791.927 kb on - strand at 791.927 kb on - strand at 791.927 kb on - strand at 791.927 kb on - strand at 791.929 kb on + strand at 791.929 kb on + strand at 791.929 kb on + strand at 791.929 kb on + strand at 791.930 kb on - strand at 792.069 kb on + strand at 792.069 kb on + strand at 792.069 kb on + strand at 792.070 kb on - strand at 792.070 kb on - strand at 792.099 kb on + strand at 792.099 kb on + strand at 792.099 kb on + strand at 792.100 kb on - strand at 792.100 kb on - strand at 792.180 kb on - strand at 792.180 kb on - strand at 792.208 kb on + strand at 792.208 kb on + strand at 792.208 kb on + strand at 792.209 kb on - strand at 792.245 kb on + strand at 792.245 kb on + strand at 792.245 kb on + strand at 792.245 kb on + strand at 792.245 kb on + strand at 792.245 kb on + strand at 792.246 kb on - strand at 792.246 kb on - strand at 792.246 kb on - strand at 792.246 kb on - strand at 792.318 kb on + strand at 792.318 kb on + strand at 792.319 kb on - strand at 792.479 kb on + strand, within Sama_0636 at 792.489 kb on - strand, within Sama_0636 at 792.489 kb on - strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.514 kb on - strand, within Sama_0636 at 792.514 kb on - strand, within Sama_0636 at 792.514 kb on - strand, within Sama_0636 at 792.514 kb on - strand, within Sama_0636 at 792.514 kb on - strand, within Sama_0636 at 792.581 kb on + strand, within Sama_0636 at 792.582 kb on - strand, within Sama_0636 at 792.582 kb on - strand, within Sama_0636 at 792.665 kb on + strand, within Sama_0636 at 792.665 kb on + strand, within Sama_0636 at 792.665 kb on + strand, within Sama_0636 at 792.666 kb on - strand, within Sama_0636 at 792.682 kb on + strand, within Sama_0636 at 792.682 kb on + strand, within Sama_0636 at 792.682 kb on + strand, within Sama_0636 at 792.682 kb on + strand, within Sama_0636 at 792.683 kb on - strand, within Sama_0636 at 792.724 kb on + strand, within Sama_0636 at 792.825 kb on - strand, within Sama_0636 at 792.849 kb on + strand, within Sama_0636 at 792.849 kb on + strand, within Sama_0636 at 793.005 kb on + strand, within Sama_0636 at 793.005 kb on + strand, within Sama_0636 at 793.005 kb on + strand, within Sama_0636 at 793.041 kb on - strand, within Sama_0636 at 793.115 kb on + strand, within Sama_0636 at 793.135 kb on + strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.210 kb on + strand, within Sama_0636 at 793.211 kb on - strand, within Sama_0636 at 793.249 kb on - strand, within Sama_0636 at 793.249 kb on - strand, within Sama_0636 at 793.321 kb on + strand at 793.407 kb on + strand at 793.443 kb on - strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.562 kb on + strand, within Sama_0637 at 793.562 kb on + strand, within Sama_0637 at 793.562 kb on + strand, within Sama_0637 at 793.562 kb on + strand, within Sama_0637 at 793.562 kb on + strand, within Sama_0637 at 793.562 kb on + strand, within Sama_0637 at 793.563 kb on - strand, within Sama_0637 at 793.563 kb on - strand, within Sama_0637 at 793.563 kb on - strand, within Sama_0637 at 793.563 kb on - strand, within Sama_0637 at 793.565 kb on + strand, within Sama_0637 at 793.565 kb on + strand, within Sama_0637 at 793.566 kb on - strand, within Sama_0637 at 793.566 kb on - strand, within Sama_0637 at 793.566 kb on - strand, within Sama_0637 at 793.566 kb on - strand, within Sama_0637 at 793.617 kb on - strand, within Sama_0637 at 793.617 kb on - strand, within Sama_0637 at 793.617 kb on - strand, within Sama_0637 at 793.617 kb on - strand, within Sama_0637 at 793.625 kb on + strand, within Sama_0637 at 793.625 kb on + strand, within Sama_0637 at 793.625 kb on + strand, within Sama_0637 at 793.626 kb on - strand, within Sama_0637 at 793.626 kb on - strand, within Sama_0637 at 793.626 kb on - strand, within Sama_0637 at 793.737 kb on + strand, within Sama_0637 at 793.797 kb on + strand, within Sama_0637 at 793.798 kb on - strand, within Sama_0637 at 793.798 kb on - strand, within Sama_0637 at 793.798 kb on - strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.802 kb on - strand, within Sama_0637 at 793.802 kb on - strand, within Sama_0637 at 793.802 kb on - strand, within Sama_0637 at 793.802 kb on - strand, within Sama_0637 at 793.802 kb on - strand, within Sama_0637 at 793.914 kb on + strand, within Sama_0637 at 793.980 kb on - strand, within Sama_0637 at 793.980 kb on - strand, within Sama_0637 at 794.052 kb on + strand at 794.052 kb on + strand at 794.066 kb on + strand at 794.066 kb on + strand at 794.087 kb on - strand at 794.087 kb on - strand at 794.145 kb on + strand at 794.145 kb on + strand at 794.145 kb on + strand at 794.145 kb on + strand at 794.145 kb on + strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.151 kb on + strand at 794.151 kb on + strand at 794.151 kb on + strand at 794.151 kb on + strand at 794.152 kb on - strand at 794.152 kb on - strand at 794.152 kb on - strand at 794.178 kb on - strand at 794.186 kb on - strand at 794.186 kb on - strand at 794.186 kb on - strand at 794.250 kb on + strand, within Sama_0638 at 794.250 kb on + strand, within Sama_0638 at 794.268 kb on + strand, within Sama_0638 at 794.268 kb on + strand, within Sama_0638 at 794.268 kb on + strand, within Sama_0638 at 794.269 kb on - strand, within Sama_0638 at 794.269 kb on - strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.368 kb on + strand, within Sama_0638 at 794.369 kb on - strand, within Sama_0638 at 794.369 kb on - strand, within Sama_0638 at 794.369 kb on - strand, within Sama_0638
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 791,323 - Sama_0635 0.85 +1.4 791,351 + Sama_0635 0.86 -1.3 791,351 + Sama_0635 0.86 +0.8 791,351 + Sama_0635 0.86 -1.7 791,352 - Sama_0635 0.86 -1.9 791,352 - Sama_0635 0.86 +0.2 791,405 + Sama_0635 0.87 -0.1 791,405 + Sama_0635 0.87 +0.7 791,405 + Sama_0635 0.87 +1.7 791,405 + Sama_0635 0.87 -0.6 791,405 + Sama_0635 0.87 -1.0 791,405 + Sama_0635 0.87 -0.6 791,406 - Sama_0635 0.87 -2.2 791,406 - Sama_0635 0.87 -2.2 791,406 - Sama_0635 0.87 -0.3 791,406 - Sama_0635 0.87 +0.5 791,409 + Sama_0635 0.87 +2.7 791,410 - Sama_0635 0.87 -0.6 791,410 - Sama_0635 0.87 +1.1 791,410 - Sama_0635 0.87 +0.9 791,416 - Sama_0635 0.87 -0.7 791,433 + Sama_0635 0.87 -0.5 791,433 + Sama_0635 0.87 -0.2 791,433 + Sama_0635 0.87 +1.9 791,433 + Sama_0635 0.87 +0.2 791,433 + Sama_0635 0.87 -1.9 791,434 - Sama_0635 0.87 +1.2 791,435 + Sama_0635 0.87 -1.8 791,435 + Sama_0635 0.87 -1.2 791,435 + Sama_0635 0.87 +0.3 791,435 + Sama_0635 0.87 +0.3 791,435 + Sama_0635 0.87 -2.5 791,436 - Sama_0635 0.87 -1.9 791,436 - Sama_0635 0.87 +0.6 791,436 - Sama_0635 0.87 -0.2 791,449 + Sama_0635 0.88 -0.1 791,449 + Sama_0635 0.88 -0.0 791,450 - Sama_0635 0.88 +0.7 791,460 - Sama_0635 0.88 +0.1 791,499 + Sama_0635 0.89 +1.0 791,499 + Sama_0635 0.89 -0.8 791,500 - Sama_0635 0.89 -1.9 791,506 - Sama_0635 0.89 -2.3 791,596 + -1.6 791,647 + +0.2 791,658 - -1.5 791,719 - -1.8 791,759 + +0.8 791,822 + +0.6 791,822 + +1.5 791,822 + +1.1 791,823 - -3.4 791,843 - -2.1 791,872 + +1.3 791,872 + +0.2 791,872 + -1.7 791,873 - -1.0 791,873 - -2.0 791,873 - +1.4 791,873 - -2.3 791,873 - +0.7 791,915 + -0.7 791,926 + -1.0 791,926 + +0.9 791,926 + -0.1 791,926 + -2.0 791,927 - +1.7 791,927 - -2.0 791,927 - +1.3 791,927 - -1.3 791,927 - +2.3 791,927 - -0.6 791,929 + -1.5 791,929 + -0.7 791,929 + -1.1 791,929 + +0.1 791,930 - +2.6 792,069 + +1.1 792,069 + -1.8 792,069 + +0.7 792,070 - +0.7 792,070 - +0.7 792,099 + +1.4 792,099 + -0.4 792,099 + -0.1 792,100 - +1.3 792,100 - -0.7 792,180 - +0.6 792,180 - -2.1 792,208 + -0.2 792,208 + -0.2 792,208 + -0.5 792,209 - +1.1 792,245 + -0.2 792,245 + -1.4 792,245 + -0.0 792,245 + -0.1 792,245 + -0.8 792,245 + +1.1 792,246 - +0.2 792,246 - -0.4 792,246 - +1.5 792,246 - -0.1 792,318 + +0.1 792,318 + +0.1 792,319 - +0.3 792,479 + Sama_0636 0.20 -1.6 792,489 - Sama_0636 0.21 +1.1 792,489 - Sama_0636 0.21 -2.4 792,513 + Sama_0636 0.23 +0.7 792,513 + Sama_0636 0.23 -1.9 792,513 + Sama_0636 0.23 -0.5 792,513 + Sama_0636 0.23 -1.7 792,513 + Sama_0636 0.23 -1.3 792,513 + Sama_0636 0.23 -2.0 792,513 + Sama_0636 0.23 -0.9 792,513 + Sama_0636 0.23 +2.6 792,513 + Sama_0636 0.23 +0.8 792,513 + Sama_0636 0.23 -0.9 792,513 + Sama_0636 0.23 +0.3 792,514 - Sama_0636 0.23 -1.7 792,514 - Sama_0636 0.23 -1.7 792,514 - Sama_0636 0.23 -0.4 792,514 - Sama_0636 0.23 +0.7 792,514 - Sama_0636 0.23 +0.0 792,581 + Sama_0636 0.29 +0.5 792,582 - Sama_0636 0.29 +0.1 792,582 - Sama_0636 0.29 -1.9 792,665 + Sama_0636 0.37 -2.1 792,665 + Sama_0636 0.37 -0.8 792,665 + Sama_0636 0.37 +1.8 792,666 - Sama_0636 0.37 -1.4 792,682 + Sama_0636 0.38 +0.8 792,682 + Sama_0636 0.38 +0.7 792,682 + Sama_0636 0.38 -1.5 792,682 + Sama_0636 0.38 +1.3 792,683 - Sama_0636 0.38 -0.9 792,724 + Sama_0636 0.42 +0.4 792,825 - Sama_0636 0.51 +1.9 792,849 + Sama_0636 0.53 -0.1 792,849 + Sama_0636 0.53 +0.0 793,005 + Sama_0636 0.66 -0.1 793,005 + Sama_0636 0.66 -0.6 793,005 + Sama_0636 0.66 +1.5 793,041 - Sama_0636 0.69 -1.1 793,115 + Sama_0636 0.76 +0.0 793,135 + Sama_0636 0.78 -1.2 793,136 - Sama_0636 0.78 -1.2 793,136 - Sama_0636 0.78 -1.2 793,136 - Sama_0636 0.78 -1.4 793,136 - Sama_0636 0.78 +0.3 793,136 - Sama_0636 0.78 -1.8 793,136 - Sama_0636 0.78 -1.2 793,210 + Sama_0636 0.84 +1.2 793,211 - Sama_0636 0.84 -1.2 793,249 - Sama_0636 0.88 -0.4 793,249 - Sama_0636 0.88 +0.4 793,321 + -0.9 793,407 + -1.3 793,443 - -1.5 793,460 + -0.1 793,460 + -0.5 793,460 + -1.7 793,460 + -0.2 793,460 + +1.2 793,460 + +0.5 793,460 + +1.7 793,460 + -0.9 793,460 + -0.1 793,460 + -2.5 793,460 + +0.8 793,461 - -2.8 793,461 - -1.6 793,461 - +0.3 793,461 - +1.1 793,461 - -2.2 793,461 - +1.0 793,461 - +3.9 793,461 - -0.3 793,461 - -0.6 793,461 - -2.9 793,562 + Sama_0637 0.17 +0.6 793,562 + Sama_0637 0.17 -0.1 793,562 + Sama_0637 0.17 +0.5 793,562 + Sama_0637 0.17 -3.1 793,562 + Sama_0637 0.17 -0.2 793,562 + Sama_0637 0.17 +0.3 793,563 - Sama_0637 0.17 +0.2 793,563 - Sama_0637 0.17 -1.1 793,563 - Sama_0637 0.17 +1.4 793,563 - Sama_0637 0.17 -2.4 793,565 + Sama_0637 0.17 -0.9 793,565 + Sama_0637 0.17 -2.2 793,566 - Sama_0637 0.18 +1.0 793,566 - Sama_0637 0.18 -2.4 793,566 - Sama_0637 0.18 -0.2 793,566 - Sama_0637 0.18 -1.5 793,617 - Sama_0637 0.26 +0.6 793,617 - Sama_0637 0.26 +0.5 793,617 - Sama_0637 0.26 -1.5 793,617 - Sama_0637 0.26 -0.1 793,625 + Sama_0637 0.27 -1.0 793,625 + Sama_0637 0.27 +4.2 793,625 + Sama_0637 0.27 -0.1 793,626 - Sama_0637 0.28 +0.3 793,626 - Sama_0637 0.28 -1.4 793,626 - Sama_0637 0.28 +1.1 793,737 + Sama_0637 0.46 -0.9 793,797 + Sama_0637 0.56 +0.3 793,798 - Sama_0637 0.56 +0.3 793,798 - Sama_0637 0.56 -1.5 793,798 - Sama_0637 0.56 -0.9 793,801 + Sama_0637 0.56 -0.7 793,801 + Sama_0637 0.56 +1.1 793,801 + Sama_0637 0.56 +0.9 793,801 + Sama_0637 0.56 -0.1 793,801 + Sama_0637 0.56 -2.1 793,801 + Sama_0637 0.56 -1.1 793,802 - Sama_0637 0.57 -0.8 793,802 - Sama_0637 0.57 -0.0 793,802 - Sama_0637 0.57 -0.2 793,802 - Sama_0637 0.57 +1.3 793,802 - Sama_0637 0.57 +0.3 793,914 + Sama_0637 0.75 -1.4 793,980 - Sama_0637 0.86 -0.4 793,980 - Sama_0637 0.86 -3.8 794,052 + +1.4 794,052 + +1.1 794,066 + +1.9 794,066 + -1.3 794,087 - -0.1 794,087 - +0.9 794,145 + +0.5 794,145 + +1.6 794,145 + -0.4 794,145 + -0.7 794,145 + +0.8 794,146 - +0.8 794,146 - -0.1 794,146 - +0.3 794,146 - -0.9 794,146 - -1.0 794,146 - -0.2 794,146 - -0.1 794,146 - -0.7 794,146 - -0.2 794,146 - -1.3 794,146 - +1.2 794,151 + +0.3 794,151 + -0.9 794,151 + -1.8 794,151 + -3.1 794,152 - -2.0 794,152 - -1.1 794,152 - -1.1 794,178 - -1.2 794,186 - +0.5 794,186 - -1.8 794,186 - -0.2 794,250 + Sama_0638 0.14 +0.7 794,250 + Sama_0638 0.14 -0.2 794,268 + Sama_0638 0.15 +0.1 794,268 + Sama_0638 0.15 -1.3 794,268 + Sama_0638 0.15 +3.0 794,269 - Sama_0638 0.16 -2.3 794,269 - Sama_0638 0.16 -1.3 794,271 + Sama_0638 0.16 +0.6 794,271 + Sama_0638 0.16 -0.0 794,271 + Sama_0638 0.16 -0.0 794,271 + Sama_0638 0.16 +0.1 794,271 + Sama_0638 0.16 -2.7 794,271 + Sama_0638 0.16 -0.1 794,271 + Sama_0638 0.16 +0.6 794,271 + Sama_0638 0.16 -1.0 794,272 - Sama_0638 0.16 -0.9 794,272 - Sama_0638 0.16 +0.2 794,272 - Sama_0638 0.16 +0.9 794,272 - Sama_0638 0.16 -0.3 794,272 - Sama_0638 0.16 +0.7 794,272 - Sama_0638 0.16 -1.7 794,272 - Sama_0638 0.16 -1.0 794,272 - Sama_0638 0.16 -1.2 794,368 + Sama_0638 0.23 -1.7 794,369 - Sama_0638 0.23 -1.4 794,369 - Sama_0638 0.23 +1.1 794,369 - Sama_0638 0.23 -2.2
Or see this region's nucleotide sequence