Strain Fitness in Shewanella amazonensis SB2B around Sama_0446

Experiment: Motility assay, center cut sample 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0445 and Sama_0446 are separated by 110 nucleotidesSama_0446 and rpmE are separated by 147 nucleotidesrpmE and Sama_0448 are separated by 502 nucleotides Sama_0445: Sama_0445 - primosomal protein N' (RefSeq), at 549,686 to 551,893 _0445 Sama_0446: Sama_0446 - hypothetical protein (RefSeq), at 552,004 to 552,729 _0446 Sama_0447: rpmE - 50S ribosomal protein L31 (RefSeq), at 552,877 to 553,089 rpmE Sama_0448: Sama_0448 - malate dehydrogenase (RefSeq), at 553,592 to 554,839 _0448 Position (kb) 552 553Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 551.882 kb on - strandat 551.882 kb on - strandat 551.889 kb on + strandat 551.890 kb on - strandat 551.890 kb on - strandat 551.912 kb on - strandat 551.912 kb on - strandat 551.917 kb on - strandat 551.917 kb on - strandat 551.917 kb on - strandat 551.917 kb on - strandat 551.945 kb on + strandat 551.946 kb on - strandat 551.946 kb on - strandat 551.946 kb on - strandat 551.946 kb on - strandat 551.946 kb on - strandat 551.946 kb on - strandat 551.946 kb on - strandat 551.958 kb on + strandat 551.958 kb on + strandat 551.959 kb on - strandat 551.959 kb on - strandat 551.962 kb on + strandat 551.962 kb on + strandat 551.962 kb on + strandat 551.962 kb on + strandat 551.962 kb on + strandat 551.962 kb on + strandat 551.962 kb on + strandat 551.962 kb on + strandat 551.962 kb on + strandat 551.962 kb on + strandat 551.963 kb on - strandat 551.963 kb on - strandat 551.963 kb on - strandat 551.963 kb on - strandat 551.963 kb on - strandat 551.963 kb on - strandat 551.963 kb on - strandat 551.963 kb on - strandat 552.084 kb on + strand, within Sama_0446at 552.090 kb on + strand, within Sama_0446at 552.090 kb on + strand, within Sama_0446at 552.091 kb on - strand, within Sama_0446at 552.091 kb on - strand, within Sama_0446at 552.091 kb on - strand, within Sama_0446at 552.115 kb on + strand, within Sama_0446at 552.135 kb on + strand, within Sama_0446at 552.135 kb on + strand, within Sama_0446at 552.135 kb on + strand, within Sama_0446at 552.135 kb on + strand, within Sama_0446at 552.135 kb on + strand, within Sama_0446at 552.136 kb on - strand, within Sama_0446at 552.136 kb on - strand, within Sama_0446at 552.136 kb on - strand, within Sama_0446at 552.136 kb on - strand, within Sama_0446at 552.231 kb on + strand, within Sama_0446at 552.231 kb on + strand, within Sama_0446at 552.231 kb on + strand, within Sama_0446at 552.231 kb on + strand, within Sama_0446at 552.231 kb on + strand, within Sama_0446at 552.231 kb on + strand, within Sama_0446at 552.232 kb on - strand, within Sama_0446at 552.232 kb on - strand, within Sama_0446at 552.232 kb on - strand, within Sama_0446at 552.232 kb on - strand, within Sama_0446at 552.232 kb on - strand, within Sama_0446at 552.295 kb on + strand, within Sama_0446at 552.295 kb on + strand, within Sama_0446at 552.295 kb on + strand, within Sama_0446at 552.296 kb on - strand, within Sama_0446at 552.296 kb on - strand, within Sama_0446at 552.296 kb on - strand, within Sama_0446at 552.296 kb on - strand, within Sama_0446at 552.319 kb on + strand, within Sama_0446at 552.319 kb on + strand, within Sama_0446at 552.319 kb on + strand, within Sama_0446at 552.319 kb on + strand, within Sama_0446at 552.319 kb on + strand, within Sama_0446at 552.319 kb on + strand, within Sama_0446at 552.319 kb on + strand, within Sama_0446at 552.320 kb on - strand, within Sama_0446at 552.320 kb on - strand, within Sama_0446at 552.320 kb on - strand, within Sama_0446at 552.320 kb on - strand, within Sama_0446at 552.320 kb on - strand, within Sama_0446at 552.321 kb on + strand, within Sama_0446at 552.321 kb on + strand, within Sama_0446at 552.321 kb on + strand, within Sama_0446at 552.321 kb on + strand, within Sama_0446at 552.321 kb on + strand, within Sama_0446at 552.321 kb on + strand, within Sama_0446at 552.321 kb on + strand, within Sama_0446at 552.321 kb on + strand, within Sama_0446at 552.322 kb on - strand, within Sama_0446at 552.322 kb on - strand, within Sama_0446at 552.322 kb on - strand, within Sama_0446at 552.322 kb on - strand, within Sama_0446at 552.322 kb on - strand, within Sama_0446at 552.322 kb on - strand, within Sama_0446at 552.327 kb on + strand, within Sama_0446at 552.328 kb on - strand, within Sama_0446at 552.493 kb on + strand, within Sama_0446at 552.549 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.557 kb on + strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.558 kb on - strand, within Sama_0446at 552.559 kb on + strand, within Sama_0446at 552.560 kb on - strand, within Sama_0446at 552.560 kb on - strand, within Sama_0446at 552.560 kb on - strand, within Sama_0446at 552.560 kb on - strand, within Sama_0446at 552.560 kb on - strand, within Sama_0446at 552.560 kb on - strand, within Sama_0446at 552.560 kb on - strand, within Sama_0446at 552.560 kb on - strand, within Sama_0446at 552.603 kb on + strand, within Sama_0446at 552.603 kb on + strand, within Sama_0446at 552.603 kb on + strand, within Sama_0446at 552.603 kb on + strand, within Sama_0446at 552.639 kb on + strand, within Sama_0446at 552.639 kb on + strand, within Sama_0446at 552.639 kb on + strand, within Sama_0446at 552.639 kb on + strand, within Sama_0446at 552.639 kb on + strand, within Sama_0446at 552.640 kb on - strand, within Sama_0446at 552.640 kb on - strand, within Sama_0446at 552.640 kb on - strand, within Sama_0446at 552.801 kb on + strandat 553.197 kb on + strandat 553.197 kb on + strandat 553.197 kb on + strandat 553.197 kb on + strandat 553.198 kb on - strandat 553.198 kb on - strandat 553.198 kb on - strandat 553.198 kb on - strandat 553.303 kb on + strandat 553.307 kb on + strandat 553.307 kb on + strandat 553.307 kb on + strandat 553.307 kb on + strandat 553.308 kb on - strandat 553.308 kb on - strandat 553.308 kb on - strandat 553.330 kb on + strandat 553.353 kb on + strandat 553.354 kb on - strandat 553.354 kb on - strandat 553.354 kb on - strandat 553.406 kb on + strandat 553.407 kb on - strandat 553.488 kb on - strandat 553.511 kb on + strandat 553.511 kb on + strandat 553.515 kb on - strandat 553.515 kb on - strandat 553.515 kb on - strandat 553.568 kb on - strandat 553.623 kb on - strandat 553.623 kb on - strandat 553.703 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1
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551,882 - +1.3
551,882 - -1.1
551,889 + -0.6
551,890 - +1.7
551,890 - +2.9
551,912 - -1.5
551,912 - -0.8
551,917 - +1.1
551,917 - +1.8
551,917 - -1.1
551,917 - +0.1
551,945 + -3.0
551,946 - +0.5
551,946 - -0.3
551,946 - -0.5
551,946 - +0.4
551,946 - -0.8
551,946 - -2.0
551,946 - -1.5
551,958 + -2.0
551,958 + -2.2
551,959 - -0.3
551,959 - +2.7
551,962 + +1.3
551,962 + +0.4
551,962 + +3.1
551,962 + -0.1
551,962 + -0.3
551,962 + +0.7
551,962 + +0.9
551,962 + +1.7
551,962 + -2.1
551,962 + -1.0
551,963 - -0.6
551,963 - -0.4
551,963 - +1.8
551,963 - +0.9
551,963 - +1.2
551,963 - +2.1
551,963 - -1.6
551,963 - -0.5
552,084 + Sama_0446 0.11 +0.0
552,090 + Sama_0446 0.12 +0.5
552,090 + Sama_0446 0.12 +0.1
552,091 - Sama_0446 0.12 -0.6
552,091 - Sama_0446 0.12 -3.3
552,091 - Sama_0446 0.12 -2.0
552,115 + Sama_0446 0.15 -0.6
552,135 + Sama_0446 0.18 +0.1
552,135 + Sama_0446 0.18 -1.0
552,135 + Sama_0446 0.18 -1.7
552,135 + Sama_0446 0.18 -2.4
552,135 + Sama_0446 0.18 +1.6
552,136 - Sama_0446 0.18 +1.0
552,136 - Sama_0446 0.18 +1.0
552,136 - Sama_0446 0.18 -0.5
552,136 - Sama_0446 0.18 -0.2
552,231 + Sama_0446 0.31 +0.6
552,231 + Sama_0446 0.31 -2.6
552,231 + Sama_0446 0.31 -0.8
552,231 + Sama_0446 0.31 +0.9
552,231 + Sama_0446 0.31 +1.4
552,231 + Sama_0446 0.31 -1.6
552,232 - Sama_0446 0.31 +1.0
552,232 - Sama_0446 0.31 -0.6
552,232 - Sama_0446 0.31 -1.0
552,232 - Sama_0446 0.31 -2.5
552,232 - Sama_0446 0.31 -2.0
552,295 + Sama_0446 0.40 +1.1
552,295 + Sama_0446 0.40 +0.0
552,295 + Sama_0446 0.40 +1.6
552,296 - Sama_0446 0.40 -0.4
552,296 - Sama_0446 0.40 +1.0
552,296 - Sama_0446 0.40 -1.1
552,296 - Sama_0446 0.40 -0.9
552,319 + Sama_0446 0.43 -1.5
552,319 + Sama_0446 0.43 +1.0
552,319 + Sama_0446 0.43 +0.7
552,319 + Sama_0446 0.43 -0.1
552,319 + Sama_0446 0.43 -0.3
552,319 + Sama_0446 0.43 +0.0
552,319 + Sama_0446 0.43 -0.9
552,320 - Sama_0446 0.44 -0.2
552,320 - Sama_0446 0.44 +1.0
552,320 - Sama_0446 0.44 +1.3
552,320 - Sama_0446 0.44 -1.6
552,320 - Sama_0446 0.44 -0.3
552,321 + Sama_0446 0.44 +0.1
552,321 + Sama_0446 0.44 -0.2
552,321 + Sama_0446 0.44 -2.6
552,321 + Sama_0446 0.44 -2.2
552,321 + Sama_0446 0.44 -0.3
552,321 + Sama_0446 0.44 +0.0
552,321 + Sama_0446 0.44 -1.5
552,321 + Sama_0446 0.44 -2.3
552,322 - Sama_0446 0.44 -0.6
552,322 - Sama_0446 0.44 -2.6
552,322 - Sama_0446 0.44 +1.9
552,322 - Sama_0446 0.44 +2.4
552,322 - Sama_0446 0.44 -1.3
552,322 - Sama_0446 0.44 -0.3
552,327 + Sama_0446 0.44 -0.6
552,328 - Sama_0446 0.45 -1.6
552,493 + Sama_0446 0.67 -0.1
552,549 + Sama_0446 0.75 -1.7
552,557 + Sama_0446 0.76 +0.0
552,557 + Sama_0446 0.76 +0.0
552,557 + Sama_0446 0.76 +1.6
552,557 + Sama_0446 0.76 -1.4
552,557 + Sama_0446 0.76 +0.7
552,557 + Sama_0446 0.76 -3.6
552,557 + Sama_0446 0.76 -0.5
552,557 + Sama_0446 0.76 -1.6
552,557 + Sama_0446 0.76 +4.0
552,557 + Sama_0446 0.76 -1.3
552,557 + Sama_0446 0.76 -0.2
552,557 + Sama_0446 0.76 +2.1
552,557 + Sama_0446 0.76 -0.4
552,557 + Sama_0446 0.76 -0.3
552,557 + Sama_0446 0.76 +0.8
552,557 + Sama_0446 0.76 +0.8
552,557 + Sama_0446 0.76 -1.2
552,558 - Sama_0446 0.76 +1.6
552,558 - Sama_0446 0.76 -0.3
552,558 - Sama_0446 0.76 +2.2
552,558 - Sama_0446 0.76 +2.5
552,558 - Sama_0446 0.76 +0.7
552,558 - Sama_0446 0.76 +0.3
552,558 - Sama_0446 0.76 -0.8
552,558 - Sama_0446 0.76 +0.2
552,558 - Sama_0446 0.76 -0.2
552,558 - Sama_0446 0.76 -0.4
552,558 - Sama_0446 0.76 -1.3
552,559 + Sama_0446 0.76 +0.4
552,560 - Sama_0446 0.77 -1.3
552,560 - Sama_0446 0.77 +0.7
552,560 - Sama_0446 0.77 -0.5
552,560 - Sama_0446 0.77 -2.2
552,560 - Sama_0446 0.77 -0.3
552,560 - Sama_0446 0.77 +1.4
552,560 - Sama_0446 0.77 -1.1
552,560 - Sama_0446 0.77 +0.1
552,603 + Sama_0446 0.83 -1.6
552,603 + Sama_0446 0.83 -0.3
552,603 + Sama_0446 0.83 +1.5
552,603 + Sama_0446 0.83 +0.1
552,639 + Sama_0446 0.87 -0.4
552,639 + Sama_0446 0.87 +1.2
552,639 + Sama_0446 0.87 +0.8
552,639 + Sama_0446 0.87 -0.2
552,639 + Sama_0446 0.87 -1.8
552,640 - Sama_0446 0.88 -0.3
552,640 - Sama_0446 0.88 +0.1
552,640 - Sama_0446 0.88 -1.3
552,801 + -0.8
553,197 + +0.4
553,197 + +0.6
553,197 + +1.5
553,197 + +1.1
553,198 - -0.2
553,198 - -0.6
553,198 - -0.7
553,198 - +0.8
553,303 + -0.9
553,307 + -0.9
553,307 + +0.5
553,307 + -1.1
553,307 + +0.4
553,308 - -1.2
553,308 - -0.3
553,308 - +1.0
553,330 + -0.9
553,353 + -1.5
553,354 - +0.9
553,354 - -1.1
553,354 - -1.1
553,406 + -2.1
553,407 - -1.9
553,488 - -2.7
553,511 + -0.2
553,511 + -1.6
553,515 - +0.4
553,515 - -2.4
553,515 - -0.8
553,568 - +0.3
553,623 - -2.0
553,623 - +1.3
553,703 + +0.4

Or see this region's nucleotide sequence