Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0388 and Sama_0389 are separated by 72 nucleotides Sama_0389 and Sama_0390 are separated by 68 nucleotides Sama_0390 and Sama_0391 are separated by 656 nucleotides
Sama_0388: Sama_0388 - putative diguanylate phosphodiesterase (RefSeq), at 480,564 to 483,077
_0388
Sama_0389: Sama_0389 - short chain dehydrogenase (RefSeq), at 483,150 to 483,962
_0389
Sama_0390: Sama_0390 - hypothetical protein (RefSeq), at 484,031 to 484,270
_0390
Sama_0391: Sama_0391 - hypothetical protein (RefSeq), at 484,927 to 485,916
_0391
Position (kb) 484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 483.108 kb on + strand at 483.149 kb on + strand at 483.149 kb on + strand at 483.150 kb on - strand at 483.200 kb on + strand at 483.201 kb on - strand at 483.350 kb on + strand, within Sama_0389 at 483.350 kb on + strand, within Sama_0389 at 483.351 kb on - strand, within Sama_0389 at 483.390 kb on - strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.414 kb on - strand, within Sama_0389 at 483.434 kb on + strand, within Sama_0389 at 483.435 kb on - strand, within Sama_0389 at 483.500 kb on + strand, within Sama_0389 at 483.500 kb on + strand, within Sama_0389 at 483.501 kb on - strand, within Sama_0389 at 483.501 kb on - strand, within Sama_0389 at 483.504 kb on + strand, within Sama_0389 at 483.504 kb on + strand, within Sama_0389 at 483.504 kb on + strand, within Sama_0389 at 483.569 kb on - strand, within Sama_0389 at 483.621 kb on + strand, within Sama_0389 at 483.799 kb on + strand, within Sama_0389 at 483.799 kb on + strand, within Sama_0389 at 483.799 kb on + strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.859 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.922 kb on + strand at 483.922 kb on + strand at 483.922 kb on + strand at 483.923 kb on - strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.979 kb on - strand at 483.979 kb on - strand at 484.221 kb on + strand, within Sama_0390 at 484.235 kb on + strand, within Sama_0390 at 484.236 kb on - strand, within Sama_0390 at 484.237 kb on + strand, within Sama_0390 at 484.238 kb on - strand, within Sama_0390 at 484.238 kb on - strand, within Sama_0390 at 484.277 kb on + strand at 484.278 kb on - strand at 484.278 kb on - strand at 484.278 kb on - strand at 484.278 kb on - strand at 484.281 kb on + strand at 484.281 kb on + strand at 484.281 kb on + strand at 484.282 kb on - strand at 484.282 kb on - strand at 484.302 kb on - strand at 484.302 kb on - strand at 484.302 kb on - strand at 484.313 kb on + strand at 484.313 kb on + strand at 484.313 kb on + strand at 484.313 kb on + strand at 484.314 kb on - strand at 484.314 kb on - strand at 484.314 kb on - strand at 484.322 kb on + strand at 484.322 kb on + strand at 484.323 kb on - strand at 484.323 kb on - strand at 484.395 kb on - strand at 484.406 kb on + strand at 484.416 kb on + strand at 484.417 kb on - strand at 484.438 kb on - strand at 484.438 kb on - strand at 484.476 kb on - strand at 484.544 kb on - strand at 484.625 kb on - strand at 484.631 kb on + strand at 484.632 kb on - strand at 484.642 kb on - strand at 484.669 kb on - strand at 484.669 kb on - strand at 484.719 kb on + strand at 484.725 kb on + strand at 484.734 kb on + strand at 484.735 kb on - strand at 484.778 kb on - strand at 484.779 kb on + strand at 484.780 kb on - strand at 484.785 kb on + strand at 484.790 kb on + strand at 484.790 kb on + strand at 484.790 kb on + strand at 484.792 kb on + strand at 484.792 kb on + strand at 484.792 kb on + strand at 484.793 kb on - strand at 484.793 kb on - strand at 484.802 kb on + strand at 484.808 kb on + strand at 484.959 kb on + strand at 484.960 kb on - strand at 484.962 kb on + strand at 485.006 kb on + strand at 485.007 kb on - strand at 485.007 kb on - strand at 485.011 kb on + strand at 485.012 kb on - strand at 485.019 kb on + strand at 485.059 kb on - strand, within Sama_0391 at 485.089 kb on - strand, within Sama_0391 at 485.132 kb on + strand, within Sama_0391 at 485.132 kb on + strand, within Sama_0391 at 485.152 kb on + strand, within Sama_0391 at 485.152 kb on + strand, within Sama_0391 at 485.152 kb on + strand, within Sama_0391 at 485.152 kb on + strand, within Sama_0391 at 485.152 kb on + strand, within Sama_0391 at 485.152 kb on + strand, within Sama_0391 at 485.152 kb on + strand, within Sama_0391 at 485.153 kb on - strand, within Sama_0391 at 485.153 kb on - strand, within Sama_0391 at 485.153 kb on - strand, within Sama_0391 at 485.153 kb on - strand, within Sama_0391 at 485.153 kb on - strand, within Sama_0391 at 485.153 kb on - strand, within Sama_0391 at 485.157 kb on + strand, within Sama_0391 at 485.157 kb on + strand, within Sama_0391 at 485.157 kb on + strand, within Sama_0391 at 485.158 kb on - strand, within Sama_0391 at 485.158 kb on - strand, within Sama_0391 at 485.158 kb on - strand, within Sama_0391 at 485.192 kb on + strand, within Sama_0391 at 485.192 kb on + strand, within Sama_0391 at 485.192 kb on + strand, within Sama_0391 at 485.192 kb on + strand, within Sama_0391 at 485.192 kb on + strand, within Sama_0391 at 485.192 kb on + strand, within Sama_0391 at 485.192 kb on + strand, within Sama_0391 at 485.192 kb on + strand, within Sama_0391 at 485.193 kb on - strand, within Sama_0391 at 485.193 kb on - strand, within Sama_0391 at 485.193 kb on - strand, within Sama_0391 at 485.193 kb on - strand, within Sama_0391 at 485.193 kb on - strand, within Sama_0391 at 485.193 kb on - strand, within Sama_0391 at 485.193 kb on - strand, within Sama_0391 at 485.193 kb on - strand, within Sama_0391 at 485.207 kb on + strand, within Sama_0391 at 485.207 kb on + strand, within Sama_0391 at 485.208 kb on - strand, within Sama_0391 at 485.266 kb on + strand, within Sama_0391 at 485.266 kb on + strand, within Sama_0391 at 485.267 kb on - strand, within Sama_0391 at 485.267 kb on - strand, within Sama_0391 at 485.267 kb on - strand, within Sama_0391 at 485.267 kb on - strand, within Sama_0391 at 485.267 kb on - strand, within Sama_0391
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 483,108 + -0.3 483,149 + +0.8 483,149 + +0.7 483,150 - +2.3 483,200 + +3.0 483,201 - -0.2 483,350 + Sama_0389 0.25 -2.2 483,350 + Sama_0389 0.25 +0.3 483,351 - Sama_0389 0.25 +1.5 483,390 - Sama_0389 0.30 -1.8 483,413 + Sama_0389 0.32 +1.0 483,413 + Sama_0389 0.32 +0.8 483,413 + Sama_0389 0.32 -2.0 483,413 + Sama_0389 0.32 +0.4 483,413 + Sama_0389 0.32 -0.7 483,414 - Sama_0389 0.32 -0.5 483,434 + Sama_0389 0.35 +1.6 483,435 - Sama_0389 0.35 -1.1 483,500 + Sama_0389 0.43 +1.1 483,500 + Sama_0389 0.43 -1.1 483,501 - Sama_0389 0.43 -0.7 483,501 - Sama_0389 0.43 +0.8 483,504 + Sama_0389 0.44 +1.5 483,504 + Sama_0389 0.44 +0.9 483,504 + Sama_0389 0.44 +1.2 483,569 - Sama_0389 0.52 -1.8 483,621 + Sama_0389 0.58 -1.8 483,799 + Sama_0389 0.80 -0.5 483,799 + Sama_0389 0.80 +0.4 483,799 + Sama_0389 0.80 +3.8 483,800 - Sama_0389 0.80 -0.2 483,800 - Sama_0389 0.80 -1.7 483,800 - Sama_0389 0.80 +0.9 483,800 - Sama_0389 0.80 -0.8 483,800 - Sama_0389 0.80 -1.0 483,800 - Sama_0389 0.80 -1.2 483,859 + Sama_0389 0.87 -0.9 483,863 + Sama_0389 0.88 -0.4 483,863 + Sama_0389 0.88 +1.1 483,863 + Sama_0389 0.88 -1.0 483,863 + Sama_0389 0.88 +0.9 483,863 + Sama_0389 0.88 +0.7 483,863 + Sama_0389 0.88 +0.6 483,863 + Sama_0389 0.88 -0.9 483,863 + Sama_0389 0.88 -1.6 483,863 + Sama_0389 0.88 +0.4 483,863 + Sama_0389 0.88 -0.2 483,863 + Sama_0389 0.88 +1.3 483,863 + Sama_0389 0.88 -0.5 483,864 - Sama_0389 0.88 +3.1 483,864 - Sama_0389 0.88 -2.1 483,864 - Sama_0389 0.88 +1.4 483,864 - Sama_0389 0.88 -0.2 483,864 - Sama_0389 0.88 +0.1 483,864 - Sama_0389 0.88 -2.6 483,864 - Sama_0389 0.88 +0.8 483,864 - Sama_0389 0.88 -2.4 483,864 - Sama_0389 0.88 +0.2 483,864 - Sama_0389 0.88 -0.8 483,864 - Sama_0389 0.88 +0.1 483,864 - Sama_0389 0.88 +1.8 483,864 - Sama_0389 0.88 -1.6 483,864 - Sama_0389 0.88 +0.4 483,864 - Sama_0389 0.88 -1.3 483,864 - Sama_0389 0.88 -1.8 483,866 + Sama_0389 0.88 -0.3 483,866 + Sama_0389 0.88 -0.5 483,866 + Sama_0389 0.88 +0.0 483,866 + Sama_0389 0.88 -1.3 483,867 - Sama_0389 0.88 +0.5 483,867 - Sama_0389 0.88 +0.7 483,867 - Sama_0389 0.88 +0.2 483,867 - Sama_0389 0.88 +0.0 483,867 - Sama_0389 0.88 -1.4 483,867 - Sama_0389 0.88 -0.9 483,867 - Sama_0389 0.88 -1.3 483,867 - Sama_0389 0.88 -1.2 483,867 - Sama_0389 0.88 -1.0 483,922 + +0.4 483,922 + +1.1 483,922 + +0.0 483,923 - -2.2 483,926 + -3.4 483,926 + +0.0 483,926 + +1.4 483,926 + -1.4 483,926 + -0.8 483,926 + +2.3 483,927 - +1.8 483,927 - +0.0 483,927 - +0.8 483,927 - +0.0 483,927 - -1.3 483,927 - +1.2 483,927 - +0.2 483,927 - +2.6 483,927 - +1.3 483,927 - -0.6 483,927 - +0.3 483,979 - -1.3 483,979 - +2.3 484,221 + Sama_0390 0.79 +0.2 484,235 + Sama_0390 0.85 +1.5 484,236 - Sama_0390 0.85 +1.7 484,237 + Sama_0390 0.86 -2.0 484,238 - Sama_0390 0.86 +1.6 484,238 - Sama_0390 0.86 -1.4 484,277 + +0.2 484,278 - +2.2 484,278 - +1.6 484,278 - -1.4 484,278 - -0.3 484,281 + +1.2 484,281 + -0.2 484,281 + -0.2 484,282 - +1.8 484,282 - -0.1 484,302 - +0.5 484,302 - +1.7 484,302 - -0.8 484,313 + -1.5 484,313 + +1.0 484,313 + +0.6 484,313 + -1.7 484,314 - -1.4 484,314 - +0.6 484,314 - -0.1 484,322 + -0.4 484,322 + -0.9 484,323 - -1.8 484,323 - +1.7 484,395 - -1.2 484,406 + +0.5 484,416 + -2.6 484,417 - +1.1 484,438 - -1.6 484,438 - -2.9 484,476 - -0.6 484,544 - +0.0 484,625 - -0.2 484,631 + -1.8 484,632 - +0.4 484,642 - -1.4 484,669 - -1.7 484,669 - -2.6 484,719 + +0.4 484,725 + -0.9 484,734 + +0.8 484,735 - -2.2 484,778 - +0.0 484,779 + -1.8 484,780 - +0.3 484,785 + +1.7 484,790 + +1.5 484,790 + -0.3 484,790 + +0.0 484,792 + +0.4 484,792 + +1.8 484,792 + -2.1 484,793 - +0.3 484,793 - -1.1 484,802 + +2.5 484,808 + -2.4 484,959 + -1.3 484,960 - -2.1 484,962 + -0.7 485,006 + +1.0 485,007 - -0.7 485,007 - +3.2 485,011 + +1.5 485,012 - +0.2 485,019 + -0.6 485,059 - Sama_0391 0.13 -1.1 485,089 - Sama_0391 0.16 -2.6 485,132 + Sama_0391 0.21 -2.2 485,132 + Sama_0391 0.21 -1.1 485,152 + Sama_0391 0.23 +1.7 485,152 + Sama_0391 0.23 -1.8 485,152 + Sama_0391 0.23 +1.0 485,152 + Sama_0391 0.23 -1.1 485,152 + Sama_0391 0.23 -0.1 485,152 + Sama_0391 0.23 +1.3 485,152 + Sama_0391 0.23 -0.3 485,153 - Sama_0391 0.23 -1.1 485,153 - Sama_0391 0.23 -1.5 485,153 - Sama_0391 0.23 +0.7 485,153 - Sama_0391 0.23 -1.4 485,153 - Sama_0391 0.23 -0.1 485,153 - Sama_0391 0.23 +1.8 485,157 + Sama_0391 0.23 -0.1 485,157 + Sama_0391 0.23 +0.1 485,157 + Sama_0391 0.23 +0.2 485,158 - Sama_0391 0.23 +1.1 485,158 - Sama_0391 0.23 +1.7 485,158 - Sama_0391 0.23 -0.7 485,192 + Sama_0391 0.27 -1.3 485,192 + Sama_0391 0.27 -1.4 485,192 + Sama_0391 0.27 +0.6 485,192 + Sama_0391 0.27 -0.0 485,192 + Sama_0391 0.27 +0.4 485,192 + Sama_0391 0.27 -2.1 485,192 + Sama_0391 0.27 -0.8 485,192 + Sama_0391 0.27 -1.8 485,193 - Sama_0391 0.27 -2.2 485,193 - Sama_0391 0.27 -1.6 485,193 - Sama_0391 0.27 +1.0 485,193 - Sama_0391 0.27 +0.3 485,193 - Sama_0391 0.27 +0.4 485,193 - Sama_0391 0.27 +2.0 485,193 - Sama_0391 0.27 -0.3 485,193 - Sama_0391 0.27 -0.7 485,207 + Sama_0391 0.28 +2.9 485,207 + Sama_0391 0.28 +1.8 485,208 - Sama_0391 0.28 -2.6 485,266 + Sama_0391 0.34 +1.0 485,266 + Sama_0391 0.34 -2.1 485,267 - Sama_0391 0.34 +1.4 485,267 - Sama_0391 0.34 -2.0 485,267 - Sama_0391 0.34 +1.6 485,267 - Sama_0391 0.34 -0.6 485,267 - Sama_0391 0.34 -0.3
Or see this region's nucleotide sequence