Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0386 and hemE are separated by 456 nucleotides hemE and Sama_0388 are separated by 503 nucleotides
Sama_0386: Sama_0386 - anti-RNA polymerase sigma 70 factor (RefSeq), at 478,075 to 478,539
_0386
Sama_0387: hemE - uroporphyrinogen decarboxylase (RefSeq), at 478,996 to 480,060
hemE
Sama_0388: Sama_0388 - putative diguanylate phosphodiesterase (RefSeq), at 480,564 to 483,077
_0388
Position (kb) 478
479
480
481 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.072 kb on + strand at 478.072 kb on + strand at 478.072 kb on + strand at 478.072 kb on + strand at 478.072 kb on + strand at 478.072 kb on + strand at 478.073 kb on - strand at 478.073 kb on - strand at 478.203 kb on + strand, within Sama_0386 at 478.204 kb on - strand, within Sama_0386 at 478.204 kb on - strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.230 kb on + strand, within Sama_0386 at 478.230 kb on + strand, within Sama_0386 at 478.230 kb on + strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.320 kb on + strand, within Sama_0386 at 478.320 kb on + strand, within Sama_0386 at 478.320 kb on + strand, within Sama_0386 at 478.321 kb on - strand, within Sama_0386 at 478.321 kb on - strand, within Sama_0386 at 478.321 kb on - strand, within Sama_0386 at 478.321 kb on - strand, within Sama_0386 at 478.322 kb on + strand, within Sama_0386 at 478.322 kb on + strand, within Sama_0386 at 478.322 kb on + strand, within Sama_0386 at 478.322 kb on + strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.349 kb on + strand, within Sama_0386 at 478.349 kb on + strand, within Sama_0386 at 478.350 kb on - strand, within Sama_0386 at 478.350 kb on - strand, within Sama_0386 at 478.415 kb on + strand, within Sama_0386 at 478.415 kb on + strand, within Sama_0386 at 478.415 kb on + strand, within Sama_0386 at 478.415 kb on + strand, within Sama_0386 at 478.415 kb on + strand, within Sama_0386 at 478.416 kb on - strand, within Sama_0386 at 478.423 kb on + strand, within Sama_0386 at 478.423 kb on + strand, within Sama_0386 at 478.423 kb on + strand, within Sama_0386 at 478.423 kb on + strand, within Sama_0386 at 478.424 kb on - strand, within Sama_0386 at 478.424 kb on - strand, within Sama_0386 at 478.442 kb on + strand, within Sama_0386 at 478.491 kb on + strand, within Sama_0386 at 478.491 kb on + strand, within Sama_0386 at 478.491 kb on + strand, within Sama_0386 at 478.492 kb on - strand, within Sama_0386 at 478.492 kb on - strand, within Sama_0386 at 478.557 kb on + strand at 478.557 kb on + strand at 478.557 kb on + strand at 478.557 kb on + strand at 478.557 kb on + strand at 478.558 kb on - strand at 478.558 kb on - strand at 478.558 kb on - strand at 478.558 kb on - strand at 478.572 kb on + strand at 478.577 kb on + strand at 478.577 kb on + strand at 478.578 kb on - strand at 478.578 kb on - strand at 478.578 kb on - strand at 478.658 kb on - strand at 478.718 kb on + strand at 478.718 kb on + strand at 478.718 kb on + strand at 478.719 kb on - strand at 478.719 kb on - strand at 478.719 kb on - strand at 478.719 kb on - strand at 478.719 kb on - strand at 478.719 kb on - strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.775 kb on - strand at 478.775 kb on - strand at 478.825 kb on + strand at 478.825 kb on + strand at 478.825 kb on + strand at 478.825 kb on + strand at 478.826 kb on - strand at 478.826 kb on - strand at 478.826 kb on - strand at 478.826 kb on - strand at 478.826 kb on - strand at 478.826 kb on - strand at 478.868 kb on + strand at 478.869 kb on - strand at 478.869 kb on - strand at 478.869 kb on - strand at 478.869 kb on - strand at 478.877 kb on - strand at 478.934 kb on + strand at 478.935 kb on - strand at 478.947 kb on + strand at 480.049 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.059 kb on - strand at 480.059 kb on - strand at 480.059 kb on - strand at 480.059 kb on - strand at 480.059 kb on - strand at 480.059 kb on - strand at 480.119 kb on + strand at 480.119 kb on + strand at 480.120 kb on - strand at 480.134 kb on + strand at 480.134 kb on + strand at 480.135 kb on - strand at 480.147 kb on + strand at 480.147 kb on + strand at 480.148 kb on - strand at 480.172 kb on + strand at 480.172 kb on + strand at 480.173 kb on - strand at 480.173 kb on - strand at 480.173 kb on - strand at 480.241 kb on + strand at 480.241 kb on + strand at 480.242 kb on - strand at 480.325 kb on + strand at 480.325 kb on + strand at 480.325 kb on + strand at 480.325 kb on + strand at 480.325 kb on + strand at 480.325 kb on + strand at 480.326 kb on - strand at 480.326 kb on - strand at 480.326 kb on - strand at 480.326 kb on - strand at 480.328 kb on - strand at 480.328 kb on - strand at 480.328 kb on - strand at 480.337 kb on + strand at 480.337 kb on + strand at 480.365 kb on + strand at 480.365 kb on + strand at 480.366 kb on - strand at 480.438 kb on - strand at 480.487 kb on + strand at 480.487 kb on + strand at 480.488 kb on - strand at 480.488 kb on - strand at 480.488 kb on - strand at 480.492 kb on + strand at 480.492 kb on + strand at 480.492 kb on + strand at 480.492 kb on + strand at 480.492 kb on + strand at 480.535 kb on - strand at 480.560 kb on + strand at 480.608 kb on + strand at 480.608 kb on + strand at 480.609 kb on - strand at 480.609 kb on - strand at 480.630 kb on + strand at 480.630 kb on + strand at 480.630 kb on + strand at 480.708 kb on - strand at 480.710 kb on + strand at 480.710 kb on + strand at 480.720 kb on + strand at 480.721 kb on - strand at 480.729 kb on - strand at 480.745 kb on + strand at 480.745 kb on + strand at 480.745 kb on + strand at 480.746 kb on - strand at 480.746 kb on - strand at 480.746 kb on - strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.763 kb on - strand at 480.763 kb on - strand at 480.763 kb on - strand at 480.763 kb on - strand at 480.763 kb on - strand at 480.763 kb on - strand at 480.807 kb on - strand at 480.807 kb on - strand at 480.807 kb on - strand at 480.807 kb on - strand at 480.822 kb on + strand, within Sama_0388 at 480.822 kb on + strand, within Sama_0388 at 480.903 kb on + strand, within Sama_0388 at 480.903 kb on + strand, within Sama_0388 at 480.904 kb on - strand, within Sama_0388 at 480.910 kb on + strand, within Sama_0388 at 480.910 kb on + strand, within Sama_0388 at 480.989 kb on - strand, within Sama_0388 at 480.989 kb on - strand, within Sama_0388 at 481.004 kb on + strand, within Sama_0388 at 481.005 kb on - strand, within Sama_0388
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 477,999 + +0.1 477,999 + -2.4 477,999 + +2.4 477,999 + -0.7 477,999 + +0.4 477,999 + +0.4 477,999 + -0.3 477,999 + -1.6 477,999 + -1.1 477,999 + -0.2 477,999 + +2.2 477,999 + -0.3 477,999 + +0.5 477,999 + -3.1 477,999 + -1.8 478,000 - -0.7 478,000 - -2.9 478,000 - +1.3 478,000 - -0.4 478,000 - -1.1 478,000 - +0.0 478,000 - +0.4 478,000 - -0.8 478,000 - -0.5 478,000 - +0.0 478,000 - +0.4 478,001 + -0.3 478,001 + -2.1 478,001 + -2.5 478,001 + +2.7 478,001 + -2.7 478,001 + +1.7 478,001 + -0.4 478,001 + -1.0 478,001 + -1.3 478,001 + +1.5 478,002 - +0.3 478,002 - +1.4 478,002 - +2.0 478,002 - +0.6 478,002 - -1.9 478,002 - -2.1 478,002 - +1.8 478,002 - +0.2 478,002 - +0.2 478,002 - -4.1 478,002 - -0.8 478,002 - +3.8 478,072 + +0.3 478,072 + +1.4 478,072 + +0.7 478,072 + -1.5 478,072 + -1.8 478,072 + -0.0 478,073 - +0.7 478,073 - +0.9 478,203 + Sama_0386 0.28 -0.9 478,204 - Sama_0386 0.28 -0.3 478,204 - Sama_0386 0.28 -1.7 478,205 + Sama_0386 0.28 +1.6 478,205 + Sama_0386 0.28 -3.1 478,205 + Sama_0386 0.28 +0.7 478,205 + Sama_0386 0.28 +0.5 478,205 + Sama_0386 0.28 -0.8 478,205 + Sama_0386 0.28 -1.7 478,205 + Sama_0386 0.28 -1.0 478,205 + Sama_0386 0.28 +0.4 478,205 + Sama_0386 0.28 +0.0 478,205 + Sama_0386 0.28 -0.6 478,206 - Sama_0386 0.28 +0.0 478,206 - Sama_0386 0.28 +0.8 478,206 - Sama_0386 0.28 -2.1 478,206 - Sama_0386 0.28 -0.6 478,206 - Sama_0386 0.28 -1.9 478,206 - Sama_0386 0.28 +1.4 478,206 - Sama_0386 0.28 +0.4 478,206 - Sama_0386 0.28 +3.1 478,206 - Sama_0386 0.28 -1.3 478,206 - Sama_0386 0.28 -1.3 478,206 - Sama_0386 0.28 -1.9 478,206 - Sama_0386 0.28 -0.9 478,230 + Sama_0386 0.33 +0.1 478,230 + Sama_0386 0.33 +1.0 478,230 + Sama_0386 0.33 -1.4 478,231 - Sama_0386 0.34 -0.5 478,231 - Sama_0386 0.34 -2.0 478,231 - Sama_0386 0.34 +0.0 478,231 - Sama_0386 0.34 +2.3 478,231 - Sama_0386 0.34 +3.0 478,231 - Sama_0386 0.34 -0.8 478,231 - Sama_0386 0.34 -2.0 478,231 - Sama_0386 0.34 -1.9 478,320 + Sama_0386 0.53 +1.3 478,320 + Sama_0386 0.53 -2.3 478,320 + Sama_0386 0.53 -1.7 478,321 - Sama_0386 0.53 +1.0 478,321 - Sama_0386 0.53 +1.0 478,321 - Sama_0386 0.53 -0.4 478,321 - Sama_0386 0.53 -0.0 478,322 + Sama_0386 0.53 -0.9 478,322 + Sama_0386 0.53 -1.1 478,322 + Sama_0386 0.53 +1.2 478,322 + Sama_0386 0.53 -0.6 478,323 - Sama_0386 0.53 -2.1 478,323 - Sama_0386 0.53 +2.3 478,323 - Sama_0386 0.53 +2.0 478,323 - Sama_0386 0.53 +0.9 478,323 - Sama_0386 0.53 +0.4 478,323 - Sama_0386 0.53 -0.5 478,323 - Sama_0386 0.53 -0.7 478,323 - Sama_0386 0.53 -1.3 478,323 - Sama_0386 0.53 +0.4 478,349 + Sama_0386 0.59 -0.6 478,349 + Sama_0386 0.59 -1.7 478,350 - Sama_0386 0.59 +1.1 478,350 - Sama_0386 0.59 -0.6 478,415 + Sama_0386 0.73 -2.4 478,415 + Sama_0386 0.73 -0.3 478,415 + Sama_0386 0.73 +1.2 478,415 + Sama_0386 0.73 +0.0 478,415 + Sama_0386 0.73 -0.8 478,416 - Sama_0386 0.73 +0.7 478,423 + Sama_0386 0.75 +1.1 478,423 + Sama_0386 0.75 +0.2 478,423 + Sama_0386 0.75 -0.3 478,423 + Sama_0386 0.75 -2.1 478,424 - Sama_0386 0.75 -1.3 478,424 - Sama_0386 0.75 +1.1 478,442 + Sama_0386 0.79 +1.2 478,491 + Sama_0386 0.89 -0.1 478,491 + Sama_0386 0.89 -1.1 478,491 + Sama_0386 0.89 +2.8 478,492 - Sama_0386 0.90 +2.5 478,492 - Sama_0386 0.90 -1.3 478,557 + -0.7 478,557 + -1.8 478,557 + -2.1 478,557 + +0.9 478,557 + +0.4 478,558 - -2.0 478,558 - -1.3 478,558 - -0.3 478,558 - -1.7 478,572 + -0.4 478,577 + +0.4 478,577 + -0.2 478,578 - +3.5 478,578 - -0.8 478,578 - -1.3 478,658 - +0.3 478,718 + +0.2 478,718 + -0.9 478,718 + -0.7 478,719 - -0.2 478,719 - +0.5 478,719 - -0.1 478,719 - -1.3 478,719 - +1.1 478,719 - -2.1 478,720 + -1.3 478,720 + -2.4 478,720 + -0.6 478,721 - -1.0 478,721 - +0.1 478,721 - -0.4 478,721 - +0.0 478,721 - -1.0 478,775 - +1.1 478,775 - -0.2 478,825 + +2.3 478,825 + -1.7 478,825 + +2.3 478,825 + -0.3 478,826 - -0.1 478,826 - -0.9 478,826 - +1.6 478,826 - +0.0 478,826 - -2.6 478,826 - -1.9 478,868 + -0.5 478,869 - +2.0 478,869 - -1.4 478,869 - +1.0 478,869 - +1.4 478,877 - +0.8 478,934 + -1.9 478,935 - -0.9 478,947 + -0.3 480,049 + +1.1 480,058 + +0.0 480,058 + -2.1 480,058 + -0.7 480,058 + -1.7 480,058 + +0.0 480,058 + +0.0 480,058 + -0.5 480,058 + +2.0 480,059 - -1.9 480,059 - +2.6 480,059 - +1.9 480,059 - +1.9 480,059 - -0.2 480,059 - -0.1 480,119 + +1.5 480,119 + +0.5 480,120 - +0.1 480,134 + -0.3 480,134 + +1.0 480,135 - -1.0 480,147 + +1.1 480,147 + -0.4 480,148 - +2.0 480,172 + +0.0 480,172 + -0.3 480,173 - +0.0 480,173 - +1.8 480,173 - -2.1 480,241 + +2.8 480,241 + +3.5 480,242 - +2.0 480,325 + -1.8 480,325 + +3.3 480,325 + +2.5 480,325 + -2.5 480,325 + +2.4 480,325 + +0.5 480,326 - +1.1 480,326 - +0.4 480,326 - -1.1 480,326 - -2.0 480,328 - -0.3 480,328 - -3.0 480,328 - +0.4 480,337 + +1.3 480,337 + +1.7 480,365 + +2.4 480,365 + -0.3 480,366 - -0.1 480,438 - +1.0 480,487 + -0.8 480,487 + -0.8 480,488 - -0.8 480,488 - -2.4 480,488 - -0.3 480,492 + -0.2 480,492 + -2.0 480,492 + -2.4 480,492 + -2.0 480,492 + -1.6 480,535 - +0.0 480,560 + -2.1 480,608 + -2.3 480,608 + -2.2 480,609 - -2.8 480,609 - -0.6 480,630 + -3.8 480,630 + -1.1 480,630 + -0.5 480,708 - -0.6 480,710 + +1.0 480,710 + -1.7 480,720 + -2.7 480,721 - -3.4 480,729 - -1.4 480,745 + +0.5 480,745 + -1.4 480,745 + -2.4 480,746 - -2.5 480,746 - -2.0 480,746 - -2.4 480,762 + -2.0 480,762 + -2.2 480,762 + +1.0 480,762 + -0.8 480,762 + -1.7 480,762 + -0.9 480,762 + -0.6 480,762 + -1.4 480,762 + -1.3 480,763 - -2.6 480,763 - -1.4 480,763 - +0.4 480,763 - -0.4 480,763 - -1.9 480,763 - -2.7 480,807 - -2.6 480,807 - +3.3 480,807 - -0.6 480,807 - +0.4 480,822 + Sama_0388 0.10 -2.5 480,822 + Sama_0388 0.10 -1.4 480,903 + Sama_0388 0.13 -2.9 480,903 + Sama_0388 0.13 -2.2 480,904 - Sama_0388 0.14 +0.0 480,910 + Sama_0388 0.14 -1.6 480,910 + Sama_0388 0.14 -3.1 480,989 - Sama_0388 0.17 +0.0 480,989 - Sama_0388 0.17 -2.6 481,004 + Sama_0388 0.18 -1.5 481,005 - Sama_0388 0.18 -2.2
Or see this region's nucleotide sequence