Strain Fitness in Shewanella amazonensis SB2B around Sama_0281

Experiment: Motility assay, center cut sample 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0280 and Sama_0281 are separated by 129 nucleotidesSama_0281 and Sama_0282 overlap by 11 nucleotidesSama_0282 and Sama_0283 are separated by 25 nucleotides Sama_0280: Sama_0280 - hypothetical protein (RefSeq), at 327,046 to 328,854 _0280 Sama_0281: Sama_0281 - modification methylase (cytosine-specific methyltransferase (RefSeq), at 328,984 to 330,546 _0281 Sama_0282: Sama_0282 - putative DNA mismatch endonuclease protein (RefSeq), at 330,536 to 331,021 _0282 Sama_0283: Sama_0283 - hypothetical protein (RefSeq), at 331,047 to 331,655 _0283 Position (kb) 328 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 328.030 kb on + strand, within Sama_0280at 328.046 kb on + strand, within Sama_0280at 328.116 kb on + strand, within Sama_0280at 328.116 kb on + strand, within Sama_0280at 328.116 kb on + strand, within Sama_0280at 328.116 kb on + strand, within Sama_0280at 328.118 kb on + strand, within Sama_0280at 328.119 kb on - strand, within Sama_0280at 328.125 kb on + strand, within Sama_0280at 328.125 kb on + strand, within Sama_0280at 328.125 kb on + strand, within Sama_0280at 328.126 kb on - strand, within Sama_0280at 328.126 kb on - strand, within Sama_0280at 328.126 kb on - strand, within Sama_0280at 328.126 kb on - strand, within Sama_0280at 328.127 kb on + strand, within Sama_0280at 328.128 kb on - strand, within Sama_0280at 328.128 kb on - strand, within Sama_0280at 328.128 kb on - strand, within Sama_0280at 328.128 kb on - strand, within Sama_0280at 328.159 kb on - strand, within Sama_0280at 328.159 kb on - strand, within Sama_0280at 328.172 kb on + strand, within Sama_0280at 328.180 kb on - strand, within Sama_0280at 328.180 kb on - strand, within Sama_0280at 328.199 kb on + strand, within Sama_0280at 328.200 kb on - strand, within Sama_0280at 328.200 kb on - strand, within Sama_0280at 328.225 kb on + strand, within Sama_0280at 328.225 kb on + strand, within Sama_0280at 328.225 kb on + strand, within Sama_0280at 328.226 kb on - strand, within Sama_0280at 328.255 kb on + strand, within Sama_0280at 328.255 kb on + strand, within Sama_0280at 328.256 kb on - strand, within Sama_0280at 328.256 kb on - strand, within Sama_0280at 328.276 kb on + strand, within Sama_0280at 328.277 kb on - strand, within Sama_0280at 328.278 kb on + strand, within Sama_0280at 328.278 kb on + strand, within Sama_0280at 328.279 kb on - strand, within Sama_0280at 328.305 kb on + strand, within Sama_0280at 328.306 kb on - strand, within Sama_0280at 328.339 kb on - strand, within Sama_0280at 328.362 kb on + strand, within Sama_0280at 328.362 kb on + strand, within Sama_0280at 328.371 kb on + strand, within Sama_0280at 328.378 kb on - strand, within Sama_0280at 328.381 kb on + strand, within Sama_0280at 328.381 kb on + strand, within Sama_0280at 328.381 kb on + strand, within Sama_0280at 328.387 kb on + strand, within Sama_0280at 328.388 kb on - strand, within Sama_0280at 328.388 kb on - strand, within Sama_0280at 328.388 kb on - strand, within Sama_0280at 328.389 kb on + strand, within Sama_0280at 328.389 kb on + strand, within Sama_0280at 328.389 kb on + strand, within Sama_0280at 328.389 kb on + strand, within Sama_0280at 328.389 kb on + strand, within Sama_0280at 328.389 kb on + strand, within Sama_0280at 328.389 kb on + strand, within Sama_0280at 328.389 kb on + strand, within Sama_0280at 328.390 kb on - strand, within Sama_0280at 328.390 kb on - strand, within Sama_0280at 328.390 kb on - strand, within Sama_0280at 328.390 kb on - strand, within Sama_0280at 328.390 kb on - strand, within Sama_0280at 328.390 kb on - strand, within Sama_0280at 328.391 kb on + strand, within Sama_0280at 328.392 kb on - strand, within Sama_0280at 328.392 kb on - strand, within Sama_0280at 328.470 kb on + strand, within Sama_0280at 328.552 kb on - strand, within Sama_0280at 328.591 kb on - strand, within Sama_0280at 328.593 kb on + strand, within Sama_0280at 328.593 kb on + strand, within Sama_0280at 328.593 kb on + strand, within Sama_0280at 328.593 kb on + strand, within Sama_0280at 328.593 kb on + strand, within Sama_0280at 328.593 kb on + strand, within Sama_0280at 328.593 kb on + strand, within Sama_0280at 328.594 kb on - strand, within Sama_0280at 328.594 kb on - strand, within Sama_0280at 328.595 kb on + strand, within Sama_0280at 328.596 kb on - strand, within Sama_0280at 328.596 kb on - strand, within Sama_0280at 328.604 kb on - strand, within Sama_0280at 328.625 kb on + strand, within Sama_0280at 328.626 kb on - strand, within Sama_0280at 328.649 kb on + strand, within Sama_0280at 328.677 kb on - strandat 328.680 kb on + strandat 328.681 kb on - strandat 328.737 kb on + strandat 328.738 kb on - strandat 328.738 kb on - strandat 328.828 kb on - strandat 328.828 kb on - strandat 328.845 kb on + strandat 328.845 kb on + strandat 328.845 kb on + strandat 328.845 kb on + strandat 328.845 kb on + strandat 328.846 kb on - strandat 328.846 kb on - strandat 328.846 kb on - strandat 328.846 kb on - strandat 328.852 kb on + strandat 328.853 kb on - strandat 328.868 kb on + strandat 328.868 kb on + strandat 328.869 kb on - strandat 328.874 kb on + strandat 328.874 kb on + strandat 328.874 kb on + strandat 328.924 kb on - strandat 328.947 kb on + strandat 328.967 kb on + strandat 328.970 kb on + strandat 328.970 kb on + strandat 328.970 kb on + strandat 328.972 kb on + strandat 328.972 kb on + strandat 328.972 kb on + strandat 330.554 kb on + strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.686 kb on - strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.690 kb on - strand, within Sama_0282at 330.690 kb on - strand, within Sama_0282at 330.700 kb on - strand, within Sama_0282at 330.708 kb on + strand, within Sama_0282at 330.708 kb on + strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.968 kb on + strand, within Sama_0282at 330.968 kb on + strand, within Sama_0282at 330.969 kb on - strand, within Sama_0282at 331.030 kb on - strandat 331.042 kb on + strandat 331.042 kb on + strandat 331.042 kb on + strandat 331.049 kb on - strandat 331.059 kb on + strandat 331.059 kb on + strandat 331.060 kb on - strandat 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.192 kb on + strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.202 kb on + strand, within Sama_0283at 331.253 kb on + strand, within Sama_0283at 331.263 kb on - strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.356 kb on + strand, within Sama_0283at 331.356 kb on + strand, within Sama_0283at 331.426 kb on + strand, within Sama_0283at 331.434 kb on + strand, within Sama_0283at 331.435 kb on - strand, within Sama_0283at 331.454 kb on + strand, within Sama_0283at 331.474 kb on - strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1
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328,030 + Sama_0280 0.54 +1.0
328,046 + Sama_0280 0.55 +0.5
328,116 + Sama_0280 0.59 +0.1
328,116 + Sama_0280 0.59 +0.0
328,116 + Sama_0280 0.59 -2.0
328,116 + Sama_0280 0.59 -1.4
328,118 + Sama_0280 0.59 -0.1
328,119 - Sama_0280 0.59 +0.2
328,125 + Sama_0280 0.60 +1.1
328,125 + Sama_0280 0.60 +0.1
328,125 + Sama_0280 0.60 -0.1
328,126 - Sama_0280 0.60 +0.4
328,126 - Sama_0280 0.60 +2.3
328,126 - Sama_0280 0.60 -0.3
328,126 - Sama_0280 0.60 +1.0
328,127 + Sama_0280 0.60 -0.6
328,128 - Sama_0280 0.60 -0.8
328,128 - Sama_0280 0.60 +0.4
328,128 - Sama_0280 0.60 -2.0
328,128 - Sama_0280 0.60 -0.7
328,159 - Sama_0280 0.62 +0.4
328,159 - Sama_0280 0.62 +0.6
328,172 + Sama_0280 0.62 -0.6
328,180 - Sama_0280 0.63 -0.2
328,180 - Sama_0280 0.63 -1.4
328,199 + Sama_0280 0.64 -0.9
328,200 - Sama_0280 0.64 +0.0
328,200 - Sama_0280 0.64 +1.0
328,225 + Sama_0280 0.65 -0.7
328,225 + Sama_0280 0.65 -0.7
328,225 + Sama_0280 0.65 +1.4
328,226 - Sama_0280 0.65 -1.3
328,255 + Sama_0280 0.67 +2.9
328,255 + Sama_0280 0.67 -2.1
328,256 - Sama_0280 0.67 +1.7
328,256 - Sama_0280 0.67 +1.2
328,276 + Sama_0280 0.68 -1.8
328,277 - Sama_0280 0.68 -1.1
328,278 + Sama_0280 0.68 -1.1
328,278 + Sama_0280 0.68 -1.0
328,279 - Sama_0280 0.68 -1.1
328,305 + Sama_0280 0.70 -0.6
328,306 - Sama_0280 0.70 -0.3
328,339 - Sama_0280 0.71 -1.2
328,362 + Sama_0280 0.73 -2.9
328,362 + Sama_0280 0.73 +2.0
328,371 + Sama_0280 0.73 -1.3
328,378 - Sama_0280 0.74 -0.6
328,381 + Sama_0280 0.74 +0.4
328,381 + Sama_0280 0.74 -0.4
328,381 + Sama_0280 0.74 -0.4
328,387 + Sama_0280 0.74 +0.8
328,388 - Sama_0280 0.74 +0.7
328,388 - Sama_0280 0.74 -1.6
328,388 - Sama_0280 0.74 +1.0
328,389 + Sama_0280 0.74 -2.1
328,389 + Sama_0280 0.74 +0.9
328,389 + Sama_0280 0.74 -1.3
328,389 + Sama_0280 0.74 -0.6
328,389 + Sama_0280 0.74 -0.1
328,389 + Sama_0280 0.74 -2.0
328,389 + Sama_0280 0.74 +0.2
328,389 + Sama_0280 0.74 -1.2
328,390 - Sama_0280 0.74 -1.9
328,390 - Sama_0280 0.74 +0.9
328,390 - Sama_0280 0.74 -0.8
328,390 - Sama_0280 0.74 +0.2
328,390 - Sama_0280 0.74 -1.7
328,390 - Sama_0280 0.74 -0.6
328,391 + Sama_0280 0.74 +0.4
328,392 - Sama_0280 0.74 -2.6
328,392 - Sama_0280 0.74 -0.1
328,470 + Sama_0280 0.79 +1.1
328,552 - Sama_0280 0.83 +2.0
328,591 - Sama_0280 0.85 -2.8
328,593 + Sama_0280 0.86 -0.6
328,593 + Sama_0280 0.86 -2.1
328,593 + Sama_0280 0.86 -1.4
328,593 + Sama_0280 0.86 +0.0
328,593 + Sama_0280 0.86 -1.1
328,593 + Sama_0280 0.86 -0.2
328,593 + Sama_0280 0.86 -2.4
328,594 - Sama_0280 0.86 -1.6
328,594 - Sama_0280 0.86 -0.8
328,595 + Sama_0280 0.86 +1.2
328,596 - Sama_0280 0.86 +1.0
328,596 - Sama_0280 0.86 -0.9
328,604 - Sama_0280 0.86 -0.4
328,625 + Sama_0280 0.87 +1.8
328,626 - Sama_0280 0.87 +1.8
328,649 + Sama_0280 0.89 +0.4
328,677 - -2.4
328,680 + -0.6
328,681 - +0.7
328,737 + -0.0
328,738 - -0.4
328,738 - +1.6
328,828 - -1.4
328,828 - -2.6
328,845 + +2.8
328,845 + -1.1
328,845 + -2.0
328,845 + +0.8
328,845 + +1.8
328,846 - -0.7
328,846 - -3.2
328,846 - -2.8
328,846 - +4.0
328,852 + -1.4
328,853 - -0.1
328,868 + -1.9
328,868 + +0.4
328,869 - +1.8
328,874 + +0.7
328,874 + +0.5
328,874 + -0.8
328,924 - +0.7
328,947 + -1.3
328,967 + -0.3
328,970 + +2.4
328,970 + +2.0
328,970 + -0.9
328,972 + -1.2
328,972 + -0.8
328,972 + +0.4
330,554 + -0.8
330,555 - +0.3
330,555 - +1.2
330,555 - -0.0
330,555 - -0.8
330,555 - +2.3
330,686 - Sama_0282 0.31 +0.4
330,689 + Sama_0282 0.31 +0.4
330,689 + Sama_0282 0.31 -2.0
330,689 + Sama_0282 0.31 +1.4
330,690 - Sama_0282 0.32 +0.0
330,690 - Sama_0282 0.32 -1.3
330,700 - Sama_0282 0.34 +1.0
330,708 + Sama_0282 0.35 +0.7
330,708 + Sama_0282 0.35 +0.0
330,709 - Sama_0282 0.36 +1.2
330,709 - Sama_0282 0.36 +1.0
330,709 - Sama_0282 0.36 -0.1
330,859 + Sama_0282 0.66 +0.6
330,859 + Sama_0282 0.66 +1.5
330,859 + Sama_0282 0.66 +0.2
330,859 + Sama_0282 0.66 -1.9
330,860 - Sama_0282 0.67 -0.7
330,860 - Sama_0282 0.67 -2.6
330,860 - Sama_0282 0.67 -0.3
330,860 - Sama_0282 0.67 -1.8
330,860 - Sama_0282 0.67 -2.4
330,968 + Sama_0282 0.89 -0.6
330,968 + Sama_0282 0.89 -0.1
330,969 - Sama_0282 0.89 +0.1
331,030 - -1.3
331,042 + -0.0
331,042 + -0.7
331,042 + -1.6
331,049 - +0.4
331,059 + -0.1
331,059 + +0.1
331,060 - -0.1
331,154 + Sama_0283 0.18 +2.1
331,154 + Sama_0283 0.18 -1.7
331,154 + Sama_0283 0.18 +1.2
331,154 + Sama_0283 0.18 -1.4
331,154 + Sama_0283 0.18 +1.8
331,154 + Sama_0283 0.18 +1.6
331,154 + Sama_0283 0.18 -0.8
331,155 - Sama_0283 0.18 -3.0
331,155 - Sama_0283 0.18 +0.8
331,155 - Sama_0283 0.18 -1.6
331,155 - Sama_0283 0.18 +0.4
331,155 - Sama_0283 0.18 -1.0
331,155 - Sama_0283 0.18 +0.7
331,155 - Sama_0283 0.18 -1.1
331,192 + Sama_0283 0.24 +2.7
331,193 - Sama_0283 0.24 -2.1
331,193 - Sama_0283 0.24 -1.0
331,193 - Sama_0283 0.24 +0.1
331,193 - Sama_0283 0.24 -1.4
331,193 - Sama_0283 0.24 +1.2
331,202 + Sama_0283 0.25 -1.1
331,253 + Sama_0283 0.34 +0.2
331,263 - Sama_0283 0.35 -1.2
331,350 + Sama_0283 0.50 +1.3
331,350 + Sama_0283 0.50 -0.6
331,350 + Sama_0283 0.50 -0.8
331,350 + Sama_0283 0.50 +0.9
331,350 + Sama_0283 0.50 -0.1
331,350 + Sama_0283 0.50 -0.9
331,350 + Sama_0283 0.50 -0.3
331,350 + Sama_0283 0.50 -0.1
331,350 + Sama_0283 0.50 +0.8
331,350 + Sama_0283 0.50 +2.2
331,351 - Sama_0283 0.50 -0.2
331,351 - Sama_0283 0.50 +1.0
331,351 - Sama_0283 0.50 +0.6
331,351 - Sama_0283 0.50 -0.8
331,356 + Sama_0283 0.51 -2.7
331,356 + Sama_0283 0.51 +0.0
331,426 + Sama_0283 0.62 -1.0
331,434 + Sama_0283 0.64 -0.3
331,435 - Sama_0283 0.64 -0.2
331,454 + Sama_0283 0.67 +0.2
331,474 - Sama_0283 0.70 -1.7
331,521 + Sama_0283 0.78 -0.1
331,521 + Sama_0283 0.78 -2.4
331,521 + Sama_0283 0.78 -2.6
331,521 + Sama_0283 0.78 +0.0
331,522 - Sama_0283 0.78 -0.3
331,522 - Sama_0283 0.78 -0.3
331,522 - Sama_0283 0.78 -2.0
331,522 - Sama_0283 0.78 -0.6
331,522 - Sama_0283 0.78 +0.5
331,522 - Sama_0283 0.78 -1.6
331,522 - Sama_0283 0.78 +2.3
331,522 - Sama_0283 0.78 -2.5

Or see this region's nucleotide sequence