Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0193 and Sama_0194 are separated by 122 nucleotides Sama_0194 and Sama_0195 are separated by 8 nucleotides Sama_0195 and Sama_R0004 are separated by 558 nucleotides
Sama_0193: Sama_0193 - tRNA (uracil-5-)-methyltransferase (RefSeq), at 221,311 to 222,408
_0193
Sama_0194: Sama_0194 - glutamate racemase (RefSeq), at 222,531 to 223,331
_0194
Sama_0195: Sama_0195 - RNA-binding protein (RefSeq), at 223,340 to 223,795
_0195
Sama_R0004: Sama_R0004 - 16S ribosomal RNA (RefSeq), at 224,354 to 225,890
_R0004
Position (kb) 223
224 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 222.377 kb on + strand at 222.377 kb on + strand at 222.378 kb on - strand at 222.378 kb on - strand at 222.378 kb on - strand at 222.378 kb on - strand at 222.427 kb on + strand at 222.447 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.463 kb on + strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.464 kb on - strand at 222.490 kb on + strand at 222.490 kb on + strand at 222.495 kb on + strand at 222.495 kb on + strand at 222.495 kb on + strand at 223.312 kb on + strand at 223.313 kb on - strand at 223.313 kb on - strand at 223.313 kb on - strand at 223.322 kb on + strand at 223.322 kb on + strand at 223.323 kb on - strand at 223.323 kb on - strand at 223.323 kb on - strand at 223.389 kb on - strand, within Sama_0195 at 223.389 kb on - strand, within Sama_0195 at 223.394 kb on + strand, within Sama_0195 at 223.394 kb on + strand, within Sama_0195 at 223.394 kb on + strand, within Sama_0195 at 223.394 kb on + strand, within Sama_0195 at 223.395 kb on - strand, within Sama_0195 at 223.395 kb on - strand, within Sama_0195 at 223.395 kb on - strand, within Sama_0195 at 223.416 kb on + strand, within Sama_0195 at 223.416 kb on + strand, within Sama_0195 at 223.416 kb on + strand, within Sama_0195 at 223.417 kb on - strand, within Sama_0195 at 223.417 kb on - strand, within Sama_0195 at 223.525 kb on + strand, within Sama_0195 at 223.537 kb on - strand, within Sama_0195 at 223.556 kb on + strand, within Sama_0195 at 223.556 kb on + strand, within Sama_0195 at 223.556 kb on + strand, within Sama_0195 at 223.556 kb on + strand, within Sama_0195 at 223.556 kb on + strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.557 kb on - strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.596 kb on + strand, within Sama_0195 at 223.597 kb on - strand, within Sama_0195 at 223.597 kb on - strand, within Sama_0195 at 223.597 kb on - strand, within Sama_0195 at 223.597 kb on - strand, within Sama_0195 at 223.597 kb on - strand, within Sama_0195 at 223.618 kb on + strand, within Sama_0195 at 223.618 kb on + strand, within Sama_0195 at 223.618 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.620 kb on + strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.621 kb on - strand, within Sama_0195 at 223.672 kb on + strand, within Sama_0195 at 223.672 kb on + strand, within Sama_0195 at 223.673 kb on - strand, within Sama_0195 at 223.673 kb on - strand, within Sama_0195 at 223.673 kb on - strand, within Sama_0195 at 223.676 kb on + strand, within Sama_0195 at 223.676 kb on + strand, within Sama_0195 at 223.676 kb on + strand, within Sama_0195 at 223.676 kb on + strand, within Sama_0195 at 223.677 kb on - strand, within Sama_0195 at 223.677 kb on - strand, within Sama_0195 at 223.694 kb on + strand, within Sama_0195 at 223.694 kb on + strand, within Sama_0195 at 223.694 kb on + strand, within Sama_0195 at 223.694 kb on + strand, within Sama_0195 at 223.695 kb on - strand, within Sama_0195 at 223.695 kb on - strand, within Sama_0195 at 223.695 kb on - strand, within Sama_0195 at 223.699 kb on + strand, within Sama_0195 at 223.700 kb on - strand, within Sama_0195 at 223.710 kb on + strand, within Sama_0195 at 223.710 kb on + strand, within Sama_0195 at 223.710 kb on + strand, within Sama_0195 at 223.710 kb on + strand, within Sama_0195 at 223.727 kb on + strand, within Sama_0195 at 223.727 kb on + strand, within Sama_0195 at 223.728 kb on - strand, within Sama_0195 at 223.728 kb on - strand, within Sama_0195 at 223.777 kb on + strand at 223.778 kb on - strand at 223.820 kb on - strand at 223.831 kb on - strand at 223.842 kb on - strand at 223.851 kb on + strand at 223.851 kb on + strand at 223.852 kb on - strand at 223.853 kb on + strand at 223.853 kb on + strand at 223.853 kb on + strand at 223.853 kb on + strand at 223.854 kb on - strand at 223.854 kb on - strand at 223.854 kb on - strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.855 kb on + strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.856 kb on - strand at 223.859 kb on - strand at 223.876 kb on + strand at 223.877 kb on - strand at 223.934 kb on - strand at 224.005 kb on - strand at 224.061 kb on + strand at 224.062 kb on - strand at 224.062 kb on - strand at 224.063 kb on + strand at 224.063 kb on + strand at 224.063 kb on + strand at 224.063 kb on + strand at 224.064 kb on - strand at 224.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 222,377 + +1.7 222,377 + +1.3 222,378 - -0.8 222,378 - +0.9 222,378 - -2.5 222,378 - +1.5 222,427 + +1.4 222,447 + -1.1 222,463 + -0.9 222,463 + -1.3 222,463 + +2.0 222,463 + -2.3 222,463 + -0.8 222,463 + +2.5 222,463 + +0.1 222,463 + +1.4 222,463 + -0.2 222,464 - -1.4 222,464 - -1.4 222,464 - +0.2 222,464 - +1.0 222,464 - +1.6 222,464 - -0.8 222,464 - +1.7 222,464 - -2.0 222,490 + -0.3 222,490 + +1.3 222,495 + -1.1 222,495 + -0.8 222,495 + -2.2 223,312 + -1.1 223,313 - -1.3 223,313 - -2.2 223,313 - -1.8 223,322 + -0.8 223,322 + -0.3 223,323 - -0.8 223,323 - +0.0 223,323 - +0.4 223,389 - Sama_0195 0.11 -0.1 223,389 - Sama_0195 0.11 -2.3 223,394 + Sama_0195 0.12 +1.4 223,394 + Sama_0195 0.12 +0.4 223,394 + Sama_0195 0.12 +2.0 223,394 + Sama_0195 0.12 -1.1 223,395 - Sama_0195 0.12 +1.2 223,395 - Sama_0195 0.12 +0.3 223,395 - Sama_0195 0.12 +2.9 223,416 + Sama_0195 0.17 +5.2 223,416 + Sama_0195 0.17 +0.1 223,416 + Sama_0195 0.17 -0.5 223,417 - Sama_0195 0.17 -0.0 223,417 - Sama_0195 0.17 +0.8 223,525 + Sama_0195 0.41 -1.5 223,537 - Sama_0195 0.43 -2.5 223,556 + Sama_0195 0.47 -0.1 223,556 + Sama_0195 0.47 +1.8 223,556 + Sama_0195 0.47 -1.5 223,556 + Sama_0195 0.47 +0.7 223,556 + Sama_0195 0.47 -1.3 223,557 - Sama_0195 0.48 -0.8 223,557 - Sama_0195 0.48 +0.0 223,557 - Sama_0195 0.48 -1.5 223,557 - Sama_0195 0.48 +1.5 223,557 - Sama_0195 0.48 +0.1 223,557 - Sama_0195 0.48 -0.2 223,557 - Sama_0195 0.48 +3.6 223,596 + Sama_0195 0.56 +0.4 223,596 + Sama_0195 0.56 -2.9 223,596 + Sama_0195 0.56 +3.1 223,596 + Sama_0195 0.56 +0.2 223,596 + Sama_0195 0.56 +0.6 223,596 + Sama_0195 0.56 -0.2 223,596 + Sama_0195 0.56 +0.8 223,597 - Sama_0195 0.56 -0.5 223,597 - Sama_0195 0.56 +0.5 223,597 - Sama_0195 0.56 +0.7 223,597 - Sama_0195 0.56 -1.4 223,597 - Sama_0195 0.56 +0.0 223,618 + Sama_0195 0.61 +2.0 223,618 + Sama_0195 0.61 +0.1 223,618 + Sama_0195 0.61 +1.2 223,620 + Sama_0195 0.61 +2.3 223,620 + Sama_0195 0.61 +0.2 223,620 + Sama_0195 0.61 +1.0 223,620 + Sama_0195 0.61 -0.3 223,620 + Sama_0195 0.61 +0.9 223,620 + Sama_0195 0.61 +2.0 223,620 + Sama_0195 0.61 +0.2 223,621 - Sama_0195 0.62 +0.6 223,621 - Sama_0195 0.62 -2.4 223,621 - Sama_0195 0.62 +0.8 223,621 - Sama_0195 0.62 +1.6 223,621 - Sama_0195 0.62 -1.4 223,621 - Sama_0195 0.62 +1.9 223,621 - Sama_0195 0.62 +1.1 223,621 - Sama_0195 0.62 -0.4 223,672 + Sama_0195 0.73 +1.7 223,672 + Sama_0195 0.73 +2.4 223,673 - Sama_0195 0.73 +0.5 223,673 - Sama_0195 0.73 +1.4 223,673 - Sama_0195 0.73 -2.5 223,676 + Sama_0195 0.74 +0.0 223,676 + Sama_0195 0.74 +0.2 223,676 + Sama_0195 0.74 +1.4 223,676 + Sama_0195 0.74 -0.8 223,677 - Sama_0195 0.74 -1.0 223,677 - Sama_0195 0.74 +1.5 223,694 + Sama_0195 0.78 +1.0 223,694 + Sama_0195 0.78 -0.0 223,694 + Sama_0195 0.78 -2.3 223,694 + Sama_0195 0.78 -0.3 223,695 - Sama_0195 0.78 -0.4 223,695 - Sama_0195 0.78 +1.3 223,695 - Sama_0195 0.78 +1.8 223,699 + Sama_0195 0.79 +0.8 223,700 - Sama_0195 0.79 -1.5 223,710 + Sama_0195 0.81 +2.5 223,710 + Sama_0195 0.81 -2.0 223,710 + Sama_0195 0.81 +0.9 223,710 + Sama_0195 0.81 -1.4 223,727 + Sama_0195 0.85 -1.3 223,727 + Sama_0195 0.85 -1.8 223,728 - Sama_0195 0.85 +0.6 223,728 - Sama_0195 0.85 +0.8 223,777 + -0.3 223,778 - +3.2 223,820 - +0.2 223,831 - +1.9 223,842 - -1.5 223,851 + +0.8 223,851 + -0.7 223,852 - +1.3 223,853 + +0.3 223,853 + -1.4 223,853 + -0.0 223,853 + -2.5 223,854 - +0.3 223,854 - -0.5 223,854 - +0.7 223,855 + -0.8 223,855 + +1.0 223,855 + +0.2 223,855 + -0.6 223,855 + -2.0 223,855 + +2.8 223,855 + +1.6 223,855 + -0.8 223,856 - -2.8 223,856 - -0.7 223,856 - -1.9 223,856 - -0.4 223,856 - -0.9 223,856 - -0.4 223,856 - -0.5 223,856 - -1.5 223,856 - -0.3 223,856 - -0.8 223,856 - -0.8 223,859 - -0.3 223,876 + +1.4 223,877 - -1.4 223,934 - -2.2 224,005 - -2.1 224,061 + +2.3 224,062 - +0.2 224,062 - +1.0 224,063 + -2.4 224,063 + -0.5 224,063 + -2.5 224,063 + +0.3 224,064 - -1.7 224,064 - +0.7
Or see this region's nucleotide sequence