Strain Fitness in Shewanella amazonensis SB2B around Sama_0128

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
142,351	-				+0.3
142,351	-				-1.1
142,351	-				+1.5
142,351	-				+1.2
142,362	+				-1.1
142,362	+				+1.1
142,363	-				-0.6
142,368	+				-2.3
142,368	+				+1.7
142,368	+				-3.2
142,422	+				-1.0
142,422	+				+0.2
142,422	+				+1.2
142,422	+				-0.5
142,422	+				-1.4
142,422	+				-1.0
142,422	+				+0.0
142,423	-				+0.7
142,423	-				-1.8
142,502	+				-3.0
142,502	+				-0.1
142,503	-				-1.0
142,512	+				-0.9
142,512	+				-2.3
142,512	+				-0.4
142,512	+				-0.5
142,512	+				-1.4
142,513	-				-1.7
142,513	-				-0.3
142,513	-				-0.5
142,513	-				+2.3
142,513	-				-0.2
142,513	-				+0.3
142,513	-				-0.2
142,533	+				-0.6
142,533	+				-2.4
142,534	-				+1.0
142,534	-				-0.3
142,534	-				-1.2
142,534	-				+0.3
142,534	-				-0.6
142,534	-				-2.8
142,534	-				+0.6
142,534	-				-0.7
142,554	+				-2.0
142,554	+				+2.2
142,555	-				-0.5
142,555	-				-0.6
142,555	-				+0.7
142,569	+				-0.3
142,597	-				-1.1
142,603	-				-0.1
142,661	+				+0.1
142,662	-				+0.5
142,710	-				-0.9
142,732	+				-0.3
142,732	+				-0.3
142,805	+				-0.2
142,805	+				+0.6
142,895	+		Sama_0127	0.19	+0.0
142,937	+		Sama_0127	0.28	+0.6
142,937	+		Sama_0127	0.28	-0.8
142,953	+		Sama_0127	0.31	-2.0
142,953	+		Sama_0127	0.31	-0.1
142,953	+		Sama_0127	0.31	-0.4
142,953	+		Sama_0127	0.31	-2.1
142,953	+		Sama_0127	0.31	-3.2
142,953	+		Sama_0127	0.31	+0.5
142,953	+		Sama_0127	0.31	-0.5
142,953	+		Sama_0127	0.31	-0.8
142,953	+		Sama_0127	0.31	+0.4
142,953	+		Sama_0127	0.31	-0.4
142,954	-		Sama_0127	0.32	-3.4
142,954	-		Sama_0127	0.32	+2.0
143,049	+		Sama_0127	0.52	+0.3
143,049	+		Sama_0127	0.52	+1.4
143,049	+		Sama_0127	0.52	-0.7
143,049	+		Sama_0127	0.52	-1.3
143,049	+		Sama_0127	0.52	-0.5
143,049	+		Sama_0127	0.52	+1.7
143,050	-		Sama_0127	0.52	-1.5
143,050	-		Sama_0127	0.52	+2.5
143,050	-		Sama_0127	0.52	-0.2
143,050	-		Sama_0127	0.52	+2.2
143,050	-		Sama_0127	0.52	-0.1
143,074	-		Sama_0127	0.58	+0.6
143,109	+		Sama_0127	0.65	-0.6
143,109	+		Sama_0127	0.65	-1.3
143,109	+		Sama_0127	0.65	-0.8
143,109	+		Sama_0127	0.65	-1.9
143,109	+		Sama_0127	0.65	-0.6
143,109	+		Sama_0127	0.65	+1.0
143,110	-		Sama_0127	0.65	-1.8
143,110	-		Sama_0127	0.65	-0.3
143,252	+				+0.5
143,253	-				+1.2
143,253	-				+0.2
143,253	-				+2.6
143,253	-				-1.7
143,257	+				-0.4
143,257	+				-0.0
143,258	-				-1.5
143,258	-				+1.2
143,265	+				-0.3
143,265	+				-0.3
143,265	+				+1.7
143,265	+				+0.0
143,265	+				-0.8
143,265	+				-1.5
143,265	+				-0.4
143,265	+				+0.1
143,266	-				-1.4
143,266	-				-0.5
143,266	-				-3.1
143,328	+				+0.2
143,328	+				-1.1
143,328	+				+2.0
143,329	-				+0.2
143,330	+				+2.6
143,331	-				-1.0
143,378	+				+1.0
143,411	+				+1.0
143,411	+				-1.9
143,411	+				-0.5
143,411	+				-2.5
143,411	+				-1.7
143,412	-				+1.9
143,412	-				-1.0
143,412	-				+2.9
143,412	-				+1.2
143,412	-				-1.1
143,412	-				+0.0
143,418	+		Sama_0128	0.10	+0.8
143,444	+		Sama_0128	0.14	-2.9
143,455	+		Sama_0128	0.16	+0.0
143,455	+		Sama_0128	0.16	-1.1
143,455	+		Sama_0128	0.16	-1.4
143,456	-		Sama_0128	0.16	-0.8
143,456	-		Sama_0128	0.16	-1.0
143,456	-		Sama_0128	0.16	+3.1
143,463	+		Sama_0128	0.17	+0.2
143,520	+		Sama_0128	0.26	-1.7
143,520	+		Sama_0128	0.26	+1.5
143,520	+		Sama_0128	0.26	+0.5
143,520	+		Sama_0128	0.26	-0.5
143,520	+		Sama_0128	0.26	-3.0
143,520	+		Sama_0128	0.26	+2.3
143,520	+		Sama_0128	0.26	-0.4
143,520	+		Sama_0128	0.26	-0.5
143,520	+		Sama_0128	0.26	-0.6
143,520	+		Sama_0128	0.26	-0.5
143,520	+		Sama_0128	0.26	+0.5
143,521	-		Sama_0128	0.26	-1.0
143,521	-		Sama_0128	0.26	+2.3
143,521	-		Sama_0128	0.26	-0.5
143,521	-		Sama_0128	0.26	-0.5
143,521	-		Sama_0128	0.26	+1.0
143,521	-		Sama_0128	0.26	-0.2
143,521	-		Sama_0128	0.26	-0.8
143,521	-		Sama_0128	0.26	-2.0
143,521	-		Sama_0128	0.26	-0.5
143,521	-		Sama_0128	0.26	+1.6
143,521	-		Sama_0128	0.26	-0.5
143,521	-		Sama_0128	0.26	+1.3
143,564	+		Sama_0128	0.32	-2.0
143,565	-		Sama_0128	0.32	-0.8
143,624	+		Sama_0128	0.41	-1.9
143,624	+		Sama_0128	0.41	-0.9
143,625	-		Sama_0128	0.42	-3.1
143,633	-		Sama_0128	0.43	+0.7
143,634	+		Sama_0128	0.43	-0.1
143,655	+		Sama_0128	0.46	-0.8
143,655	+		Sama_0128	0.46	-0.5
143,656	-		Sama_0128	0.46	+1.4
143,656	-		Sama_0128	0.46	+1.7
143,680	+		Sama_0128	0.50	+0.7
143,747	+		Sama_0128	0.60	-0.9
143,747	+		Sama_0128	0.60	-0.3
143,747	+		Sama_0128	0.60	+1.3
143,747	+		Sama_0128	0.60	+3.7
143,747	+		Sama_0128	0.60	+1.8
143,748	-		Sama_0128	0.60	-0.4
143,748	-		Sama_0128	0.60	+1.8
143,748	-		Sama_0128	0.60	-1.0
143,748	-		Sama_0128	0.60	-3.0
143,755	+		Sama_0128	0.61	+2.1
143,756	-		Sama_0128	0.61	-1.5
143,760	+		Sama_0128	0.62	-2.8
143,760	+		Sama_0128	0.62	-0.7
143,761	-		Sama_0128	0.62	+1.5
143,761	-		Sama_0128	0.62	-0.7
143,761	-		Sama_0128	0.62	-1.7
143,797	+		Sama_0128	0.68	-2.1
143,853	+		Sama_0128	0.76	-0.3
143,853	+		Sama_0128	0.76	-0.0
143,853	+		Sama_0128	0.76	+1.7
143,854	-		Sama_0128	0.76	+1.0
143,854	-		Sama_0128	0.76	+0.0
143,854	-		Sama_0128	0.76	+0.9
143,854	-		Sama_0128	0.76	-1.8
143,884	+		Sama_0128	0.81	+1.8
143,884	+		Sama_0128	0.81	+1.6
143,884	+		Sama_0128	0.81	-0.5
143,885	-		Sama_0128	0.81	+1.0
143,885	-		Sama_0128	0.81	+0.5
143,925	+		Sama_0128	0.87	+1.8
143,926	-		Sama_0128	0.87	+2.3
143,926	-		Sama_0128	0.87	-1.8
143,929	+		Sama_0128	0.88	-2.0
143,929	+		Sama_0128	0.88	+0.9
143,929	+		Sama_0128	0.88	-0.5
143,999	+				+1.6
144,000	-				-1.8
144,000	-				-1.9
144,000	-				-1.3
144,010	+				-0.5
144,010	+				+0.0
144,010	+				+0.8
144,010	+				-0.8
144,010	+				+4.9
144,010	+				-0.8
144,010	+				-1.1
144,010	+				-1.3
144,010	+				-2.3
144,010	+				-0.3
144,011	-				-0.9
144,011	-				+0.5
144,011	-				-0.3
144,011	-				-1.8
144,011	-				+0.4
144,011	-				-1.3
144,011	-				-0.5
144,059	+				-0.5
144,059	+				+0.8
144,060	-				-2.2
144,093	+				-0.5
144,093	+				+2.0
144,093	+				+0.1
144,093	+				+1.8
144,094	-				-0.5
144,094	-				+1.0
144,094	-				+0.0
144,094	-				+1.7
144,094	-				-1.1
144,094	-				+1.2
144,094	-				-1.5
144,095	+				-0.7
144,095	+				+2.6
144,095	+				-0.3
144,095	+				+0.5
144,095	+				-1.0
144,095	+				+0.2
144,095	+				+0.2
144,096	-				-0.9
144,096	-				+0.5
144,096	-				-1.5
144,122	+				-1.7
144,149	+				+0.5
144,149	+				-2.3
144,149	+				-1.1
144,150	-				+0.7
144,151	+				+0.3
144,151	+				+1.0
144,151	+				+0.9
144,152	-				-2.5
144,152	-				-1.7
144,152	-				-1.5
144,152	-				-0.4
144,152	-				-0.9
144,152	-				-1.3
144,161	-				-3.9
144,216	-				-0.3
144,216	-				+1.5
144,221	+				-0.8
144,221	+				-0.5
144,221	+				+0.0
144,221	+				-0.5
144,221	+				-0.5
144,221	+				-0.0
144,221	+				-2.6
144,221	+				-1.2
144,221	+				+1.1
144,221	+				+1.3
144,221	+				+1.8
144,221	+				+0.0
144,221	+				-2.0
144,221	+				+3.1
144,221	+				+1.1
144,221	+				+0.2
144,221	+				+0.3
144,221	+				+1.6
144,221	+				-0.9
144,221	+				-0.7
144,221	+				+1.2
144,221	+				-2.0
144,222	-				+3.7
144,222	-				-0.3
144,222	-				+0.4
144,222	-				-1.5
144,222	-				-0.2
144,222	-				+1.3
144,222	-				-1.5
144,222	-				+2.0
144,222	-				-0.3
144,222	-				-0.2
144,222	-				-1.8
144,222	-				-0.8
144,222	-				+0.2
144,222	-				-0.0
144,222	-				-1.4
144,222	-				+0.0
144,222	-				+1.0
144,222	-				+0.4
144,222	-				-0.1
144,222	-				+0.5
144,222	-				+1.7
144,254	-				+0.0
144,326	+				-0.3
144,327	-				+1.7
144,415	+		Sama_0129	0.18	+0.5
144,415	+		Sama_0129	0.18	-1.7
144,415	+		Sama_0129	0.18	+0.6
144,415	+		Sama_0129	0.18	+1.3
144,415	+		Sama_0129	0.18	-1.7
144,415	+		Sama_0129	0.18	-0.5
144,415	+		Sama_0129	0.18	-2.9
144,415	+		Sama_0129	0.18	-2.0
144,416	-		Sama_0129	0.18	-0.3
144,416	-		Sama_0129	0.18	+0.7
144,416	-		Sama_0129	0.18	+1.0
144,416	-		Sama_0129	0.18	+1.4
144,416	-		Sama_0129	0.18	+0.2
144,416	-		Sama_0129	0.18	-0.4
144,416	-		Sama_0129	0.18	-1.5
144,418	+		Sama_0129	0.18	+2.9
144,418	+		Sama_0129	0.18	-0.1
144,418	+		Sama_0129	0.18	+1.7
144,418	+		Sama_0129	0.18	-1.0
144,418	+		Sama_0129	0.18	-0.1
144,418	+		Sama_0129	0.18	-0.8
144,418	+		Sama_0129	0.18	+2.6
144,418	+		Sama_0129	0.18	-0.9
144,418	+		Sama_0129	0.18	-0.9
144,418	+		Sama_0129	0.18	-1.2
144,418	+		Sama_0129	0.18	+2.0
144,419	-		Sama_0129	0.18	-0.8
144,419	-		Sama_0129	0.18	+0.5
144,419	-		Sama_0129	0.18	+1.5
144,419	-		Sama_0129	0.18	-1.5
144,419	-		Sama_0129	0.18	-1.7
144,419	-		Sama_0129	0.18	-1.3
144,419	-		Sama_0129	0.18	-2.5
144,419	-		Sama_0129	0.18	+1.0
144,419	-		Sama_0129	0.18	+0.0
144,495	+		Sama_0129	0.29	-1.3
144,496	-		Sama_0129	0.29	-0.1
144,496	-		Sama_0129	0.29	+0.8
144,525	+		Sama_0129	0.33	+1.7
144,526	-		Sama_0129	0.33	+1.0
144,526	-		Sama_0129	0.33	-0.7
144,526	-		Sama_0129	0.33	-0.1
144,527	+		Sama_0129	0.33	+0.1
144,527	+		Sama_0129	0.33	-2.7
144,527	+		Sama_0129	0.33	-0.9
144,527	+		Sama_0129	0.33	-0.9
144,527	+		Sama_0129	0.33	-0.9
144,527	+		Sama_0129	0.33	-0.3
144,527	+		Sama_0129	0.33	+1.8
144,527	+		Sama_0129	0.33	-0.6
144,527	+		Sama_0129	0.33	-1.0
144,528	-		Sama_0129	0.33	-1.6
144,528	-		Sama_0129	0.33	-2.8
144,528	-		Sama_0129	0.33	+2.7
144,528	-		Sama_0129	0.33	+2.0
144,528	-		Sama_0129	0.33	-1.4
144,541	+		Sama_0129	0.35	-0.0
144,541	+		Sama_0129	0.35	-1.3
144,541	+		Sama_0129	0.35	-0.5
144,541	+		Sama_0129	0.35	+0.2
144,554	+		Sama_0129	0.37	-2.4
144,555	-		Sama_0129	0.37	+0.6
144,568	+		Sama_0129	0.39	-1.9
144,568	+		Sama_0129	0.39	+0.0
144,568	+		Sama_0129	0.39	-2.0
144,653	+		Sama_0129	0.50	+0.7
144,653	+		Sama_0129	0.50	+0.2
144,654	-		Sama_0129	0.50	+0.9
144,654	-		Sama_0129	0.50	-0.5
144,654	-		Sama_0129	0.50	-1.7
144,654	-		Sama_0129	0.50	-2.4
144,669	-		Sama_0129	0.52	+1.4
144,676	+		Sama_0129	0.53	-0.9
144,676	+		Sama_0129	0.53	+0.8
144,676	+		Sama_0129	0.53	-2.6
144,676	+		Sama_0129	0.53	-1.4
144,676	+		Sama_0129	0.53	+1.0
144,676	+		Sama_0129	0.53	-1.7
144,676	+		Sama_0129	0.53	-0.9
144,676	+		Sama_0129	0.53	+0.9
144,676	+		Sama_0129	0.53	+0.2
144,676	+		Sama_0129	0.53	-1.0
144,677	-		Sama_0129	0.53	-0.2
144,677	-		Sama_0129	0.53	+0.3
144,680	+		Sama_0129	0.54	-1.5
144,680	+		Sama_0129	0.54	+1.9
144,680	+		Sama_0129	0.54	-2.0
144,680	+		Sama_0129	0.54	-1.1
144,680	+		Sama_0129	0.54	-0.8
144,680	+		Sama_0129	0.54	-1.0
144,680	+		Sama_0129	0.54	-2.0
144,680	+		Sama_0129	0.54	+1.8
144,680	+		Sama_0129	0.54	+0.0
144,680	+		Sama_0129	0.54	+0.8
144,681	-		Sama_0129	0.54	-2.0
144,681	-		Sama_0129	0.54	+0.9
144,681	-		Sama_0129	0.54	+1.8
144,681	-		Sama_0129	0.54	-1.4
144,681	-		Sama_0129	0.54	+0.1
144,681	-		Sama_0129	0.54	+1.5
144,681	-		Sama_0129	0.54	+0.3
144,681	-		Sama_0129	0.54	-1.4
144,681	-		Sama_0129	0.54	-0.3
144,685	+		Sama_0129	0.55	+2.6
144,685	+		Sama_0129	0.55	+0.8
144,685	+		Sama_0129	0.55	+0.6
144,685	+		Sama_0129	0.55	+1.5
144,686	-		Sama_0129	0.55	-0.5
144,686	-		Sama_0129	0.55	-0.1
144,686	-		Sama_0129	0.55	-0.6
144,710	-		Sama_0129	0.58	-1.7
144,718	+		Sama_0129	0.59	+0.8
144,718	+		Sama_0129	0.59	-2.8
144,718	+		Sama_0129	0.59	+0.8
144,718	+		Sama_0129	0.59	+0.0
144,718	+		Sama_0129	0.59	+3.5
144,718	+		Sama_0129	0.59	-1.7
144,718	+		Sama_0129	0.59	-1.1
144,718	+		Sama_0129	0.59	+0.5
144,719	-		Sama_0129	0.59	+0.5
144,719	-		Sama_0129	0.59	+1.2
144,719	-		Sama_0129	0.59	-2.1
144,719	-		Sama_0129	0.59	-0.3
144,719	-		Sama_0129	0.59	+1.6
144,719	-		Sama_0129	0.59	+0.9
144,719	-		Sama_0129	0.59	-1.8
144,719	-		Sama_0129	0.59	+1.3
144,721	+		Sama_0129	0.59	+1.0
144,721	+		Sama_0129	0.59	-1.0
144,721	+		Sama_0129	0.59	-0.8
144,721	+		Sama_0129	0.59	+1.7
144,721	+		Sama_0129	0.59	-0.8
144,721	+		Sama_0129	0.59	-2.0
144,721	+		Sama_0129	0.59	-0.3
144,722	-		Sama_0129	0.60	-0.0
144,722	-		Sama_0129	0.60	+0.2
144,722	-		Sama_0129	0.60	-0.2
144,722	-		Sama_0129	0.60	-1.1
144,722	-		Sama_0129	0.60	-1.3
144,747	+		Sama_0129	0.63	-1.8
144,747	+		Sama_0129	0.63	+0.5
144,747	+		Sama_0129	0.63	+0.7
144,747	+		Sama_0129	0.63	+2.5
144,747	+		Sama_0129	0.63	-0.1
144,747	+		Sama_0129	0.63	-2.0
144,748	-		Sama_0129	0.63	-0.1
144,748	-		Sama_0129	0.63	-0.5
144,748	-		Sama_0129	0.63	+0.3
144,748	-		Sama_0129	0.63	+0.6
144,748	-		Sama_0129	0.63	-0.8
144,774	+		Sama_0129	0.67	-1.8
144,774	+		Sama_0129	0.67	+0.0
144,794	-		Sama_0129	0.69	-2.7
144,825	-		Sama_0129	0.74	-1.2
144,942	+		Sama_0129	0.90	+1.1
144,943	-		Sama_0129	0.90	-0.9
144,953	+				-1.9
144,954	-				-1.8