Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0109 and Sama_0110 are separated by 204 nucleotides Sama_0110 and Sama_0111 are separated by 18 nucleotides Sama_0111 and Sama_0112 are separated by 136 nucleotides Sama_0112 and Sama_0113 overlap by 4 nucleotides
Sama_0109: Sama_0109 - glycosyl transferase, group 1 family protein (RefSeq), at 122,136 to 123,344
_0109
Sama_0110: Sama_0110 - pantetheine-phosphate adenylyltransferase (RefSeq), at 123,549 to 124,118
_0110
Sama_0111: Sama_0111 - hypothetical protein (RefSeq), at 124,137 to 125,621
_0111
Sama_0112: Sama_0112 - glycosyl transferase, group 2 family protein (RefSeq), at 125,758 to 126,489
_0112
Sama_0113: Sama_0113 - hypothetical protein (RefSeq), at 126,486 to 127,163
_0113
Position (kb) 124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 123.139 kb on + strand, within Sama_0109 at 123.139 kb on + strand, within Sama_0109 at 123.139 kb on + strand, within Sama_0109 at 123.139 kb on + strand, within Sama_0109 at 123.139 kb on + strand, within Sama_0109 at 123.139 kb on + strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.142 kb on - strand, within Sama_0109 at 123.142 kb on - strand, within Sama_0109 at 123.161 kb on + strand, within Sama_0109 at 123.161 kb on + strand, within Sama_0109 at 123.162 kb on - strand, within Sama_0109 at 123.275 kb on - strand at 123.283 kb on + strand at 123.283 kb on + strand at 123.284 kb on - strand at 123.284 kb on - strand at 123.307 kb on + strand at 123.308 kb on - strand at 123.327 kb on + strand at 123.327 kb on + strand at 123.327 kb on + strand at 123.327 kb on + strand at 123.328 kb on - strand at 123.328 kb on - strand at 123.328 kb on - strand at 123.379 kb on + strand at 123.380 kb on - strand at 123.380 kb on - strand at 123.380 kb on - strand at 123.382 kb on + strand at 123.484 kb on + strand at 123.484 kb on + strand at 123.485 kb on - strand at 123.485 kb on - strand at 123.488 kb on + strand at 123.488 kb on + strand at 123.488 kb on + strand at 123.488 kb on + strand at 123.489 kb on - strand at 123.563 kb on + strand at 123.563 kb on + strand at 123.563 kb on + strand at 123.563 kb on + strand at 123.563 kb on + strand at 123.563 kb on + strand at 123.564 kb on - strand at 123.564 kb on - strand at 123.564 kb on - strand at 123.564 kb on - strand at 123.607 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 124.093 kb on + strand at 124.093 kb on + strand at 124.094 kb on - strand at 124.110 kb on - strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.125 kb on - strand at 124.136 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.153 kb on + strand at 124.153 kb on + strand at 125.692 kb on + strand at 125.750 kb on + strand at 125.773 kb on - strand at 125.773 kb on - strand at 125.801 kb on + strand at 125.801 kb on + strand at 125.801 kb on + strand at 125.801 kb on + strand at 125.801 kb on + strand at 125.802 kb on - strand at 125.802 kb on - strand at 125.802 kb on - strand at 125.802 kb on - strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.806 kb on - strand at 125.806 kb on - strand at 125.806 kb on - strand at 125.858 kb on + strand, within Sama_0112 at 125.858 kb on + strand, within Sama_0112 at 125.858 kb on + strand, within Sama_0112 at 125.858 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.865 kb on - strand, within Sama_0112 at 125.865 kb on - strand, within Sama_0112 at 125.865 kb on - strand, within Sama_0112 at 125.865 kb on - strand, within Sama_0112 at 125.931 kb on + strand, within Sama_0112 at 125.931 kb on + strand, within Sama_0112 at 125.932 kb on - strand, within Sama_0112 at 125.932 kb on - strand, within Sama_0112 at 125.932 kb on - strand, within Sama_0112 at 125.942 kb on + strand, within Sama_0112 at 125.942 kb on + strand, within Sama_0112 at 125.942 kb on + strand, within Sama_0112 at 125.943 kb on - strand, within Sama_0112 at 125.943 kb on - strand, within Sama_0112 at 125.943 kb on - strand, within Sama_0112 at 125.973 kb on + strand, within Sama_0112 at 125.973 kb on + strand, within Sama_0112 at 125.974 kb on - strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.982 kb on - strand, within Sama_0112 at 125.982 kb on - strand, within Sama_0112 at 125.982 kb on - strand, within Sama_0112 at 125.982 kb on - strand, within Sama_0112 at 125.993 kb on + strand, within Sama_0112 at 125.993 kb on + strand, within Sama_0112 at 125.993 kb on + strand, within Sama_0112 at 125.994 kb on - strand, within Sama_0112 at 126.108 kb on + strand, within Sama_0112 at 126.108 kb on + strand, within Sama_0112 at 126.123 kb on + strand, within Sama_0112 at 126.124 kb on - strand, within Sama_0112 at 126.124 kb on - strand, within Sama_0112 at 126.177 kb on + strand, within Sama_0112 at 126.177 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.277 kb on - strand, within Sama_0112 at 126.277 kb on - strand, within Sama_0112 at 126.277 kb on - strand, within Sama_0112 at 126.277 kb on - strand, within Sama_0112 at 126.277 kb on - strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.287 kb on - strand, within Sama_0112 at 126.287 kb on - strand, within Sama_0112 at 126.287 kb on - strand, within Sama_0112 at 126.366 kb on - strand, within Sama_0112 at 126.373 kb on + strand, within Sama_0112 at 126.373 kb on + strand, within Sama_0112 at 126.373 kb on + strand, within Sama_0112 at 126.373 kb on + strand, within Sama_0112 at 126.373 kb on + strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.449 kb on + strand at 126.449 kb on + strand at 126.449 kb on + strand at 126.449 kb on + strand at 126.449 kb on + strand at 126.450 kb on - strand at 126.450 kb on - strand at 126.450 kb on - strand at 126.450 kb on - strand at 126.450 kb on - strand at 126.450 kb on - strand at 126.475 kb on + strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.518 kb on - strand at 126.518 kb on - strand at 126.518 kb on - strand at 126.518 kb on - strand at 126.524 kb on + strand at 126.524 kb on + strand at 126.524 kb on + strand at 126.524 kb on + strand at 126.544 kb on + strand at 126.544 kb on + strand at 126.544 kb on + strand at 126.544 kb on + strand at 126.544 kb on + strand at 126.544 kb on + strand at 126.545 kb on - strand at 126.545 kb on - strand at 126.545 kb on - strand at 126.545 kb on - strand at 126.545 kb on - strand at 126.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 123,139 + Sama_0109 0.83 -1.4 123,139 + Sama_0109 0.83 -2.4 123,139 + Sama_0109 0.83 -2.0 123,139 + Sama_0109 0.83 +2.0 123,139 + Sama_0109 0.83 +0.3 123,139 + Sama_0109 0.83 -1.1 123,140 - Sama_0109 0.83 -0.9 123,140 - Sama_0109 0.83 -2.6 123,140 - Sama_0109 0.83 -0.3 123,140 - Sama_0109 0.83 -1.4 123,140 - Sama_0109 0.83 -2.3 123,140 - Sama_0109 0.83 +2.2 123,140 - Sama_0109 0.83 -1.8 123,140 - Sama_0109 0.83 +1.6 123,140 - Sama_0109 0.83 -0.8 123,140 - Sama_0109 0.83 -1.0 123,140 - Sama_0109 0.83 -1.3 123,140 - Sama_0109 0.83 -0.3 123,140 - Sama_0109 0.83 -1.6 123,140 - Sama_0109 0.83 -1.3 123,140 - Sama_0109 0.83 +3.4 123,142 - Sama_0109 0.83 -1.1 123,142 - Sama_0109 0.83 -2.0 123,161 + Sama_0109 0.85 -0.7 123,161 + Sama_0109 0.85 -1.3 123,162 - Sama_0109 0.85 -0.4 123,275 - -3.0 123,283 + -0.9 123,283 + -1.2 123,284 - -0.9 123,284 - +0.9 123,307 + -0.3 123,308 - -1.0 123,327 + -2.2 123,327 + -1.5 123,327 + -1.4 123,327 + -1.7 123,328 - -1.8 123,328 - -1.8 123,328 - -1.3 123,379 + -2.1 123,380 - -1.1 123,380 - +0.6 123,380 - +1.1 123,382 + -3.2 123,484 + -1.5 123,484 + +0.6 123,485 - +2.0 123,485 - +1.3 123,488 + -1.5 123,488 + +0.1 123,488 + +1.0 123,488 + -2.5 123,489 - -0.9 123,563 + +1.8 123,563 + -2.1 123,563 + -1.5 123,563 + +2.4 123,563 + -2.5 123,563 + -2.0 123,564 - -1.0 123,564 - +1.3 123,564 - -1.0 123,564 - -1.1 123,607 + Sama_0110 0.10 -0.1 123,630 + Sama_0110 0.14 -1.1 123,630 + Sama_0110 0.14 -2.0 123,630 + Sama_0110 0.14 -2.8 123,630 + Sama_0110 0.14 +0.0 123,630 + Sama_0110 0.14 -1.4 123,630 + Sama_0110 0.14 +0.2 123,630 + Sama_0110 0.14 -0.2 123,630 + Sama_0110 0.14 -1.2 123,630 + Sama_0110 0.14 -0.8 123,630 + Sama_0110 0.14 +1.0 123,630 + Sama_0110 0.14 -1.4 123,630 + Sama_0110 0.14 -3.2 123,630 + Sama_0110 0.14 -2.0 123,630 + Sama_0110 0.14 -2.6 123,630 + Sama_0110 0.14 +0.1 123,632 + Sama_0110 0.15 +0.6 123,632 + Sama_0110 0.15 -1.3 123,632 + Sama_0110 0.15 -0.8 123,632 + Sama_0110 0.15 -0.3 123,632 + Sama_0110 0.15 -1.1 123,632 + Sama_0110 0.15 -2.0 123,632 + Sama_0110 0.15 -3.3 124,093 + +4.2 124,093 + -1.3 124,094 - -1.3 124,110 - -0.8 124,124 + -0.1 124,124 + -1.5 124,124 + +0.2 124,124 + +1.6 124,124 + -0.0 124,124 + +0.5 124,125 - -2.3 124,136 + -0.5 124,143 + -0.6 124,143 + +1.5 124,143 + +0.6 124,143 + +1.9 124,143 + +1.0 124,143 + -1.4 124,143 + -2.2 124,153 + -1.5 124,153 + -2.5 125,692 + -0.1 125,750 + +0.2 125,773 - -0.1 125,773 - +1.4 125,801 + -2.3 125,801 + +0.4 125,801 + +2.0 125,801 + -0.2 125,801 + +0.5 125,802 - +1.0 125,802 - -1.4 125,802 - -1.1 125,802 - +1.0 125,805 + +0.1 125,805 + +0.2 125,805 + -1.7 125,805 + -1.8 125,805 + +0.3 125,805 + +1.8 125,805 + -1.1 125,805 + -2.3 125,805 + -0.1 125,805 + +1.0 125,805 + +0.9 125,805 + +0.8 125,805 + +0.7 125,806 - -1.1 125,806 - +0.7 125,806 - +1.0 125,858 + Sama_0112 0.14 +0.8 125,858 + Sama_0112 0.14 -1.8 125,858 + Sama_0112 0.14 -2.2 125,858 + Sama_0112 0.14 -0.3 125,864 + Sama_0112 0.14 -0.8 125,864 + Sama_0112 0.14 -1.9 125,864 + Sama_0112 0.14 -0.9 125,864 + Sama_0112 0.14 +0.3 125,864 + Sama_0112 0.14 -1.8 125,864 + Sama_0112 0.14 +0.6 125,864 + Sama_0112 0.14 -1.3 125,865 - Sama_0112 0.15 -2.3 125,865 - Sama_0112 0.15 -0.5 125,865 - Sama_0112 0.15 +1.3 125,865 - Sama_0112 0.15 -1.1 125,931 + Sama_0112 0.24 +1.4 125,931 + Sama_0112 0.24 -0.4 125,932 - Sama_0112 0.24 -2.0 125,932 - Sama_0112 0.24 +0.6 125,932 - Sama_0112 0.24 -1.1 125,942 + Sama_0112 0.25 +0.4 125,942 + Sama_0112 0.25 -0.0 125,942 + Sama_0112 0.25 +1.0 125,943 - Sama_0112 0.25 -0.5 125,943 - Sama_0112 0.25 +0.0 125,943 - Sama_0112 0.25 -1.3 125,973 + Sama_0112 0.29 +0.7 125,973 + Sama_0112 0.29 +1.3 125,974 - Sama_0112 0.30 -0.5 125,981 + Sama_0112 0.30 +0.3 125,981 + Sama_0112 0.30 -2.0 125,981 + Sama_0112 0.30 -0.6 125,981 + Sama_0112 0.30 -1.5 125,981 + Sama_0112 0.30 -0.5 125,981 + Sama_0112 0.30 -1.3 125,982 - Sama_0112 0.31 -0.7 125,982 - Sama_0112 0.31 -2.5 125,982 - Sama_0112 0.31 +0.4 125,982 - Sama_0112 0.31 -2.0 125,993 + Sama_0112 0.32 -1.4 125,993 + Sama_0112 0.32 -0.8 125,993 + Sama_0112 0.32 +0.1 125,994 - Sama_0112 0.32 -1.1 126,108 + Sama_0112 0.48 -0.6 126,108 + Sama_0112 0.48 +0.4 126,123 + Sama_0112 0.50 -1.7 126,124 - Sama_0112 0.50 +0.1 126,124 - Sama_0112 0.50 -0.5 126,177 + Sama_0112 0.57 -1.7 126,177 + Sama_0112 0.57 +2.0 126,276 + Sama_0112 0.71 +1.7 126,276 + Sama_0112 0.71 +0.0 126,276 + Sama_0112 0.71 -0.5 126,276 + Sama_0112 0.71 -0.3 126,276 + Sama_0112 0.71 -0.1 126,276 + Sama_0112 0.71 +1.7 126,276 + Sama_0112 0.71 +0.5 126,276 + Sama_0112 0.71 +1.4 126,276 + Sama_0112 0.71 +1.9 126,277 - Sama_0112 0.71 +1.4 126,277 - Sama_0112 0.71 +0.2 126,277 - Sama_0112 0.71 +0.4 126,277 - Sama_0112 0.71 -2.8 126,277 - Sama_0112 0.71 -0.2 126,286 + Sama_0112 0.72 -3.0 126,286 + Sama_0112 0.72 -1.0 126,286 + Sama_0112 0.72 +0.5 126,286 + Sama_0112 0.72 -3.0 126,286 + Sama_0112 0.72 +0.1 126,286 + Sama_0112 0.72 -1.8 126,286 + Sama_0112 0.72 -0.8 126,287 - Sama_0112 0.72 -0.6 126,287 - Sama_0112 0.72 -1.8 126,287 - Sama_0112 0.72 -0.0 126,366 - Sama_0112 0.83 -0.9 126,373 + Sama_0112 0.84 -0.3 126,373 + Sama_0112 0.84 +0.6 126,373 + Sama_0112 0.84 +0.0 126,373 + Sama_0112 0.84 +0.5 126,373 + Sama_0112 0.84 -1.3 126,374 - Sama_0112 0.84 +1.0 126,374 - Sama_0112 0.84 -1.4 126,374 - Sama_0112 0.84 -1.3 126,374 - Sama_0112 0.84 +0.2 126,374 - Sama_0112 0.84 -2.1 126,374 - Sama_0112 0.84 +0.7 126,374 - Sama_0112 0.84 -0.7 126,374 - Sama_0112 0.84 -0.3 126,449 + +0.2 126,449 + -0.8 126,449 + -2.6 126,449 + -1.0 126,449 + +1.3 126,450 - -0.2 126,450 - -0.0 126,450 - +0.4 126,450 - +3.6 126,450 - +0.9 126,450 - +0.9 126,475 + -1.3 126,513 - -1.0 126,513 - +0.5 126,513 - +0.4 126,518 - +0.5 126,518 - -0.2 126,518 - -2.0 126,518 - +0.4 126,524 + -1.0 126,524 + -1.1 126,524 + -1.7 126,524 + -1.5 126,544 + -0.8 126,544 + +0.5 126,544 + -0.4 126,544 + -2.7 126,544 + -0.2 126,544 + +1.2 126,545 - +0.1 126,545 - -1.2 126,545 - +0.1 126,545 - -0.8 126,545 - -1.8 126,545 - -0.1
Or see this region's nucleotide sequence