Strain Fitness in Shewanella amazonensis SB2B around Sama_0073

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
77,896	+				-0.7
77,896	+				-1.5
77,896	+				-2.7
77,896	+				+1.9
77,896	+				-0.5
77,896	+				-1.3
77,897	-				-0.1
77,897	-				+0.7
77,897	-				-0.8
77,897	-				+0.7
77,906	+				-1.7
77,906	+				-0.8
77,906	+				-0.7
77,906	+				+0.6
77,906	+				-0.5
77,907	-				-2.0
77,907	-				-0.9
77,909	+				+3.3
77,909	+				+0.7
77,909	+				-0.5
77,909	+				-1.0
77,910	-				-0.9
77,910	-				-0.5
77,933	+				-1.2
77,934	-				-0.3
77,934	-				-0.3
77,934	-				-1.1
77,934	-				-0.1
77,934	-				-1.4
77,934	-				-3.0
77,935	+				-2.5
77,936	-				-0.5
77,936	-				+0.8
77,936	-				-0.8
78,123	+	pbpG	Sama_0072	0.25	-0.8
78,169	+	pbpG	Sama_0072	0.30	-1.4
78,170	-	pbpG	Sama_0072	0.30	+0.5
78,184	+	pbpG	Sama_0072	0.32	-0.8
78,184	+	pbpG	Sama_0072	0.32	-0.1
78,184	+	pbpG	Sama_0072	0.32	-0.1
78,184	+	pbpG	Sama_0072	0.32	+3.4
78,185	-	pbpG	Sama_0072	0.32	-2.3
78,185	-	pbpG	Sama_0072	0.32	+1.8
78,212	+	pbpG	Sama_0072	0.35	-0.5
78,212	+	pbpG	Sama_0072	0.35	+0.1
78,212	+	pbpG	Sama_0072	0.35	-1.3
78,213	-	pbpG	Sama_0072	0.35	-0.7
78,213	-	pbpG	Sama_0072	0.35	-2.7
78,213	-	pbpG	Sama_0072	0.35	-2.2
78,213	-	pbpG	Sama_0072	0.35	-1.0
78,213	-	pbpG	Sama_0072	0.35	+1.7
78,213	-	pbpG	Sama_0072	0.35	-0.4
78,213	-	pbpG	Sama_0072	0.35	-1.0
78,213	-	pbpG	Sama_0072	0.35	+0.4
78,213	-	pbpG	Sama_0072	0.35	-2.7
78,213	-	pbpG	Sama_0072	0.35	+1.8
78,240	+	pbpG	Sama_0072	0.38	-0.5
78,247	+	pbpG	Sama_0072	0.39	+0.9
78,248	-	pbpG	Sama_0072	0.39	-0.5
78,290	+	pbpG	Sama_0072	0.43	-0.1
78,303	+	pbpG	Sama_0072	0.45	-0.5
78,344	+	pbpG	Sama_0072	0.49	-2.6
78,391	+	pbpG	Sama_0072	0.54	-2.1
78,392	-	pbpG	Sama_0072	0.54	-0.1
78,617	+	pbpG	Sama_0072	0.79	-1.9
78,617	+	pbpG	Sama_0072	0.79	-2.6
78,617	+	pbpG	Sama_0072	0.79	-0.5
78,618	-	pbpG	Sama_0072	0.79	-1.0
78,638	+	pbpG	Sama_0072	0.81	+0.6
78,638	+	pbpG	Sama_0072	0.81	+0.7
78,646	-	pbpG	Sama_0072	0.82	+1.5
78,646	+	pbpG	Sama_0072	0.82	-0.3
78,647	-	pbpG	Sama_0072	0.82	-0.5
78,647	-	pbpG	Sama_0072	0.82	-1.0
78,647	-	pbpG	Sama_0072	0.82	-1.3
78,647	-	pbpG	Sama_0072	0.82	-0.8
78,688	+	pbpG	Sama_0072	0.87	-2.0
78,688	+	pbpG	Sama_0072	0.87	-2.7
78,688	+	pbpG	Sama_0072	0.87	-3.5
78,689	-	pbpG	Sama_0072	0.87	+0.4
78,689	-	pbpG	Sama_0072	0.87	-2.0
78,689	-	pbpG	Sama_0072	0.87	+2.2
78,689	-	pbpG	Sama_0072	0.87	-1.2
78,689	-	pbpG	Sama_0072	0.87	-1.0
78,784	+				-0.1
78,784	+				-0.9
78,785	-				+0.9
78,785	-				-0.8
78,822	+				+2.6
78,822	+				-1.7
78,823	-				+2.5
78,823	-				+0.9
78,856	+				-1.8
78,867	+				+0.5
78,867	+				-0.2
78,867	+				+0.8
78,867	+				-0.7
78,867	+				+0.8
78,868	-				+0.9
78,868	-				+3.6
79,033	+		Sama_0073	0.32	-0.5
79,040	+		Sama_0073	0.33	-1.3
79,041	-		Sama_0073	0.34	-2.9
79,041	-		Sama_0073	0.34	-0.1
79,050	+		Sama_0073	0.36	+1.0
79,050	+		Sama_0073	0.36	-0.5
79,051	-		Sama_0073	0.36	+1.2
79,066	+		Sama_0073	0.39	-0.8
79,066	+		Sama_0073	0.39	-1.6
79,066	+		Sama_0073	0.39	-0.5
79,066	+		Sama_0073	0.39	+0.6
79,066	+		Sama_0073	0.39	-0.6
79,066	+		Sama_0073	0.39	-2.5
79,066	+		Sama_0073	0.39	+0.7
79,066	+		Sama_0073	0.39	+0.1
79,066	+		Sama_0073	0.39	-2.0
79,066	+		Sama_0073	0.39	-4.1
79,066	+		Sama_0073	0.39	+1.1
79,067	-		Sama_0073	0.40	+2.8
79,067	-		Sama_0073	0.40	+2.6
79,067	-		Sama_0073	0.40	-0.7
79,067	-		Sama_0073	0.40	+1.2
79,067	-		Sama_0073	0.40	-0.7
79,069	-		Sama_0073	0.40	-0.8
79,069	-		Sama_0073	0.40	-2.5
79,106	+		Sama_0073	0.49	-1.4
79,107	-		Sama_0073	0.49	-0.5
79,124	+		Sama_0073	0.53	-2.3
79,124	+		Sama_0073	0.53	+0.1
79,124	+		Sama_0073	0.53	-0.4
79,124	+		Sama_0073	0.53	-1.3
79,124	+		Sama_0073	0.53	-0.8
79,124	+		Sama_0073	0.53	-1.0
79,125	-		Sama_0073	0.53	-2.7
79,125	-		Sama_0073	0.53	-2.0
79,125	-		Sama_0073	0.53	-1.4
79,125	-		Sama_0073	0.53	-0.6
79,168	+		Sama_0073	0.63	+0.6
79,169	+		Sama_0073	0.63	-0.3
79,169	+		Sama_0073	0.63	+1.2
79,169	+		Sama_0073	0.63	-1.0
79,169	+		Sama_0073	0.63	-1.3
79,169	+		Sama_0073	0.63	-0.1
79,169	+		Sama_0073	0.63	-1.4
79,169	+		Sama_0073	0.63	+0.5
79,169	+		Sama_0073	0.63	-1.2
79,169	+		Sama_0073	0.63	-2.0
79,169	+		Sama_0073	0.63	-0.7
79,169	+		Sama_0073	0.63	-1.0
79,170	-		Sama_0073	0.63	-2.0
79,170	-		Sama_0073	0.63	-1.5
79,170	-		Sama_0073	0.63	+0.9
79,170	-		Sama_0073	0.63	-1.9
79,170	-		Sama_0073	0.63	-0.6
79,170	-		Sama_0073	0.63	-0.0
79,170	-		Sama_0073	0.63	+0.9
79,235	+		Sama_0073	0.78	+0.5
79,236	-		Sama_0073	0.78	-1.4
79,236	-		Sama_0073	0.78	-0.8
79,236	-		Sama_0073	0.78	-1.3
79,240	+		Sama_0073	0.79	-0.4
79,240	+		Sama_0073	0.79	-0.9
79,241	-		Sama_0073	0.80	+3.2
79,246	-		Sama_0073	0.81	-0.3
79,246	-		Sama_0073	0.81	+0.6
79,246	-		Sama_0073	0.81	-0.2
79,363	-				+0.0
79,363	-				+2.3
79,436	+				-2.0
79,437	-				-0.7
79,437	-				-1.0
79,437	-				+0.6
79,476	-				-0.5
79,606	-		Sama_0074	0.25	-1.4
79,619	+		Sama_0074	0.27	+1.2
79,620	-		Sama_0074	0.27	+1.9
79,620	-		Sama_0074	0.27	-0.8
79,620	-		Sama_0074	0.27	+0.5
79,748	+		Sama_0074	0.46	-0.8
79,749	-		Sama_0074	0.46	+1.3
79,772	+		Sama_0074	0.49	+1.7
79,772	+		Sama_0074	0.49	-1.4
79,772	+		Sama_0074	0.49	+0.8
79,773	-		Sama_0074	0.50	-0.8
79,780	+		Sama_0074	0.51	-2.0
79,781	-		Sama_0074	0.51	+0.0
79,781	-		Sama_0074	0.51	+0.2
79,791	+		Sama_0074	0.52	+0.1
79,802	+		Sama_0074	0.54	-3.0
79,802	+		Sama_0074	0.54	+0.6
79,803	-		Sama_0074	0.54	-1.4
79,803	-		Sama_0074	0.54	-1.1
79,803	-		Sama_0074	0.54	+3.5
79,803	-		Sama_0074	0.54	-1.0
79,803	-		Sama_0074	0.54	-0.2
79,832	+		Sama_0074	0.58	-2.3
79,833	-		Sama_0074	0.58	-3.1
79,881	+		Sama_0074	0.65	+1.0
79,881	+		Sama_0074	0.65	-0.7
79,953	+		Sama_0074	0.76	-1.1
79,976	+		Sama_0074	0.79	+1.7
79,977	-		Sama_0074	0.80	+0.4
80,037	-		Sama_0074	0.88	-2.1
80,058	+				-0.5
80,058	+				+0.9
80,093	-				+0.1
80,098	+				-0.0
80,099	-				-0.3
80,099	-				-1.3
80,119	-				+1.0
80,124	+				-0.8
80,124	+				-2.3
80,124	+				-1.7
80,124	+				+0.1
80,124	+				-0.7
80,124	+				+1.2
80,124	+				+2.2
80,124	+				-0.5
80,125	-				-0.9
80,125	-				+1.5
80,125	-				+0.0
80,125	-				-0.8
80,125	-				-0.3
80,132	+				-0.5
80,175	-				-0.8
80,175	-				-0.6
80,280	+				+2.4
80,280	+				-1.2
80,281	-				+0.9
80,281	-				-1.0
80,281	-				+0.9
80,285	+				-1.8
80,286	-				-1.7
80,286	-				+1.0
80,320	+				-2.0
80,320	+				-1.0